Wall clock time and date at job start Mon Mar 30 2020 06:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46972 * 2 1 4 4 C 1.50701 * 109.46879 * 120.00321 * 2 1 3 5 5 C 1.34447 * 125.78730 * 120.00055 * 4 2 1 6 6 C 1.41510 * 106.80333 * 179.97438 * 5 4 2 7 7 C 1.34290 * 107.02305 * 0.02562 * 6 5 4 8 8 O 1.34195 * 125.78705 * 299.97134 * 4 2 1 9 9 C 1.51439 * 110.25519 * 179.97438 * 7 6 5 10 10 O 1.42901 * 110.33389 * 257.90456 * 9 7 6 11 11 C 1.50698 * 110.33867 * 135.76511 * 9 7 6 12 12 H 1.07995 * 120.00283 * 241.45289 * 11 9 7 13 13 C 1.37886 * 119.99670 * 61.45422 * 11 9 7 14 14 N 1.31512 * 119.99737 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99728 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47229 * 89.99801 * 15 13 11 17 17 H 1.48496 * 109.47117 * 209.99749 * 15 13 11 18 18 H 1.48499 * 109.47360 * 329.99891 * 15 13 11 19 19 C 1.54744 * 105.00738 * 16.92285 * 9 7 6 20 20 H 1.09000 * 110.99339 * 92.49068 * 19 9 7 21 21 C 1.53002 * 111.02834 * 216.29147 * 19 9 7 22 22 C 1.51192 * 142.39660 * 180.02562 * 6 5 4 23 23 H 1.08999 * 109.47339 * 299.99879 * 1 2 3 24 24 H 1.09003 * 109.47275 * 60.00134 * 1 2 3 25 25 H 1.09005 * 109.47574 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47011 * 239.99696 * 2 1 3 27 27 H 1.09001 * 109.47190 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47504 * 299.99907 * 3 2 1 29 29 H 1.09000 * 109.47501 * 59.99996 * 3 2 1 30 30 H 1.07998 * 126.59495 * 359.95578 * 5 4 2 31 31 H 0.96696 * 114.00136 * 298.54038 * 10 9 7 32 32 H 0.97008 * 119.99621 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.46682 * 173.81982 * 21 19 9 34 34 H 1.08995 * 109.47457 * 293.82304 * 21 19 9 35 35 H 1.09008 * 109.47075 * 53.82466 * 21 19 9 36 36 H 1.09002 * 110.35102 * 282.03507 * 22 6 5 37 37 H 1.08994 * 110.34937 * 44.20384 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8085 -1.8082 1.2427 6 6 3.0379 -2.1319 2.6010 7 6 2.3897 -1.2156 3.3384 8 8 1.7811 -0.3544 2.4997 9 6 2.5870 -1.4949 4.8137 10 8 1.4241 -2.1198 5.3607 11 6 2.8905 -0.2171 5.5527 12 1 3.8309 -0.1034 6.0712 13 6 1.9673 0.8070 5.5667 14 7 0.8222 0.6687 4.9348 15 14 2.3430 2.3907 6.4833 16 1 3.0179 3.3448 5.5670 17 1 1.0768 2.9895 6.9765 18 1 3.2332 2.0968 7.6350 19 6 3.7989 -2.4548 4.8812 20 1 4.7290 -1.9010 5.0093 21 6 3.6207 -3.4864 5.9970 22 6 3.7437 -3.1287 3.4922 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1842 -2.3407 0.3815 31 1 0.6240 -1.5798 5.3040 32 1 0.1726 1.3891 4.9450 33 1 4.4313 -4.2138 5.9521 34 1 3.6375 -2.9828 6.9635 35 1 2.6663 -3.9976 5.8702 36 1 3.1773 -4.0586 3.5437 37 1 4.7515 -3.3195 3.1236 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:18 Heat of formation + Delta-G solvation = -39.534649 kcal Electronic energy + Delta-G solvation = -19412.139963 eV Core-core repulsion = 16541.996940 eV Total energy + Delta-G solvation = -2870.143022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58663 -37.49472 -34.91929 -33.81753 -32.15465 -31.13860 -28.61988 -27.05485 -26.85795 -24.99653 -23.37114 -21.24555 -20.09378 -18.98599 -18.02542 -17.07269 -16.10164 -14.99778 -14.84040 -14.60571 -14.14411 -13.90113 -13.21609 -13.12928 -12.70344 -12.23214 -12.09664 -11.88339 -11.84966 -11.60824 -11.44807 -11.10598 -10.98474 -10.90409 -10.80615 -10.56674 -10.44992 -10.34505 -10.22698 -10.08849 -9.32049 -8.61075 -8.53855 -8.34573 -7.07969 -6.21813 -4.33259 2.87540 3.22503 3.29373 3.32651 3.61643 3.82160 4.29656 5.00016 5.06991 5.24652 5.44993 5.52053 5.75276 5.83721 5.87330 5.87808 5.92885 6.06231 6.11176 6.14682 6.21750 6.30006 6.42498 6.52911 6.53595 6.56309 6.64696 6.68919 6.90245 7.04906 7.15162 7.34760 7.39802 7.57834 7.75012 7.98766 8.52781 8.69434 9.29131 9.40317 10.82678 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016586 B = 0.011191 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.756777 B = 2501.326947 C = 3683.636591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.003 4.003 3 C -0.146 4.146 4 C -0.048 4.048 5 C -0.193 4.193 6 C -0.265 4.265 7 C 0.040 3.960 8 O -0.119 6.119 9 C 0.331 3.669 10 O -0.572 6.572 11 C -0.546 4.546 12 H 0.066 0.934 13 C 0.074 3.926 14 N -0.872 5.872 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.070 4.070 20 H 0.082 0.918 21 C -0.122 4.122 22 C -0.038 4.038 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.382 0.618 32 H 0.269 0.731 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -2.196 -6.601 7.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 C -0.203 4.203 4 C -0.099 4.099 5 C -0.213 4.213 6 C -0.266 4.266 7 C -0.014 4.014 8 O -0.013 6.013 9 C 0.291 3.709 10 O -0.381 6.381 11 C -0.583 4.583 12 H 0.085 0.915 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.088 4.088 20 H 0.100 0.900 21 C -0.180 4.180 22 C -0.075 4.075 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.534 -2.333 -6.426 7.006 hybrid contribution -0.134 1.351 -0.027 1.358 sum 1.399 -0.982 -6.453 6.676 Atomic orbital electron populations 1.21837 0.94358 1.02041 1.02044 1.19511 0.95882 0.95425 0.91303 1.21840 1.01194 0.95310 1.02005 1.22138 1.04043 0.98343 0.85328 1.20626 1.05293 0.99586 0.95789 1.21107 1.09481 1.02896 0.93112 1.24997 0.92580 0.86861 0.96962 1.84063 1.57800 1.46203 1.13193 1.17896 0.83411 0.89896 0.79740 1.86184 1.20864 1.48168 1.82897 1.21674 1.03713 0.99450 1.33485 0.91532 1.25052 0.94916 0.98735 0.94367 1.69664 1.07201 1.33826 1.40268 0.86469 0.77936 0.82870 0.80053 1.20525 1.20965 1.19611 1.21890 0.97489 0.95787 0.93657 0.90011 1.21445 1.00774 0.97528 0.98213 1.20464 0.98071 0.96057 0.92940 0.91698 0.92666 0.92617 0.89560 0.92609 0.92604 0.91839 0.85545 0.76744 0.92101 0.94253 0.92476 0.91877 0.91822 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.17 37.16 0.34 -1.85 16 2 C 0.00 -0.05 3.32 -91.77 -0.31 -0.35 16 3 C -0.15 -2.23 9.17 37.15 0.34 -1.89 16 4 C -0.05 -1.00 5.83 -35.65 -0.21 -1.21 16 5 C -0.19 -4.06 10.79 -39.68 -0.43 -4.48 16 6 C -0.26 -6.12 6.96 -104.53 -0.73 -6.85 16 7 C 0.04 1.02 6.37 -35.34 -0.23 0.79 16 8 O -0.12 -3.03 9.74 4.79 0.05 -2.98 16 9 C 0.33 8.39 0.77 -91.64 -0.07 8.32 16 10 O -0.57 -14.77 11.41 -35.23 -0.40 -15.17 16 11 C -0.55 -14.77 8.24 -34.44 -0.28 -15.05 16 12 H 0.07 1.77 7.63 -52.49 -0.40 1.37 16 13 C 0.07 1.99 5.25 -17.82 -0.09 1.89 16 14 N -0.87 -23.60 10.22 55.43 0.57 -23.04 16 15 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C -0.07 -1.50 3.18 -88.92 -0.28 -1.79 16 20 H 0.08 1.73 7.80 -51.93 -0.41 1.33 16 21 C -0.12 -2.31 8.73 37.16 0.32 -1.99 16 22 C -0.04 -0.78 6.34 -26.86 -0.17 -0.95 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.38 10.18 7.32 45.56 0.33 10.51 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.24 7.25 -51.92 -0.38 0.86 16 36 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -28.90 301.99 -7.09 -35.99 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.04 Total: 10.22 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -1.79 Total: -25.41 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.57 Total: -23.04 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.36 Total: -18.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.90 -7.09 -35.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.546 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds