Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.39194 * 120.07128 * 269.72316 * 4 3 2 6 6 O 1.35996 * 120.07576 * 359.97438 * 5 4 3 7 7 C 1.42899 * 117.00265 * 180.02562 * 6 5 4 8 8 C 1.38524 * 119.85081 * 179.70461 * 5 4 3 9 9 C 1.38281 * 119.99948 * 0.56867 * 8 5 4 10 10 C 1.38213 * 120.14776 * 359.72874 * 9 8 5 11 11 C 1.38275 * 120.14328 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00070 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47694 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47052 * 299.97960 * 12 11 10 15 15 C 1.50706 * 109.47159 * 59.97611 * 12 11 10 16 16 H 1.08004 * 119.99447 * 0.02562 * 15 12 11 17 17 C 1.37868 * 120.00320 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00123 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 120.00069 * 0.02562 * 17 15 12 20 20 H 1.48501 * 109.46941 * 89.99693 * 19 17 15 21 21 H 1.48500 * 109.47197 * 209.99974 * 19 17 15 22 22 H 1.48498 * 109.46951 * 329.99911 * 19 17 15 23 23 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.09000 * 109.46867 * 299.99822 * 7 6 5 29 29 H 1.08992 * 109.46955 * 59.99887 * 7 6 5 30 30 H 1.09003 * 109.46834 * 180.02562 * 7 6 5 31 31 H 1.08005 * 119.99787 * 180.29528 * 8 5 4 32 32 H 1.08006 * 119.92731 * 179.74955 * 9 8 5 33 33 H 1.07998 * 119.92326 * 179.97438 * 10 9 8 34 34 H 1.08999 * 109.47331 * 59.99846 * 14 12 11 35 35 H 1.09004 * 109.46930 * 179.97438 * 14 12 11 36 36 H 1.08994 * 109.46938 * 299.99750 * 14 12 11 37 37 H 0.97001 * 120.00049 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.0446 1.6229 1.2054 6 8 3.3722 1.5406 2.3846 7 6 4.1454 1.6494 3.5814 8 6 5.4187 1.7983 1.2007 9 6 6.1001 1.8881 0.0007 10 6 5.4140 1.7976 -1.1956 11 6 4.0432 1.6164 -1.1979 12 6 3.2983 1.5176 -2.5043 13 1 2.2357 1.3767 -2.3070 14 6 3.5020 2.8046 -3.3061 15 6 3.8222 0.3457 -3.2939 16 1 4.6150 -0.2665 -2.8898 17 6 3.2896 0.0551 -4.5319 18 7 3.7465 -0.9678 -5.2207 19 14 1.9190 1.1144 -5.2310 20 1 2.5066 2.2266 -6.0203 21 1 1.0532 0.2874 -6.1094 22 1 1.1077 1.6714 -4.1189 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 4.8855 0.8496 3.6098 29 1 4.6522 2.6142 3.6000 30 1 3.4884 1.5669 4.4472 31 1 5.9573 1.8694 2.1342 32 1 7.1710 2.0288 -0.0016 33 1 5.9498 1.8686 -2.1307 34 1 4.5647 2.9455 -3.5035 35 1 2.9636 2.7330 -4.2511 36 1 3.1231 3.6522 -2.7350 37 1 3.3720 -1.1720 -6.0919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -53.956663 kcal Electronic energy + Delta-G solvation = -18964.840812 eV Core-core repulsion = 16094.072404 eV Total energy + Delta-G solvation = -2870.768408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09144 -37.93331 -36.66497 -34.21844 -31.66386 -31.25920 -29.01966 -28.48204 -26.97526 -25.04889 -22.88145 -22.52580 -21.56753 -19.74545 -17.56229 -16.99589 -16.59621 -15.91465 -15.57750 -14.87443 -14.67276 -14.50387 -13.98160 -13.62663 -13.34213 -12.77600 -12.42602 -12.18335 -12.14487 -11.98865 -11.73141 -11.37955 -11.23759 -11.16996 -10.98554 -10.72733 -10.54269 -10.24071 -9.91089 -9.48661 -9.15311 -9.08430 -8.57926 -7.93422 -7.64365 -6.08751 -4.08557 1.73613 1.94106 3.27941 3.39512 3.42923 3.51221 3.96061 4.40798 4.52949 5.07417 5.20943 5.24676 5.25421 5.39991 5.48593 5.52727 5.64519 5.77008 5.85243 5.91557 5.97984 6.05741 6.27486 6.38690 6.40955 6.45975 6.61592 6.65296 6.66834 6.89881 6.97785 7.10521 7.28772 7.52283 7.62077 7.73036 8.23303 8.49235 8.94460 9.52674 11.03776 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.008128 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.977068 B = 3444.007416 C = 4133.178263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 O -0.323 6.323 4 C 0.056 3.944 5 C 0.101 3.899 6 O -0.311 6.311 7 C 0.028 3.972 8 C -0.221 4.221 9 C -0.092 4.092 10 C -0.130 4.130 11 C -0.007 4.007 12 C 0.038 3.962 13 H 0.047 0.953 14 C -0.142 4.142 15 C -0.509 4.509 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.263 1.263 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 4.811 13.377 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.240 6.240 4 C 0.011 3.989 5 C 0.056 3.944 6 O -0.225 6.225 7 C -0.067 4.067 8 C -0.240 4.240 9 C -0.110 4.110 10 C -0.148 4.148 11 C -0.007 4.007 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.199 4.199 15 C -0.546 4.546 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.537 5.537 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.188 1.188 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.374 4.804 13.252 14.101 hybrid contribution -0.179 0.298 -0.332 0.481 sum -0.553 5.102 12.920 13.902 Atomic orbital electron populations 1.21709 0.94022 1.01924 1.02694 1.22691 0.94826 0.83030 1.00986 1.86008 1.17241 1.26668 1.94073 1.17851 0.83765 1.08004 0.89249 1.19393 0.90774 0.99110 0.85127 1.86138 1.35970 1.88205 1.12175 1.22970 0.96981 1.00898 0.85857 1.20908 0.92465 1.11513 0.99086 1.20904 0.99330 0.98897 0.91915 1.20962 0.93636 1.02184 0.98033 1.20391 0.93715 0.91979 0.94654 1.18313 0.96541 0.94670 0.88585 0.93529 1.22127 1.01162 0.97541 0.99049 1.20933 1.21036 1.10996 1.01676 0.90591 1.24953 0.96338 0.94931 0.96665 1.69888 1.42569 1.27990 1.13223 0.86897 0.82661 0.79779 0.79256 1.20568 1.22522 1.18810 0.92341 0.91786 0.91198 0.91553 0.93819 0.93063 0.93036 0.88813 0.86050 0.86271 0.85093 0.92732 0.93991 0.94930 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 37.16 0.38 -1.84 16 2 C 0.06 1.10 6.53 37.16 0.24 1.34 16 3 O -0.32 -6.77 8.69 -34.20 -0.30 -7.06 16 4 C 0.06 1.16 5.71 -39.12 -0.22 0.94 16 5 C 0.10 1.85 6.70 -39.12 -0.26 1.59 16 6 O -0.31 -5.16 10.28 -34.21 -0.35 -5.51 16 7 C 0.03 0.31 9.81 101.05 0.99 1.31 16 8 C -0.22 -3.52 9.04 -39.46 -0.36 -3.88 16 9 C -0.09 -1.51 10.04 -39.57 -0.40 -1.91 16 10 C -0.13 -2.53 8.71 -39.58 -0.34 -2.88 16 11 C -0.01 -0.15 4.75 -104.50 -0.50 -0.64 16 12 C 0.04 0.91 2.03 -92.92 -0.19 0.72 16 13 H 0.05 1.18 5.79 -51.93 -0.30 0.88 16 14 C -0.14 -3.15 8.49 37.16 0.32 -2.84 16 15 C -0.51 -14.04 8.82 -34.44 -0.30 -14.34 16 16 H 0.08 2.28 7.85 -52.48 -0.41 1.86 16 17 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 19 Si 0.88 21.95 24.37 -169.99 -4.14 17.80 16 20 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 21 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 29 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 1.54 6.30 -52.48 -0.33 1.21 16 32 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.13 2.55 7.57 -52.49 -0.40 2.15 16 34 H 0.05 1.14 7.39 -51.93 -0.38 0.76 16 35 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -31.25 300.96 -5.57 -36.82 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.35 Total: 0.20 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -0.74 Total: -20.47 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.65 Total: -12.57 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.25 -5.57 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.137 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds