Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.39194 * 120.07128 * 269.72316 * 4 3 2 6 6 O 1.35996 * 120.07576 * 359.97438 * 5 4 3 7 7 C 1.42899 * 117.00265 * 180.02562 * 6 5 4 8 8 C 1.38524 * 119.85081 * 179.70461 * 5 4 3 9 9 C 1.38281 * 119.99948 * 0.56867 * 8 5 4 10 10 C 1.38213 * 120.14776 * 359.72874 * 9 8 5 11 11 C 1.38275 * 120.14328 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00070 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47694 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47052 * 299.97960 * 12 11 10 15 15 C 1.50706 * 109.47159 * 59.97611 * 12 11 10 16 16 H 1.08004 * 119.99447 * 0.02562 * 15 12 11 17 17 C 1.37868 * 120.00320 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00123 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 120.00069 * 0.02562 * 17 15 12 20 20 H 1.48501 * 109.46941 * 89.99693 * 19 17 15 21 21 H 1.48500 * 109.47197 * 209.99974 * 19 17 15 22 22 H 1.48498 * 109.46951 * 329.99911 * 19 17 15 23 23 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.09000 * 109.46867 * 299.99822 * 7 6 5 29 29 H 1.08992 * 109.46955 * 59.99887 * 7 6 5 30 30 H 1.09003 * 109.46834 * 180.02562 * 7 6 5 31 31 H 1.08005 * 119.99787 * 180.29528 * 8 5 4 32 32 H 1.08006 * 119.92731 * 179.74955 * 9 8 5 33 33 H 1.07998 * 119.92326 * 179.97438 * 10 9 8 34 34 H 1.08999 * 109.47331 * 59.99846 * 14 12 11 35 35 H 1.09004 * 109.46930 * 179.97438 * 14 12 11 36 36 H 1.08994 * 109.46938 * 299.99750 * 14 12 11 37 37 H 0.97001 * 120.00049 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.0446 1.6229 1.2054 6 8 3.3722 1.5406 2.3846 7 6 4.1454 1.6494 3.5814 8 6 5.4187 1.7983 1.2007 9 6 6.1001 1.8881 0.0007 10 6 5.4140 1.7976 -1.1956 11 6 4.0432 1.6164 -1.1979 12 6 3.2983 1.5176 -2.5043 13 1 2.2357 1.3767 -2.3070 14 6 3.5020 2.8046 -3.3061 15 6 3.8222 0.3457 -3.2939 16 1 4.6150 -0.2665 -2.8898 17 6 3.2896 0.0551 -4.5319 18 7 3.7465 -0.9678 -5.2207 19 14 1.9190 1.1144 -5.2310 20 1 2.5066 2.2266 -6.0203 21 1 1.0532 0.2874 -6.1094 22 1 1.1077 1.6714 -4.1189 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 4.8855 0.8496 3.6098 29 1 4.6522 2.6142 3.6000 30 1 3.4884 1.5669 4.4472 31 1 5.9573 1.8694 2.1342 32 1 7.1710 2.0288 -0.0016 33 1 5.9498 1.8686 -2.1307 34 1 4.5647 2.9455 -3.5035 35 1 2.9636 2.7330 -4.2511 36 1 3.1231 3.6522 -2.7350 37 1 3.3720 -1.1720 -6.0919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -73.451389 kcal Electronic energy + Delta-G solvation = -18965.686167 eV Core-core repulsion = 16094.072404 eV Total energy + Delta-G solvation = -2871.613762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47613 -39.27557 -38.14754 -36.02367 -33.64227 -32.67002 -30.31626 -30.02058 -28.02822 -27.10092 -24.42010 -23.98792 -22.99444 -21.35599 -19.01382 -18.86192 -18.02297 -17.52557 -16.83502 -16.66871 -16.00093 -15.89405 -15.42465 -15.16469 -14.95499 -14.51541 -14.10391 -13.72040 -13.52110 -13.35797 -13.06453 -12.91841 -12.85416 -12.63696 -12.42336 -12.14111 -12.09614 -11.83583 -11.70110 -11.33493 -11.13801 -10.76018 -10.66340 -9.44919 -9.01544 -8.30021 -6.33066 0.31277 0.51813 1.28594 1.35366 1.45952 2.31585 2.36888 2.55036 3.03078 3.12432 3.91676 4.04965 4.13158 4.26342 4.32739 4.40991 4.43313 4.45042 4.50044 4.52529 4.60167 4.69702 4.74448 4.78917 4.93365 5.01277 5.06538 5.12500 5.21701 5.31638 5.35727 5.56765 5.64032 5.82531 5.88515 6.29830 6.30874 6.70495 6.79312 7.31134 8.86057 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.008128 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.977068 B = 3444.007416 C = 4133.178263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.058 3.942 3 O -0.338 6.338 4 C 0.027 3.973 5 C 0.101 3.899 6 O -0.330 6.330 7 C 0.017 3.983 8 C -0.207 4.207 9 C -0.080 4.080 10 C -0.149 4.149 11 C -0.038 4.038 12 C 0.042 3.958 13 H 0.030 0.970 14 C -0.139 4.139 15 C -0.503 4.503 16 H 0.037 0.963 17 C 0.020 3.980 18 N -0.944 5.944 19 Si 0.941 3.059 20 H -0.264 1.264 21 H -0.296 1.296 22 H -0.255 1.255 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.053 0.947 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 6.275 15.666 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 O -0.255 6.255 4 C -0.017 4.017 5 C 0.055 3.945 6 O -0.244 6.244 7 C -0.078 4.078 8 C -0.226 4.226 9 C -0.098 4.098 10 C -0.167 4.167 11 C -0.039 4.039 12 C 0.023 3.977 13 H 0.048 0.952 14 C -0.196 4.196 15 C -0.541 4.541 16 H 0.055 0.945 17 C -0.177 4.177 18 N -0.585 5.585 19 Si 0.768 3.232 20 H -0.190 1.190 21 H -0.224 1.224 22 H -0.179 1.179 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.149 6.284 15.564 16.785 hybrid contribution -0.148 -0.210 -0.843 0.881 sum -0.297 6.074 14.721 15.928 Atomic orbital electron populations 1.21719 0.91410 1.03621 1.02896 1.22772 0.96927 0.82275 0.99682 1.85979 1.17765 1.27628 1.94164 1.18075 0.83917 1.09453 0.90257 1.19433 0.91541 0.98322 0.85184 1.86114 1.37540 1.87883 1.12906 1.23375 0.97841 1.02314 0.84230 1.21359 0.91604 1.09010 1.00604 1.21285 1.01109 0.96644 0.90726 1.21002 0.92927 1.03528 0.99239 1.20267 0.94748 0.94900 0.93974 1.18114 0.95635 0.93973 0.89953 0.95215 1.22054 1.01660 0.97301 0.98560 1.21091 1.19579 1.11581 1.01826 0.94459 1.25710 0.98743 0.96136 0.97133 1.70019 1.44505 1.30034 1.13910 0.85960 0.79915 0.78493 0.78796 1.18979 1.22408 1.17923 0.90785 0.92817 0.88779 0.94957 0.92954 0.91680 0.91382 0.86371 0.81869 0.82415 0.86082 0.92089 0.94741 0.92787 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 10.28 71.98 0.74 -3.40 16 2 C 0.06 2.18 6.53 71.98 0.47 2.65 16 3 O -0.34 -14.33 8.69 -79.65 -0.69 -15.02 16 4 C 0.03 1.13 5.71 22.57 0.13 1.26 16 5 C 0.10 3.50 6.70 22.57 0.15 3.66 16 6 O -0.33 -10.13 10.28 -79.66 -0.82 -10.95 16 7 C 0.02 0.30 9.81 113.37 1.11 1.41 16 8 C -0.21 -5.89 9.04 22.35 0.20 -5.68 16 9 C -0.08 -2.40 10.04 22.27 0.22 -2.18 16 10 C -0.15 -5.77 8.71 22.27 0.19 -5.58 16 11 C -0.04 -1.70 4.75 -19.79 -0.09 -1.79 16 12 C 0.04 2.08 2.03 -12.28 -0.02 2.05 16 13 H 0.03 1.55 5.79 -2.39 -0.01 1.54 16 14 C -0.14 -6.14 8.49 71.98 0.61 -5.52 16 15 C -0.50 -28.97 8.82 25.60 0.23 -28.74 16 16 H 0.04 2.37 7.85 -2.91 -0.02 2.35 16 17 C 0.02 1.18 5.45 84.65 0.46 1.64 16 18 N -0.94 -58.98 13.96 21.44 0.30 -58.68 16 19 Si 0.94 45.96 24.37 68.60 1.67 47.63 16 20 H -0.26 -12.18 6.87 99.48 0.68 -11.50 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.25 -12.00 6.53 99.48 0.65 -11.35 16 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.03 1.40 8.10 -2.39 -0.02 1.38 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.01 7.65 -2.39 -0.02 1.00 16 29 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 30 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.16 3.23 6.30 -2.91 -0.02 3.21 16 32 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.12 4.80 7.57 -2.91 -0.02 4.78 16 34 H 0.06 2.56 7.39 -2.39 -0.02 2.54 16 35 H 0.03 1.55 3.27 -2.38 -0.01 1.54 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -70.58 300.96 5.83 -64.74 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.97 Total: 12.50 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.40 Total: -40.22 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.30 Total: -58.68 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.51 Total: -25.98 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -70.58 5.83 -64.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.707 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds