Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47310 * 120.00173 * 2 1 3 5 5 C 1.34444 * 125.78487 * 120.04459 * 4 2 1 6 6 C 1.41510 * 106.80073 * 179.97438 * 5 4 2 7 7 C 1.34293 * 107.02651 * 359.97438 * 6 5 4 8 8 O 1.34199 * 125.78428 * 300.02666 * 4 2 1 9 9 C 1.51437 * 110.25743 * 180.02562 * 7 6 5 10 10 C 1.54447 * 105.08662 * 343.06323 * 9 7 6 11 11 H 1.09001 * 110.94984 * 143.76758 * 10 9 7 12 12 C 1.53000 * 110.95014 * 267.47723 * 10 9 7 13 13 C 1.51194 * 142.39687 * 179.97438 * 6 5 4 14 14 O 1.42898 * 110.34829 * 315.82672 * 13 6 5 15 15 C 1.50693 * 110.35125 * 77.99932 * 13 6 5 16 16 H 1.08003 * 120.00217 * 118.54766 * 15 13 6 17 17 C 1.37876 * 120.00026 * 298.54609 * 15 13 6 18 18 N 1.31515 * 119.99861 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47404 * 60.00243 * 19 17 15 21 21 H 1.48510 * 109.47005 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47136 * 299.99744 * 19 17 15 23 23 H 1.09000 * 109.47118 * 299.99999 * 1 2 3 24 24 H 1.09000 * 109.47360 * 59.99617 * 1 2 3 25 25 H 1.08995 * 109.47428 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47118 * 240.00001 * 2 1 3 27 27 H 1.09000 * 109.47224 * 300.00466 * 3 2 1 28 28 H 1.09000 * 109.47032 * 59.99948 * 3 2 1 29 29 H 1.08999 * 109.47239 * 179.97438 * 3 2 1 30 30 H 1.07996 * 126.60401 * 359.97438 * 5 4 2 31 31 H 1.09002 * 110.33664 * 101.99572 * 9 7 6 32 32 H 1.08996 * 110.33598 * 224.13110 * 9 7 6 33 33 H 1.09002 * 109.46885 * 58.54702 * 12 10 9 34 34 H 1.09003 * 109.47297 * 178.54658 * 12 10 9 35 35 H 1.09004 * 109.47421 * 298.54710 * 12 10 9 36 36 H 0.96701 * 114.00330 * 61.45840 * 14 13 6 37 37 H 0.97000 * 119.99860 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8093 -1.8076 1.2426 6 6 3.0385 -2.1314 2.6009 7 6 2.3904 -1.2152 3.3384 8 8 1.7803 -0.3549 2.4997 9 6 2.5886 -1.4939 4.8137 10 6 3.0894 -2.9532 4.8833 11 1 3.8237 -3.0757 5.6795 12 6 1.9212 -3.9244 5.0653 13 6 3.7440 -3.1285 3.4921 14 8 3.5407 -4.4578 3.0088 15 6 5.2168 -2.8173 3.5635 16 1 5.6709 -2.5690 4.5114 17 6 5.9845 -2.8496 2.4187 18 7 5.4313 -3.1515 1.2643 19 14 7.8102 -2.4646 2.5073 20 1 8.4771 -3.4335 3.4137 21 1 8.4040 -2.5664 1.1499 22 1 8.0009 -1.0871 3.0283 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.1859 -2.3396 0.3815 31 1 3.3347 -0.8171 5.2302 32 1 1.6446 -1.3914 5.3487 33 1 1.2222 -3.8112 4.2366 34 1 2.2984 -4.9468 5.0855 35 1 1.4106 -3.7069 6.0035 36 1 3.8909 -4.6113 2.1205 37 1 5.9715 -3.1746 0.4590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260563307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = -37.322275 kcal Electronic energy + Delta-G solvation = -19349.770303 eV Core-core repulsion = 16479.723217 eV Total energy + Delta-G solvation = -2870.047086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64499 -37.51738 -35.04708 -33.53226 -32.13080 -31.13197 -28.58489 -26.94371 -26.86676 -25.25962 -23.15612 -21.38751 -20.26570 -18.97185 -17.96046 -16.95371 -15.72579 -15.17538 -14.95889 -14.65954 -14.06309 -13.75387 -13.62899 -12.85647 -12.72056 -12.42493 -12.14557 -11.99892 -11.92116 -11.50716 -11.46112 -10.98849 -10.95720 -10.92086 -10.81647 -10.58978 -10.49697 -10.31354 -10.17202 -10.02376 -9.40756 -8.57016 -8.40572 -8.09272 -7.05154 -6.14701 -4.25606 2.76325 3.25436 3.29611 3.32637 3.52911 3.93759 4.33440 5.01933 5.12322 5.17794 5.40290 5.54405 5.65137 5.77357 5.78677 5.85232 6.00981 6.04024 6.13351 6.20964 6.23378 6.33812 6.43744 6.45738 6.49302 6.51588 6.58568 6.85462 6.98853 7.07913 7.23053 7.29232 7.62633 7.76753 7.82187 8.12891 8.35926 8.75724 9.41394 9.53921 10.88966 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.009787 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.073644 B = 2860.212358 C = 3749.796205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 C -0.145 4.145 4 C -0.056 4.056 5 C -0.138 4.138 6 C -0.128 4.128 7 C -0.100 4.100 8 O -0.174 6.174 9 C -0.002 4.002 10 C -0.076 4.076 11 H 0.084 0.916 12 C -0.124 4.124 13 C 0.311 3.689 14 O -0.584 6.584 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.076 3.924 18 N -0.883 5.883 19 Si 0.897 3.103 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.379 0.621 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 4.497 -0.686 8.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 C -0.203 4.203 4 C -0.105 4.105 5 C -0.158 4.158 6 C -0.130 4.130 7 C -0.149 4.149 8 O -0.073 6.073 9 C -0.040 4.040 10 C -0.094 4.094 11 H 0.102 0.898 12 C -0.182 4.182 13 C 0.272 3.728 14 O -0.393 6.393 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.128 4.128 18 N -0.521 5.521 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.203 1.203 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.228 0.772 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.175 4.636 -0.203 8.545 hybrid contribution 1.591 0.426 -0.823 1.841 sum -5.584 5.062 -1.026 7.606 Atomic orbital electron populations 1.21842 0.94691 1.02075 1.01579 1.19522 0.95432 0.95343 0.91728 1.21840 1.01596 0.95304 1.01514 1.22021 1.05683 0.99535 0.83240 1.21032 0.99800 0.97090 0.97842 1.22071 0.97383 1.00672 0.92869 1.22762 1.02850 0.93985 0.95255 1.83578 1.60681 1.48078 1.14967 1.20561 1.00158 0.97260 0.85990 1.22024 0.96908 0.91767 0.98732 0.89813 1.21501 0.97407 0.99828 0.99432 1.17742 0.91250 0.78303 0.85539 1.86116 1.83235 1.31944 1.37956 1.21561 0.92853 1.48279 0.94511 0.92012 1.24979 0.98793 0.93830 0.95177 1.69701 1.35956 1.47834 0.98643 0.86582 0.84822 0.78951 0.77210 1.20036 1.21169 1.20276 0.92473 0.92554 0.92415 0.89013 0.92558 0.92487 0.92324 0.83996 0.90568 0.91968 0.93129 0.92015 0.94361 0.77167 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.18 37.16 0.34 -1.61 16 2 C 0.00 -0.03 3.32 -91.77 -0.31 -0.33 16 3 C -0.15 -2.07 9.18 37.16 0.34 -1.73 16 4 C -0.06 -1.16 5.83 -35.65 -0.21 -1.37 16 5 C -0.14 -3.27 9.82 -39.68 -0.39 -3.66 16 6 C -0.13 -3.19 5.18 -104.53 -0.54 -3.73 16 7 C -0.10 -2.31 8.21 -35.34 -0.29 -2.60 16 8 O -0.17 -3.86 10.66 4.77 0.05 -3.81 16 9 C 0.00 -0.05 6.32 -26.76 -0.17 -0.22 16 10 C -0.08 -1.61 3.20 -88.94 -0.28 -1.89 16 11 H 0.08 1.71 7.74 -51.93 -0.40 1.31 16 12 C -0.12 -2.36 8.45 37.16 0.31 -2.05 16 13 C 0.31 7.85 0.76 -91.76 -0.07 7.78 16 14 O -0.58 -15.20 11.72 -35.23 -0.41 -15.62 16 15 C -0.53 -14.46 8.25 -34.44 -0.28 -14.75 16 16 H 0.06 1.64 7.57 -52.48 -0.40 1.25 16 17 C 0.08 2.02 5.26 -17.82 -0.09 1.93 16 18 N -0.88 -23.50 9.65 55.43 0.53 -22.97 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.14 3.40 7.53 -52.49 -0.40 3.00 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.19 7.78 -51.93 -0.40 0.79 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.38 10.09 7.32 45.56 0.33 10.43 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -28.83 301.39 -6.98 -35.81 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.04 Total: 10.34 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -1.64 Total: -24.24 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.53 Total: -22.97 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.36 Total: -19.43 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.83 -6.98 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.508 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds