Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47310 * 120.00173 * 2 1 3 5 5 C 1.34444 * 125.78487 * 120.04459 * 4 2 1 6 6 C 1.41510 * 106.80073 * 179.97438 * 5 4 2 7 7 C 1.34293 * 107.02651 * 359.97438 * 6 5 4 8 8 O 1.34199 * 125.78428 * 300.02666 * 4 2 1 9 9 C 1.51437 * 110.25743 * 180.02562 * 7 6 5 10 10 C 1.54447 * 105.08662 * 343.06323 * 9 7 6 11 11 H 1.09001 * 110.94984 * 143.76758 * 10 9 7 12 12 C 1.53000 * 110.95014 * 267.47723 * 10 9 7 13 13 C 1.51194 * 142.39687 * 179.97438 * 6 5 4 14 14 O 1.42898 * 110.34829 * 315.82672 * 13 6 5 15 15 C 1.50693 * 110.35125 * 77.99932 * 13 6 5 16 16 H 1.08003 * 120.00217 * 118.54766 * 15 13 6 17 17 C 1.37876 * 120.00026 * 298.54609 * 15 13 6 18 18 N 1.31515 * 119.99861 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47404 * 60.00243 * 19 17 15 21 21 H 1.48510 * 109.47005 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47136 * 299.99744 * 19 17 15 23 23 H 1.09000 * 109.47118 * 299.99999 * 1 2 3 24 24 H 1.09000 * 109.47360 * 59.99617 * 1 2 3 25 25 H 1.08995 * 109.47428 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47118 * 240.00001 * 2 1 3 27 27 H 1.09000 * 109.47224 * 300.00466 * 3 2 1 28 28 H 1.09000 * 109.47032 * 59.99948 * 3 2 1 29 29 H 1.08999 * 109.47239 * 179.97438 * 3 2 1 30 30 H 1.07996 * 126.60401 * 359.97438 * 5 4 2 31 31 H 1.09002 * 110.33664 * 101.99572 * 9 7 6 32 32 H 1.08996 * 110.33598 * 224.13110 * 9 7 6 33 33 H 1.09002 * 109.46885 * 58.54702 * 12 10 9 34 34 H 1.09003 * 109.47297 * 178.54658 * 12 10 9 35 35 H 1.09004 * 109.47421 * 298.54710 * 12 10 9 36 36 H 0.96701 * 114.00330 * 61.45840 * 14 13 6 37 37 H 0.97000 * 119.99860 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8093 -1.8076 1.2426 6 6 3.0385 -2.1314 2.6009 7 6 2.3904 -1.2152 3.3384 8 8 1.7803 -0.3549 2.4997 9 6 2.5886 -1.4939 4.8137 10 6 3.0894 -2.9532 4.8833 11 1 3.8237 -3.0757 5.6795 12 6 1.9212 -3.9244 5.0653 13 6 3.7440 -3.1285 3.4921 14 8 3.5407 -4.4578 3.0088 15 6 5.2168 -2.8173 3.5635 16 1 5.6709 -2.5690 4.5114 17 6 5.9845 -2.8496 2.4187 18 7 5.4313 -3.1515 1.2643 19 14 7.8102 -2.4646 2.5073 20 1 8.4771 -3.4335 3.4137 21 1 8.4040 -2.5664 1.1499 22 1 8.0009 -1.0871 3.0283 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.1859 -2.3396 0.3815 31 1 3.3347 -0.8171 5.2302 32 1 1.6446 -1.3914 5.3487 33 1 1.2222 -3.8112 4.2366 34 1 2.2984 -4.9468 5.0855 35 1 1.4106 -3.7069 6.0035 36 1 3.8909 -4.6113 2.1205 37 1 5.9715 -3.1746 0.4590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260563307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = -54.357705 kcal Electronic energy + Delta-G solvation = -19350.509015 eV Core-core repulsion = 16479.723217 eV Total energy + Delta-G solvation = -2870.785798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.37876 -39.28912 -36.39074 -35.36368 -34.15969 -32.87127 -30.18430 -28.81611 -28.03916 -26.84057 -25.03831 -22.80126 -21.97880 -20.71108 -19.67484 -18.93699 -17.39520 -16.99741 -16.83815 -16.02213 -15.86602 -15.30459 -15.12696 -14.54878 -14.14958 -13.94792 -13.74712 -13.59225 -13.40772 -13.23447 -13.02705 -12.80059 -12.56946 -12.39085 -12.32232 -12.15425 -12.11849 -11.93811 -11.78980 -11.64134 -11.21940 -10.56453 -10.33431 -9.98304 -8.78226 -8.14674 -6.33577 1.05379 1.38412 1.38590 1.45613 1.87550 2.11357 2.38509 3.08630 3.59551 3.91649 3.97505 4.08456 4.21698 4.24151 4.41388 4.52783 4.58619 4.71667 4.77552 4.78315 4.84360 4.91081 4.92934 4.98557 5.06533 5.19140 5.25066 5.34307 5.35568 5.43350 5.54669 5.57362 5.71317 5.86458 5.98141 6.14821 6.59268 6.71520 7.35517 7.45578 8.85862 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.009787 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.073644 B = 2860.212358 C = 3749.796205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.140 4.140 4 C -0.036 4.036 5 C -0.178 4.178 6 C -0.161 4.161 7 C -0.111 4.111 8 O -0.174 6.174 9 C 0.003 3.997 10 C -0.077 4.077 11 H 0.089 0.911 12 C -0.115 4.115 13 C 0.294 3.706 14 O -0.590 6.590 15 C -0.560 4.560 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.894 5.894 19 Si 0.953 3.047 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.278 1.278 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.033 0.967 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.370 0.630 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 5.935 -0.470 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.085 4.085 5 C -0.198 4.198 6 C -0.163 4.163 7 C -0.159 4.159 8 O -0.073 6.073 9 C -0.034 4.034 10 C -0.096 4.096 11 H 0.107 0.893 12 C -0.172 4.172 13 C 0.255 3.745 14 O -0.398 6.398 15 C -0.598 4.598 16 H 0.076 0.924 17 C -0.169 4.169 18 N -0.532 5.532 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.204 1.204 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.052 6.073 0.026 10.086 hybrid contribution 1.850 -0.034 -0.950 2.080 sum -6.202 6.039 -0.924 8.705 Atomic orbital electron populations 1.21800 0.92420 1.02154 1.03131 1.19832 0.97291 0.95972 0.89405 1.21811 1.00532 0.94217 1.03163 1.22872 1.03324 0.98254 0.84096 1.21077 1.02322 0.99053 0.97318 1.22242 0.98650 1.01618 0.93777 1.23323 1.02426 0.93591 0.96610 1.83600 1.60454 1.47841 1.15421 1.20649 1.02076 0.96252 0.84414 1.22085 0.97642 0.93345 0.96510 0.89300 1.21429 0.96381 0.98644 1.00793 1.18063 0.91041 0.77656 0.87779 1.86106 1.83164 1.33185 1.37317 1.21871 0.94407 1.48951 0.94528 0.92421 1.25664 1.02330 0.93861 0.95049 1.69811 1.36847 1.47776 0.98811 0.85704 0.80620 0.78540 0.77252 1.19582 1.20744 1.20350 0.92859 0.89050 0.93117 0.88131 0.88892 0.92862 0.93974 0.85432 0.89712 0.88473 0.94758 0.93062 0.90355 0.78210 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.18 71.98 0.66 -2.70 16 2 C -0.01 -0.20 3.32 -11.54 -0.04 -0.24 16 3 C -0.14 -3.66 9.18 71.98 0.66 -3.00 16 4 C -0.04 -1.49 5.83 24.82 0.14 -1.35 16 5 C -0.18 -8.65 9.82 22.21 0.22 -8.43 16 6 C -0.16 -8.17 5.18 -19.80 -0.10 -8.27 16 7 C -0.11 -5.07 8.21 25.02 0.21 -4.87 16 8 O -0.17 -7.62 10.66 -5.86 -0.06 -7.68 16 9 C 0.00 0.12 6.32 30.57 0.19 0.31 16 10 C -0.08 -3.22 3.20 -9.70 -0.03 -3.26 16 11 H 0.09 3.56 7.74 -2.39 -0.02 3.54 16 12 C -0.12 -4.22 8.45 71.98 0.61 -3.62 16 13 C 0.29 15.06 0.76 -11.53 -0.01 15.05 16 14 O -0.59 -31.74 11.72 -148.98 -1.75 -33.48 16 15 C -0.56 -30.80 8.25 25.60 0.21 -30.59 16 16 H 0.06 3.11 7.57 -2.91 -0.02 3.09 16 17 C 0.03 1.78 5.26 84.65 0.44 2.23 16 18 N -0.89 -48.86 9.65 21.45 0.21 -48.65 16 19 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 2.83 8.10 -2.39 -0.02 2.81 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.13 6.41 7.53 -2.91 -0.02 6.39 16 31 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.10 3.01 7.91 -2.39 -0.02 2.99 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.95 7.78 -2.39 -0.02 1.93 16 35 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.37 20.67 7.32 -74.06 -0.54 20.12 16 37 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -63.18 301.39 4.10 -59.07 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.51 Total: 34.06 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 3.17 Total: -48.73 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.21 Total: -48.65 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.81 Total: -41.17 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.18 4.10 -59.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.715 kcal (2) G-P(sol) polarization free energy of solvation -63.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds