Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47059 * 2 1 4 4 C 1.50701 * 109.47158 * 119.99901 * 2 1 3 5 5 C 1.34447 * 125.78808 * 120.02117 * 4 2 1 6 6 C 1.41513 * 106.80407 * 179.97438 * 5 4 2 7 7 C 1.34284 * 107.02460 * 0.02562 * 6 5 4 8 8 O 1.34198 * 125.78719 * 300.02594 * 4 2 1 9 9 C 1.51440 * 110.25761 * 179.97438 * 7 6 5 10 10 C 1.54451 * 104.99532 * 16.87756 * 9 7 6 11 11 H 1.09001 * 110.98297 * 216.27545 * 10 9 7 12 12 C 1.53002 * 110.95186 * 92.57478 * 10 9 7 13 13 C 1.51194 * 142.39640 * 180.02562 * 6 5 4 14 14 O 1.42899 * 110.35227 * 282.02132 * 13 6 5 15 15 C 1.50707 * 110.43898 * 44.25177 * 13 6 5 16 16 H 1.08007 * 119.99828 * 114.77327 * 15 13 6 17 17 C 1.37871 * 119.99790 * 294.77385 * 15 13 6 18 18 N 1.31509 * 120.00303 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99763 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47008 * 59.99994 * 19 17 15 21 21 H 1.48491 * 109.47106 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47084 * 300.00190 * 19 17 15 23 23 H 1.09000 * 109.47336 * 299.99849 * 1 2 3 24 24 H 1.08997 * 109.47432 * 60.00426 * 1 2 3 25 25 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46989 * 239.99461 * 2 1 3 27 27 H 1.09003 * 109.47303 * 299.99923 * 3 2 1 28 28 H 1.09002 * 109.47660 * 59.99872 * 3 2 1 29 29 H 1.09005 * 109.47374 * 179.97438 * 3 2 1 30 30 H 1.07997 * 126.60055 * 0.02744 * 5 4 2 31 31 H 1.08991 * 110.33668 * 257.99725 * 9 7 6 32 32 H 1.09000 * 110.33593 * 135.75338 * 9 7 6 33 33 H 1.08998 * 109.47384 * 299.84019 * 12 10 9 34 34 H 1.08999 * 109.47069 * 179.83937 * 12 10 9 35 35 H 1.09003 * 109.46768 * 59.83930 * 12 10 9 36 36 H 0.96700 * 113.99562 * 64.50188 * 14 13 6 37 37 H 0.97006 * 120.00033 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8089 -1.8079 1.2428 6 6 3.0383 -2.1315 2.6012 7 6 2.3897 -1.2156 3.3385 8 8 1.7804 -0.3549 2.4997 9 6 2.5869 -1.4948 4.8138 10 6 3.7961 -2.4534 4.8809 11 1 3.6683 -3.1878 5.6762 12 6 5.1013 -1.6759 5.0626 13 6 3.7443 -3.1282 3.4923 14 8 3.0020 -4.3474 3.5600 15 6 5.1387 -3.3922 2.9853 16 1 5.9931 -3.1002 3.5780 17 6 5.3236 -4.0064 1.7649 18 7 4.2833 -4.3614 1.0430 19 14 7.0521 -4.3330 1.1361 20 1 7.7688 -5.2135 2.0932 21 1 6.9791 -4.9978 -0.1897 22 1 7.7823 -3.0466 1.0047 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.1858 -2.3396 0.3817 31 1 1.7007 -1.9732 5.2305 32 1 2.8062 -0.5705 5.3483 33 1 5.2410 -0.9986 4.2201 34 1 5.9367 -2.3744 5.1097 35 1 5.0558 -1.1008 5.9875 36 1 2.9362 -4.8151 2.7162 37 1 4.4135 -4.7938 0.1845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260563320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = -31.794900 kcal Electronic energy + Delta-G solvation = -19362.030971 eV Core-core repulsion = 16492.223570 eV Total energy + Delta-G solvation = -2869.807402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.68303 -37.59167 -35.05983 -33.55773 -32.08089 -31.18502 -28.82850 -26.95374 -26.85910 -24.88713 -23.42708 -21.37738 -20.26563 -19.01246 -18.02668 -16.64879 -15.85620 -15.24099 -15.03019 -14.66883 -14.02725 -13.91312 -13.35297 -12.97944 -12.82480 -12.71497 -12.11513 -11.99914 -11.86994 -11.48315 -11.25005 -11.01150 -10.96146 -10.91407 -10.83978 -10.67195 -10.48608 -10.31070 -10.12532 -9.86563 -9.33832 -8.50806 -8.42633 -8.09994 -7.11852 -6.13896 -4.21481 2.72434 3.25813 3.30506 3.33502 3.48915 3.87860 4.34635 5.00525 5.13481 5.16984 5.39244 5.50170 5.63392 5.75628 5.77765 5.83619 5.99969 6.01498 6.12616 6.17784 6.22275 6.35139 6.44236 6.45353 6.52187 6.53416 6.63497 6.90795 6.98945 7.12360 7.23634 7.29164 7.56205 7.76770 7.85670 8.14550 8.34135 8.79123 9.44648 9.57797 10.91866 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.009411 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.443989 B = 2974.433324 C = 3721.714379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 C -0.145 4.145 4 C -0.058 4.058 5 C -0.138 4.138 6 C -0.131 4.131 7 C -0.098 4.098 8 O -0.174 6.174 9 C -0.009 4.009 10 C -0.075 4.075 11 H 0.082 0.918 12 C -0.124 4.124 13 C 0.306 3.694 14 O -0.587 6.587 15 C -0.533 4.533 16 H 0.071 0.929 17 C 0.072 3.928 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.385 0.615 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 7.206 -0.152 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 C -0.202 4.202 4 C -0.106 4.106 5 C -0.157 4.157 6 C -0.133 4.133 7 C -0.147 4.147 8 O -0.073 6.073 9 C -0.046 4.046 10 C -0.093 4.093 11 H 0.101 0.899 12 C -0.181 4.181 13 C 0.267 3.733 14 O -0.397 6.397 15 C -0.570 4.570 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.203 1.203 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.236 0.764 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.111 7.527 0.392 8.586 hybrid contribution 1.028 -0.453 -1.310 1.726 sum -3.083 7.074 -0.918 7.771 Atomic orbital electron populations 1.21841 0.94638 1.02176 1.01553 1.19529 0.95540 0.95278 0.91719 1.21844 1.01501 0.95327 1.01568 1.22095 1.05728 0.99627 0.83190 1.21256 1.00062 0.96036 0.98366 1.22109 0.98992 0.99302 0.92940 1.23018 1.02129 0.94235 0.95351 1.83584 1.60795 1.47890 1.15040 1.20666 0.99157 0.98883 0.85882 1.21767 0.92924 0.95689 0.98968 0.89948 1.21674 0.97152 0.99596 0.99644 1.17570 0.88821 0.80209 0.86742 1.86092 1.76768 1.37724 1.39107 1.21847 0.92619 1.38879 1.03699 0.91067 1.25001 0.97049 0.94720 0.96212 1.69634 1.29256 1.40952 1.13305 0.86616 0.84671 0.78499 0.77986 1.20128 1.21232 1.20257 0.92493 0.92525 0.92342 0.88973 0.92522 0.92475 0.92364 0.83481 0.90824 0.91750 0.92488 0.91616 0.94447 0.76373 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 37.16 0.34 -1.65 16 2 C 0.00 -0.04 3.32 -91.78 -0.31 -0.34 16 3 C -0.15 -2.00 9.17 37.15 0.34 -1.66 16 4 C -0.06 -1.20 5.83 -35.65 -0.21 -1.40 16 5 C -0.14 -3.30 10.04 -39.67 -0.40 -3.70 16 6 C -0.13 -3.29 5.42 -104.53 -0.57 -3.85 16 7 C -0.10 -2.25 8.21 -35.34 -0.29 -2.54 16 8 O -0.17 -3.83 10.66 4.76 0.05 -3.78 16 9 C -0.01 -0.17 6.34 -26.76 -0.17 -0.34 16 10 C -0.07 -1.59 3.33 -89.09 -0.30 -1.89 16 11 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 12 C -0.12 -2.37 7.94 37.16 0.30 -2.07 16 13 C 0.31 7.75 0.83 -91.91 -0.08 7.68 16 14 O -0.59 -15.74 13.04 -35.23 -0.46 -16.20 16 15 C -0.53 -14.15 7.64 -34.44 -0.26 -14.41 16 16 H 0.07 1.84 5.26 -52.48 -0.28 1.56 16 17 C 0.07 1.90 5.25 -17.82 -0.09 1.80 16 18 N -0.89 -23.62 9.17 55.43 0.51 -23.11 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.15 3.65 6.90 -52.49 -0.36 3.29 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 33 H 0.06 1.17 8.04 -51.93 -0.42 0.76 16 34 H 0.06 1.27 6.49 -51.93 -0.34 0.93 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.38 10.58 6.98 45.56 0.32 10.90 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -28.66 297.46 -6.97 -35.64 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.84 Total: 11.70 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -1.69 Total: -24.38 kcal Atomic # 7 Polarization: -23.62 SS G_CDS: 0.51 Total: -23.11 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.41 Total: -19.97 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.66 -6.97 -35.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.841 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds