Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47059 * 2 1 4 4 C 1.50701 * 109.47158 * 119.99901 * 2 1 3 5 5 C 1.34447 * 125.78808 * 120.02117 * 4 2 1 6 6 C 1.41513 * 106.80407 * 179.97438 * 5 4 2 7 7 C 1.34284 * 107.02460 * 0.02562 * 6 5 4 8 8 O 1.34198 * 125.78719 * 300.02594 * 4 2 1 9 9 C 1.51440 * 110.25761 * 179.97438 * 7 6 5 10 10 C 1.54451 * 104.99532 * 16.87756 * 9 7 6 11 11 H 1.09001 * 110.98297 * 216.27545 * 10 9 7 12 12 C 1.53002 * 110.95186 * 92.57478 * 10 9 7 13 13 C 1.51194 * 142.39640 * 180.02562 * 6 5 4 14 14 O 1.42899 * 110.35227 * 282.02132 * 13 6 5 15 15 C 1.50707 * 110.43898 * 44.25177 * 13 6 5 16 16 H 1.08007 * 119.99828 * 114.77327 * 15 13 6 17 17 C 1.37871 * 119.99790 * 294.77385 * 15 13 6 18 18 N 1.31509 * 120.00303 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99763 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47008 * 59.99994 * 19 17 15 21 21 H 1.48491 * 109.47106 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47084 * 300.00190 * 19 17 15 23 23 H 1.09000 * 109.47336 * 299.99849 * 1 2 3 24 24 H 1.08997 * 109.47432 * 60.00426 * 1 2 3 25 25 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46989 * 239.99461 * 2 1 3 27 27 H 1.09003 * 109.47303 * 299.99923 * 3 2 1 28 28 H 1.09002 * 109.47660 * 59.99872 * 3 2 1 29 29 H 1.09005 * 109.47374 * 179.97438 * 3 2 1 30 30 H 1.07997 * 126.60055 * 0.02744 * 5 4 2 31 31 H 1.08991 * 110.33668 * 257.99725 * 9 7 6 32 32 H 1.09000 * 110.33593 * 135.75338 * 9 7 6 33 33 H 1.08998 * 109.47384 * 299.84019 * 12 10 9 34 34 H 1.08999 * 109.47069 * 179.83937 * 12 10 9 35 35 H 1.09003 * 109.46768 * 59.83930 * 12 10 9 36 36 H 0.96700 * 113.99562 * 64.50188 * 14 13 6 37 37 H 0.97006 * 120.00033 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8089 -1.8079 1.2428 6 6 3.0383 -2.1315 2.6012 7 6 2.3897 -1.2156 3.3385 8 8 1.7804 -0.3549 2.4997 9 6 2.5869 -1.4948 4.8138 10 6 3.7961 -2.4534 4.8809 11 1 3.6683 -3.1878 5.6762 12 6 5.1013 -1.6759 5.0626 13 6 3.7443 -3.1282 3.4923 14 8 3.0020 -4.3474 3.5600 15 6 5.1387 -3.3922 2.9853 16 1 5.9931 -3.1002 3.5780 17 6 5.3236 -4.0064 1.7649 18 7 4.2833 -4.3614 1.0430 19 14 7.0521 -4.3330 1.1361 20 1 7.7688 -5.2135 2.0932 21 1 6.9791 -4.9978 -0.1897 22 1 7.7823 -3.0466 1.0047 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.1858 -2.3396 0.3817 31 1 1.7007 -1.9732 5.2305 32 1 2.8062 -0.5705 5.3483 33 1 5.2410 -0.9986 4.2201 34 1 5.9367 -2.3744 5.1097 35 1 5.0558 -1.1008 5.9875 36 1 2.9362 -4.8151 2.7162 37 1 4.4135 -4.7938 0.1845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260563320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = -48.985935 kcal Electronic energy + Delta-G solvation = -19362.776430 eV Core-core repulsion = 16492.223570 eV Total energy + Delta-G solvation = -2870.552861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.41597 -39.36433 -36.39819 -35.40309 -34.10677 -32.91935 -30.46509 -28.71324 -28.04147 -26.50033 -25.29833 -22.79149 -21.98116 -20.76724 -19.75076 -18.61965 -17.53065 -17.06306 -16.83837 -16.07520 -15.83512 -15.31643 -14.98985 -14.62491 -14.54532 -13.95058 -13.75179 -13.61912 -13.36450 -13.03048 -13.02981 -12.76604 -12.54906 -12.36813 -12.30826 -12.15445 -12.06440 -11.88469 -11.72628 -11.66139 -11.15317 -10.49401 -10.31570 -10.03594 -8.83438 -8.12560 -6.26366 1.01736 1.40320 1.40789 1.47558 1.83671 2.05001 2.41184 3.13043 3.55810 3.92009 3.94015 4.05462 4.21078 4.26863 4.39369 4.52096 4.58837 4.73332 4.77539 4.77816 4.87407 4.92505 4.96262 5.03140 5.06596 5.21204 5.28349 5.34076 5.34776 5.38981 5.56540 5.58962 5.72224 5.84696 5.96534 6.19034 6.56968 6.78098 7.39765 7.47959 8.91304 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.009411 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.443989 B = 2974.433324 C = 3721.714379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.139 4.139 4 C -0.035 4.035 5 C -0.181 4.181 6 C -0.167 4.167 7 C -0.105 4.105 8 O -0.173 6.173 9 C -0.003 4.003 10 C -0.076 4.076 11 H 0.088 0.912 12 C -0.115 4.115 13 C 0.286 3.714 14 O -0.597 6.597 15 C -0.553 4.553 16 H 0.073 0.927 17 C 0.029 3.971 18 N -0.905 5.905 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.375 0.625 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 8.983 0.058 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.196 4.196 4 C -0.085 4.085 5 C -0.201 4.201 6 C -0.169 4.169 7 C -0.154 4.154 8 O -0.071 6.071 9 C -0.040 4.040 10 C -0.095 4.095 11 H 0.107 0.893 12 C -0.172 4.172 13 C 0.247 3.753 14 O -0.407 6.407 15 C -0.591 4.591 16 H 0.090 0.910 17 C -0.171 4.171 18 N -0.546 5.546 19 Si 0.777 3.223 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.202 1.202 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.225 0.775 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.435 9.313 0.618 10.333 hybrid contribution 1.102 -1.010 -1.421 2.063 sum -3.333 8.302 -0.804 8.982 Atomic orbital electron populations 1.21807 0.92626 1.01963 1.03205 1.19839 0.97180 0.96243 0.89317 1.21810 1.00775 0.93813 1.03232 1.22909 1.03179 0.98269 0.84093 1.21264 1.02843 0.98151 0.97813 1.22265 1.00565 1.00308 0.93784 1.23577 1.01483 0.93638 0.96703 1.83610 1.60489 1.47600 1.15412 1.20756 0.98925 1.00078 0.84192 1.21850 0.94788 0.96143 0.96700 0.89332 1.21595 0.95724 0.99118 1.00775 1.17970 0.88097 0.79832 0.89378 1.86077 1.77239 1.38811 1.38537 1.22163 0.93573 1.39227 1.04134 0.90951 1.25671 1.00127 0.94785 0.96503 1.69741 1.30547 1.41052 1.13239 0.85735 0.80950 0.78174 0.77439 1.19774 1.20989 1.20219 0.92752 0.88956 0.93520 0.88313 0.88970 0.92701 0.93508 0.85366 0.89535 0.88307 0.94512 0.92440 0.90335 0.77467 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.18 71.98 0.66 -2.82 16 2 C -0.01 -0.22 3.32 -11.54 -0.04 -0.26 16 3 C -0.14 -3.48 9.17 71.98 0.66 -2.82 16 4 C -0.04 -1.46 5.83 24.82 0.14 -1.31 16 5 C -0.18 -8.93 10.04 22.21 0.22 -8.71 16 6 C -0.17 -8.53 5.42 -19.80 -0.11 -8.63 16 7 C -0.10 -4.75 8.21 25.02 0.21 -4.55 16 8 O -0.17 -7.44 10.66 -5.87 -0.06 -7.50 16 9 C 0.00 -0.10 6.34 30.58 0.19 0.10 16 10 C -0.08 -3.17 3.33 -9.80 -0.03 -3.20 16 11 H 0.09 3.52 8.10 -2.39 -0.02 3.50 16 12 C -0.12 -4.24 7.94 71.98 0.57 -3.66 16 13 C 0.29 14.73 0.83 -11.63 -0.01 14.72 16 14 O -0.60 -32.97 13.04 -148.98 -1.94 -34.91 16 15 C -0.55 -29.96 7.64 25.60 0.20 -29.76 16 16 H 0.07 3.78 5.26 -2.91 -0.02 3.77 16 17 C 0.03 1.57 5.25 84.65 0.44 2.01 16 18 N -0.91 -49.58 9.17 21.44 0.20 -49.39 16 19 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.10 2.83 8.10 -2.39 -0.02 2.81 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 30 H 0.13 6.69 6.90 -2.91 -0.02 6.67 16 31 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.10 3.01 7.91 -2.39 -0.02 2.99 16 33 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 34 H 0.06 2.17 6.49 -2.39 -0.02 2.16 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.38 21.57 6.98 -74.06 -0.52 21.06 16 37 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 Total: -1.00 -63.25 297.46 3.88 -59.37 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.55 Total: 36.21 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 3.11 Total: -48.89 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.20 Total: -49.39 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -2.00 Total: -42.41 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -63.25 3.88 -59.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.387 kcal (2) G-P(sol) polarization free energy of solvation -63.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds