Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00300 * 2 1 4 4 C 1.38765 * 120.02888 * 179.97438 * 3 2 1 5 5 C 1.38180 * 120.05180 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.94226 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47053 * 90.00415 * 6 5 4 8 8 H 1.09001 * 109.47002 * 304.99539 * 7 6 5 9 9 C 1.52997 * 109.47164 * 64.99801 * 7 6 5 10 10 C 1.50698 * 109.47184 * 185.00135 * 7 6 5 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 7 6 13 13 N 1.31520 * 119.99809 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 119.99912 * 359.97438 * 12 10 7 15 15 H 1.48498 * 109.47123 * 90.00333 * 14 12 10 16 16 H 1.48506 * 109.46940 * 210.00455 * 14 12 10 17 17 H 1.48493 * 109.47121 * 329.99876 * 14 12 10 18 18 C 1.38167 * 120.11083 * 0.28013 * 5 4 3 19 19 C 1.38776 * 120.05604 * 359.48876 * 18 5 4 20 20 O 1.35894 * 120.02819 * 180.23751 * 19 18 5 21 21 C 1.42904 * 116.99830 * 180.25405 * 20 19 18 22 22 C 1.38634 * 120.02313 * 0.02562 * 3 2 1 23 23 H 1.08996 * 109.47465 * 300.00572 * 1 2 3 24 24 H 1.08998 * 109.46397 * 60.00219 * 1 2 3 25 25 H 1.08992 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.97716 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47516 * 329.99882 * 6 5 4 28 28 H 1.09004 * 109.47523 * 209.99954 * 6 5 4 29 29 H 1.09001 * 109.47375 * 59.99966 * 9 7 6 30 30 H 1.09002 * 109.46777 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47140 * 299.99948 * 9 7 6 32 32 H 0.97004 * 119.99097 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.97286 * 179.72281 * 18 5 4 34 34 H 1.09006 * 109.46803 * 299.99738 * 21 20 19 35 35 H 1.08996 * 109.47386 * 59.99065 * 21 20 19 36 36 H 1.09005 * 109.47301 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.05775 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4318 1.2841 0.0005 5 6 4.0597 2.5150 0.0000 6 6 5.5647 2.5917 0.0012 7 6 6.0752 2.6165 -1.4410 8 1 5.6845 1.7532 -1.9796 9 6 5.6050 3.9010 -2.1264 10 6 7.5815 2.5692 -1.4416 11 1 8.1207 2.5262 -0.5068 12 6 8.2711 2.5819 -2.6354 13 7 9.5857 2.5412 -2.6358 14 14 7.3384 2.6570 -4.2521 15 1 7.1347 4.0757 -4.6406 16 1 8.1194 1.9621 -5.3068 17 1 6.0198 1.9928 -4.0941 18 6 3.3099 3.6756 0.0048 19 6 1.9238 3.6077 -0.0006 20 8 1.1870 4.7495 -0.0008 21 6 -0.2346 4.6042 -0.0008 22 6 1.2915 2.3739 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0201 0.3784 0.0005 27 1 5.9725 1.7219 0.5161 28 1 5.8819 3.4995 0.5145 29 1 5.9957 4.7643 -1.5878 30 1 5.9683 3.9184 -3.1540 31 1 4.5155 3.9352 -2.1260 32 1 10.0708 2.5497 -3.4758 33 1 3.8030 4.6365 0.0089 34 1 -0.5437 4.0560 -0.8908 35 1 -0.5439 4.0561 0.8891 36 1 -0.7006 5.5896 -0.0005 37 1 0.2129 2.3190 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -56.810792 kcal Electronic energy + Delta-G solvation = -18323.132525 eV Core-core repulsion = 15452.240353 eV Total energy + Delta-G solvation = -2870.892172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43082 -38.75731 -37.28903 -34.62597 -31.91328 -30.20586 -29.91676 -28.12288 -26.63461 -25.92391 -24.78886 -22.22860 -21.20167 -19.51101 -17.95453 -16.92744 -16.56141 -15.96507 -15.81586 -15.78278 -15.51138 -14.75331 -14.72069 -13.67539 -13.34582 -12.99978 -12.89139 -12.49032 -12.23121 -12.04792 -11.88934 -11.63759 -11.47256 -11.20759 -11.05801 -10.92542 -10.52658 -10.11732 -10.04540 -9.74973 -9.27780 -8.92757 -8.49881 -8.23981 -7.78459 -6.02112 -4.00927 1.56957 1.70160 3.25479 3.30183 3.33471 3.43844 3.47362 3.97613 4.47447 4.82701 4.91439 4.92634 4.98788 5.00580 5.20865 5.27897 5.31877 5.32466 5.37548 5.61376 5.76726 5.83801 6.18650 6.31187 6.39455 6.43133 6.47537 6.67046 6.82408 6.85083 6.96054 7.04038 7.23633 7.28645 7.60086 7.61655 7.82905 8.56633 9.01488 9.61081 11.11125 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.005816 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.593944 B = 4812.794488 C = 5234.376945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.160 3.840 4 C -0.185 4.185 5 C 0.016 3.984 6 C -0.067 4.067 7 C 0.016 3.984 8 H 0.029 0.971 9 C -0.151 4.151 10 C -0.512 4.512 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.903 5.903 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.299 1.299 17 H -0.266 1.266 18 C -0.182 4.182 19 C 0.158 3.842 20 O -0.316 6.316 21 C 0.029 3.971 22 C -0.311 4.311 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.133 0.867 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.132 0.868 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.093 -0.110 5.487 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.114 3.886 4 C -0.204 4.204 5 C 0.016 3.984 6 C -0.104 4.104 7 C -0.003 4.003 8 H 0.047 0.953 9 C -0.208 4.208 10 C -0.550 4.550 11 H 0.093 0.907 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.227 1.227 17 H -0.191 1.191 18 C -0.201 4.201 19 C 0.113 3.887 20 O -0.229 6.229 21 C -0.066 4.066 22 C -0.330 4.330 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.796 -0.107 5.380 21.480 hybrid contribution -0.997 0.091 -1.055 1.454 sum -21.792 -0.017 4.325 22.217 Atomic orbital electron populations 1.22991 0.79033 1.03592 1.01007 1.86091 1.20889 1.27183 1.88715 1.18711 0.92049 0.83236 0.94558 1.20311 0.90720 0.98854 1.10483 1.19923 0.97333 0.90699 0.90480 1.20734 0.86839 1.02631 1.00208 1.19111 0.96694 0.93898 0.90573 0.95317 1.22244 0.98220 1.00529 0.99788 1.21040 0.88731 1.50683 0.94565 0.90721 1.24992 0.94661 0.94500 0.99008 1.69907 1.06283 1.51087 1.26865 0.86826 0.79945 0.77764 0.83526 1.20745 1.22717 1.19112 1.20309 0.89791 0.99638 1.10369 1.18720 0.91141 0.84158 0.94658 1.86087 1.18693 1.29377 1.88734 1.22993 0.79132 1.03485 1.01018 1.21065 0.99811 0.92122 1.20022 0.92982 0.92959 0.88420 0.84950 0.90924 0.91097 0.93029 0.94632 0.94774 0.92743 0.84990 0.92952 0.92985 0.88433 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.45 10.50 -19.44 -0.20 -4.66 16 3 C 0.16 2.50 6.68 -39.24 -0.26 2.23 16 4 C -0.18 -3.19 9.64 -39.41 -0.38 -3.57 16 5 C 0.02 0.29 4.70 -104.67 -0.49 -0.21 16 6 C -0.07 -1.33 4.78 -27.88 -0.13 -1.46 16 7 C 0.02 0.38 1.88 -91.77 -0.17 0.21 16 8 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 9 C -0.15 -3.37 8.25 37.16 0.31 -3.06 16 10 C -0.51 -14.38 9.14 -34.44 -0.31 -14.69 16 11 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 13 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 14 Si 0.89 22.64 24.37 -169.99 -4.14 18.50 16 15 H -0.28 -6.99 6.87 56.52 0.39 -6.60 16 16 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 17 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 18 C -0.18 -3.10 7.91 -39.41 -0.31 -3.41 16 19 C 0.16 2.46 6.68 -39.24 -0.26 2.20 16 20 O -0.32 -4.41 10.50 -19.41 -0.20 -4.61 16 21 C 0.03 0.26 9.81 101.05 0.99 1.26 16 22 C -0.31 -4.41 8.02 -39.29 -0.32 -4.73 16 23 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 28 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 31 H 0.03 0.68 6.28 -51.93 -0.33 0.36 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 33 H 0.13 2.19 8.05 -52.49 -0.42 1.76 16 34 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 35 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.13 1.42 4.54 -52.49 -0.24 1.18 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -32.08 297.52 -5.00 -37.07 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.25 Total: -1.60 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.45 Total: -22.05 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.13 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.41 Total: -9.27 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.50 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.08 -5.00 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.737 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds