Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00300 * 2 1 4 4 C 1.38765 * 120.02888 * 179.97438 * 3 2 1 5 5 C 1.38180 * 120.05180 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.94226 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47053 * 90.00415 * 6 5 4 8 8 H 1.09001 * 109.47002 * 304.99539 * 7 6 5 9 9 C 1.52997 * 109.47164 * 64.99801 * 7 6 5 10 10 C 1.50698 * 109.47184 * 185.00135 * 7 6 5 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 7 6 13 13 N 1.31520 * 119.99809 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 119.99912 * 359.97438 * 12 10 7 15 15 H 1.48498 * 109.47123 * 90.00333 * 14 12 10 16 16 H 1.48506 * 109.46940 * 210.00455 * 14 12 10 17 17 H 1.48493 * 109.47121 * 329.99876 * 14 12 10 18 18 C 1.38167 * 120.11083 * 0.28013 * 5 4 3 19 19 C 1.38776 * 120.05604 * 359.48876 * 18 5 4 20 20 O 1.35894 * 120.02819 * 180.23751 * 19 18 5 21 21 C 1.42904 * 116.99830 * 180.25405 * 20 19 18 22 22 C 1.38634 * 120.02313 * 0.02562 * 3 2 1 23 23 H 1.08996 * 109.47465 * 300.00572 * 1 2 3 24 24 H 1.08998 * 109.46397 * 60.00219 * 1 2 3 25 25 H 1.08992 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.97716 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47516 * 329.99882 * 6 5 4 28 28 H 1.09004 * 109.47523 * 209.99954 * 6 5 4 29 29 H 1.09001 * 109.47375 * 59.99966 * 9 7 6 30 30 H 1.09002 * 109.46777 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47140 * 299.99948 * 9 7 6 32 32 H 0.97004 * 119.99097 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.97286 * 179.72281 * 18 5 4 34 34 H 1.09006 * 109.46803 * 299.99738 * 21 20 19 35 35 H 1.08996 * 109.47386 * 59.99065 * 21 20 19 36 36 H 1.09005 * 109.47301 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.05775 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4318 1.2841 0.0005 5 6 4.0597 2.5150 0.0000 6 6 5.5647 2.5917 0.0012 7 6 6.0752 2.6165 -1.4410 8 1 5.6845 1.7532 -1.9796 9 6 5.6050 3.9010 -2.1264 10 6 7.5815 2.5692 -1.4416 11 1 8.1207 2.5262 -0.5068 12 6 8.2711 2.5819 -2.6354 13 7 9.5857 2.5412 -2.6358 14 14 7.3384 2.6570 -4.2521 15 1 7.1347 4.0757 -4.6406 16 1 8.1194 1.9621 -5.3068 17 1 6.0198 1.9928 -4.0941 18 6 3.3099 3.6756 0.0048 19 6 1.9238 3.6077 -0.0006 20 8 1.1870 4.7495 -0.0008 21 6 -0.2346 4.6042 -0.0008 22 6 1.2915 2.3739 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0201 0.3784 0.0005 27 1 5.9725 1.7219 0.5161 28 1 5.8819 3.4995 0.5145 29 1 5.9957 4.7643 -1.5878 30 1 5.9683 3.9184 -3.1540 31 1 4.5155 3.9352 -2.1260 32 1 10.0708 2.5497 -3.4758 33 1 3.8030 4.6365 0.0089 34 1 -0.5437 4.0560 -0.8908 35 1 -0.5439 4.0561 0.8891 36 1 -0.7006 5.5896 -0.0005 37 1 0.2129 2.3190 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -77.706737 kcal Electronic energy + Delta-G solvation = -18324.038641 eV Core-core repulsion = 15452.240353 eV Total energy + Delta-G solvation = -2871.798288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.54720 -39.75715 -38.61490 -36.30596 -33.91428 -31.47711 -31.22975 -28.99523 -27.62298 -27.31316 -26.78663 -23.39304 -22.60796 -21.09459 -19.23268 -18.61522 -17.92562 -17.02767 -16.99452 -16.89698 -16.69039 -16.37333 -15.63709 -15.28515 -14.94881 -14.56573 -14.33490 -13.96359 -13.56727 -13.37060 -13.10736 -12.94232 -12.73238 -12.44374 -12.32794 -12.18523 -12.09005 -12.02503 -11.62744 -11.41245 -11.07362 -10.97579 -10.69504 -9.49273 -8.96629 -8.28020 -6.30703 0.34241 0.48939 1.30867 1.36428 1.47257 2.29129 2.34102 2.37080 2.73882 3.08357 3.79326 3.97060 4.11997 4.25887 4.30194 4.34634 4.36839 4.39161 4.43605 4.44707 4.56028 4.69006 4.71062 4.72861 4.81106 5.00466 5.06732 5.13554 5.22855 5.24037 5.46921 5.60087 5.62069 5.76468 5.82626 6.23373 6.33107 6.55006 6.76147 7.34717 8.88784 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.005816 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.593944 B = 4812.794488 C = 5234.376945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.161 3.839 4 C -0.207 4.207 5 C 0.005 3.995 6 C -0.058 4.058 7 C 0.016 3.984 8 H 0.020 0.980 9 C -0.145 4.145 10 C -0.515 4.515 11 H 0.039 0.961 12 C 0.013 3.987 13 N -0.950 5.950 14 Si 0.948 3.052 15 H -0.268 1.268 16 H -0.299 1.299 17 H -0.253 1.253 18 C -0.198 4.198 19 C 0.161 3.839 20 O -0.330 6.330 21 C 0.016 3.984 22 C -0.300 4.300 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.265 0.735 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.925 0.221 5.026 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.116 3.884 4 C -0.226 4.226 5 C 0.005 3.995 6 C -0.096 4.096 7 C -0.002 4.002 8 H 0.038 0.962 9 C -0.202 4.202 10 C -0.553 4.553 11 H 0.058 0.942 12 C -0.183 4.183 13 N -0.590 5.590 14 Si 0.775 3.225 15 H -0.194 1.194 16 H -0.227 1.227 17 H -0.177 1.177 18 C -0.217 4.217 19 C 0.115 3.885 20 O -0.244 6.244 21 C -0.078 4.078 22 C -0.319 4.319 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.664 0.226 4.933 25.153 hybrid contribution 0.066 -0.043 -0.795 0.798 sum -24.598 0.183 4.139 24.944 Atomic orbital electron populations 1.23387 0.76303 1.05766 1.02325 1.86080 1.23714 1.26485 1.88348 1.18720 0.91608 0.84402 0.93709 1.20335 0.92046 0.98311 1.11868 1.19587 0.95769 0.91630 0.92548 1.20502 0.88902 1.02417 0.97740 1.19031 0.93620 0.94372 0.93215 0.96161 1.22141 0.99737 0.99558 0.98758 1.21372 0.91294 1.49445 0.93186 0.94226 1.25808 0.95358 0.94429 1.02738 1.70046 1.08062 1.53048 1.27891 0.85857 0.79042 0.78474 0.79084 1.19406 1.22666 1.17736 1.20313 0.90950 0.99059 1.11377 1.18736 0.90842 0.85200 0.93677 1.86079 1.21183 1.28812 1.88321 1.23389 0.76470 1.05654 1.02293 1.21341 1.01446 0.90921 1.18200 0.91373 0.91751 0.86087 0.85734 0.91605 0.91021 0.92710 0.95656 0.92387 0.92609 0.85173 0.91780 0.91447 0.86043 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.58 10.50 -92.46 -0.97 -9.55 16 3 C 0.16 4.72 6.68 22.49 0.15 4.87 16 4 C -0.21 -7.05 9.64 22.38 0.22 -6.83 16 5 C 0.00 0.18 4.70 -19.90 -0.09 0.08 16 6 C -0.06 -2.36 4.78 29.85 0.14 -2.22 16 7 C 0.02 0.78 1.88 -11.54 -0.02 0.76 16 8 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 9 C -0.14 -6.32 8.25 71.98 0.59 -5.73 16 10 C -0.51 -29.79 9.14 25.60 0.23 -29.55 16 11 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 12 C 0.01 0.80 5.45 84.65 0.46 1.26 16 13 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 14 Si 0.95 46.76 24.37 68.60 1.67 48.43 16 15 H -0.27 -12.61 6.87 99.48 0.68 -11.92 16 16 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 17 H -0.25 -11.86 6.53 99.48 0.65 -11.21 16 18 C -0.20 -6.50 7.91 22.38 0.18 -6.32 16 19 C 0.16 4.59 6.68 22.49 0.15 4.74 16 20 O -0.33 -8.20 10.50 -92.36 -0.97 -9.17 16 21 C 0.02 0.22 9.81 113.37 1.11 1.34 16 22 C -0.30 -7.53 8.02 22.46 0.18 -7.35 16 23 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 24 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 25 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 27 H 0.07 2.68 8.08 -2.39 -0.02 2.66 16 28 H 0.07 2.82 8.08 -2.39 -0.02 2.80 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.02 1.14 3.27 -2.39 -0.01 1.13 16 31 H 0.06 2.24 6.28 -2.39 -0.01 2.22 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.13 4.20 8.05 -2.91 -0.02 4.18 16 34 H 0.06 0.77 7.66 -2.38 -0.02 0.75 16 35 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 36 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.16 2.81 4.54 -2.91 -0.01 2.80 16 Total: -1.00 -70.33 297.52 5.42 -64.91 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.98 Total: 9.10 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 4.42 Total: -43.60 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -1.94 Total: -18.72 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -70.33 5.42 -64.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.799 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds