Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99648 * 2 1 4 4 C 1.38770 * 120.02671 * 180.02562 * 3 2 1 5 5 C 1.38171 * 120.05581 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.95054 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47143 * 89.99850 * 6 5 4 8 8 H 1.09002 * 109.47003 * 55.00942 * 7 6 5 9 9 C 1.52996 * 109.47567 * 295.00293 * 7 6 5 10 10 C 1.50707 * 109.47397 * 175.00286 * 7 6 5 11 11 H 1.08002 * 119.99223 * 29.04563 * 10 7 6 12 12 C 1.37870 * 119.99973 * 209.04883 * 10 7 6 13 13 N 1.31511 * 120.00525 * 353.12296 * 12 10 7 14 14 Si 1.86803 * 119.99884 * 173.12833 * 12 10 7 15 15 H 1.48504 * 109.47286 * 59.99500 * 14 12 10 16 16 H 1.48493 * 109.47433 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47121 * 299.99898 * 14 12 10 18 18 C 1.38180 * 120.10972 * 0.28010 * 5 4 3 19 19 C 1.38775 * 120.05305 * 359.48287 * 18 5 4 20 20 O 1.35890 * 120.02961 * 180.23808 * 19 18 5 21 21 C 1.42901 * 117.00018 * 180.25592 * 20 19 18 22 22 C 1.38631 * 120.02573 * 0.02562 * 3 2 1 23 23 H 1.08993 * 109.47108 * 299.99965 * 1 2 3 24 24 H 1.08993 * 109.46776 * 60.00701 * 1 2 3 25 25 H 1.08997 * 109.46705 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.97523 * 0.02562 * 4 3 2 27 27 H 1.09000 * 109.46924 * 330.00088 * 6 5 4 28 28 H 1.09000 * 109.47516 * 210.00284 * 6 5 4 29 29 H 1.09002 * 109.47264 * 306.29459 * 9 7 6 30 30 H 1.09004 * 109.47015 * 66.28929 * 9 7 6 31 31 H 1.08994 * 109.47575 * 186.28397 * 9 7 6 32 32 H 0.96998 * 119.99571 * 354.58232 * 13 12 10 33 33 H 1.08001 * 119.97630 * 179.72793 * 18 5 4 34 34 H 1.08999 * 109.47314 * 299.99703 * 21 20 19 35 35 H 1.09000 * 109.47169 * 60.00326 * 21 20 19 36 36 H 1.09000 * 109.47344 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.06032 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4317 1.2843 -0.0005 5 6 4.0596 2.5152 -0.0011 6 6 5.5645 2.5921 -0.0011 7 6 6.0739 2.6174 -1.4436 8 1 5.5970 3.4358 -1.9829 9 6 5.7364 1.2909 -2.1271 10 6 7.5676 2.8176 -1.4455 11 1 8.1609 2.4635 -0.6154 12 6 8.1766 3.4529 -2.5068 13 7 7.4775 3.7632 -3.5766 14 14 9.9950 3.8728 -2.4254 15 1 10.7837 2.6264 -2.2527 16 1 10.4043 4.5467 -3.6837 17 1 10.2428 4.7786 -1.2750 18 6 3.3097 3.6758 0.0048 19 6 1.9236 3.6078 0.0003 20 8 1.1867 4.7495 0.0012 21 6 -0.2349 4.6041 0.0022 22 6 1.2914 2.3739 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 4.0200 0.3786 -0.0014 27 1 5.9728 1.7220 0.5132 28 1 5.8820 3.4996 0.5124 29 1 6.1186 0.4652 -1.5268 30 1 4.6548 1.1979 -2.2259 31 1 6.1950 1.2644 -3.1155 32 1 6.5540 3.4761 -3.6525 33 1 3.8027 4.6367 0.0088 34 1 -0.5447 4.0563 -0.8878 35 1 -0.5434 4.0558 0.8922 36 1 -0.7009 5.5894 0.0032 37 1 0.2127 2.3189 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = -70.367940 kcal Electronic energy + Delta-G solvation = -18261.330275 eV Core-core repulsion = 15389.850221 eV Total energy + Delta-G solvation = -2871.480054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37808 -38.71304 -37.21739 -34.67988 -31.80517 -30.14101 -29.40099 -28.03020 -26.58335 -25.72901 -24.38607 -22.19401 -21.17307 -19.77350 -17.93501 -16.87990 -16.60390 -15.90573 -15.76322 -15.75160 -15.47009 -14.70082 -14.01659 -13.67671 -13.39433 -13.03766 -12.80556 -12.25872 -12.19543 -11.93726 -11.59758 -11.51734 -11.17928 -11.01146 -10.96873 -10.71714 -10.56602 -10.40851 -10.05492 -9.83717 -9.41463 -8.46377 -8.24683 -8.14218 -7.73558 -6.28457 -3.99056 1.62739 1.75440 3.29723 3.34748 3.48310 3.49794 3.68561 4.03194 4.59344 4.87040 4.95215 4.97265 5.02356 5.04558 5.25420 5.31253 5.36130 5.42405 5.43957 5.68700 5.81774 5.90837 6.30414 6.43897 6.47543 6.49643 6.62769 6.77159 6.93544 6.99033 7.07632 7.14992 7.30638 7.52803 7.66569 7.71933 8.30893 8.51857 8.94284 9.72985 11.10218 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.005286 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.465284 B = 5296.161864 C = 5905.729360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.158 3.842 4 C -0.182 4.182 5 C 0.018 3.982 6 C -0.071 4.071 7 C 0.033 3.967 8 H 0.034 0.966 9 C -0.136 4.136 10 C -0.593 4.593 11 H 0.049 0.951 12 C 0.020 3.980 13 N -0.913 5.913 14 Si 1.064 2.936 15 H -0.289 1.289 16 H -0.284 1.284 17 H -0.288 1.288 18 C -0.185 4.185 19 C 0.160 3.840 20 O -0.315 6.315 21 C 0.029 3.971 22 C -0.312 4.312 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.271 0.729 33 H 0.131 0.869 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.908 -3.061 7.827 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.113 3.887 4 C -0.201 4.201 5 C 0.018 3.982 6 C -0.108 4.108 7 C 0.014 3.986 8 H 0.053 0.947 9 C -0.194 4.194 10 C -0.631 4.631 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.549 5.549 14 Si 0.893 3.107 15 H -0.215 1.215 16 H -0.209 1.209 17 H -0.215 1.215 18 C -0.204 4.204 19 C 0.115 3.885 20 O -0.229 6.229 21 C -0.066 4.066 22 C -0.331 4.331 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.547 -2.289 6.997 16.303 hybrid contribution -1.882 -0.881 0.773 2.217 sum -16.429 -3.170 7.769 18.448 Atomic orbital electron populations 1.22985 0.79078 1.03532 1.01019 1.86085 1.20861 1.27218 1.88782 1.18709 0.92043 0.83210 0.94719 1.20267 0.90601 0.98689 1.10567 1.19945 0.97395 0.90659 0.90190 1.20891 0.86811 1.01882 1.01249 1.18839 0.96473 0.93937 0.89350 0.94742 1.21989 0.97204 0.99596 1.00585 1.21923 0.91652 1.42236 1.07325 0.93304 1.25773 1.06024 0.94033 0.92556 1.70764 1.11505 1.44469 1.28130 0.83627 0.74761 0.76420 0.75932 1.21547 1.20901 1.21455 1.20298 0.89869 0.99666 1.10550 1.18707 0.91095 0.84161 0.94523 1.86091 1.18675 1.29387 1.88712 1.22989 0.79161 1.03478 1.00987 1.21046 0.99760 0.92096 1.20193 0.93022 0.92932 0.88465 0.85243 0.91900 0.91320 0.94705 0.95945 0.93804 0.91766 0.85114 0.92932 0.93033 0.88432 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.63 10.50 -19.44 -0.20 -4.84 16 3 C 0.16 2.59 6.68 -39.24 -0.26 2.33 16 4 C -0.18 -3.29 8.06 -39.41 -0.32 -3.61 16 5 C 0.02 0.35 4.72 -104.67 -0.49 -0.14 16 6 C -0.07 -1.50 4.82 -27.89 -0.13 -1.63 16 7 C 0.03 0.82 1.93 -91.77 -0.18 0.64 16 8 H 0.03 0.95 6.96 -51.93 -0.36 0.58 16 9 C -0.14 -3.20 8.42 37.16 0.31 -2.89 16 10 C -0.59 -16.54 8.30 -34.44 -0.29 -16.83 16 11 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 12 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 13 N -0.91 -27.79 13.55 55.43 0.75 -27.04 16 14 Si 1.06 25.25 29.91 -169.99 -5.08 20.17 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.19 -3.43 9.63 -39.40 -0.38 -3.81 16 19 C 0.16 2.67 6.68 -39.23 -0.26 2.41 16 20 O -0.32 -4.75 10.50 -19.39 -0.20 -4.96 16 21 C 0.03 0.29 9.81 101.05 0.99 1.28 16 22 C -0.31 -4.70 8.02 -39.29 -0.32 -5.01 16 23 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 24 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.13 2.29 8.03 -52.49 -0.42 1.87 16 27 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 31 H 0.04 1.10 7.84 -51.93 -0.41 0.70 16 32 H 0.27 8.25 6.50 -40.82 -0.27 7.99 16 33 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 35 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.13 1.51 4.54 -52.48 -0.24 1.27 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -31.78 305.78 -5.93 -37.71 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.37 Total: -0.16 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -0.43 Total: -25.50 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.75 Total: -27.04 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.41 Total: -9.79 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.78 -5.93 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.662 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds