Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99648 * 2 1 4 4 C 1.38770 * 120.02671 * 180.02562 * 3 2 1 5 5 C 1.38171 * 120.05581 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.95054 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47143 * 89.99850 * 6 5 4 8 8 H 1.09002 * 109.47003 * 55.00942 * 7 6 5 9 9 C 1.52996 * 109.47567 * 295.00293 * 7 6 5 10 10 C 1.50707 * 109.47397 * 175.00286 * 7 6 5 11 11 H 1.08002 * 119.99223 * 29.04563 * 10 7 6 12 12 C 1.37870 * 119.99973 * 209.04883 * 10 7 6 13 13 N 1.31511 * 120.00525 * 353.12296 * 12 10 7 14 14 Si 1.86803 * 119.99884 * 173.12833 * 12 10 7 15 15 H 1.48504 * 109.47286 * 59.99500 * 14 12 10 16 16 H 1.48493 * 109.47433 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47121 * 299.99898 * 14 12 10 18 18 C 1.38180 * 120.10972 * 0.28010 * 5 4 3 19 19 C 1.38775 * 120.05305 * 359.48287 * 18 5 4 20 20 O 1.35890 * 120.02961 * 180.23808 * 19 18 5 21 21 C 1.42901 * 117.00018 * 180.25592 * 20 19 18 22 22 C 1.38631 * 120.02573 * 0.02562 * 3 2 1 23 23 H 1.08993 * 109.47108 * 299.99965 * 1 2 3 24 24 H 1.08993 * 109.46776 * 60.00701 * 1 2 3 25 25 H 1.08997 * 109.46705 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.97523 * 0.02562 * 4 3 2 27 27 H 1.09000 * 109.46924 * 330.00088 * 6 5 4 28 28 H 1.09000 * 109.47516 * 210.00284 * 6 5 4 29 29 H 1.09002 * 109.47264 * 306.29459 * 9 7 6 30 30 H 1.09004 * 109.47015 * 66.28929 * 9 7 6 31 31 H 1.08994 * 109.47575 * 186.28397 * 9 7 6 32 32 H 0.96998 * 119.99571 * 354.58232 * 13 12 10 33 33 H 1.08001 * 119.97630 * 179.72793 * 18 5 4 34 34 H 1.08999 * 109.47314 * 299.99703 * 21 20 19 35 35 H 1.09000 * 109.47169 * 60.00326 * 21 20 19 36 36 H 1.09000 * 109.47344 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.06032 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4317 1.2843 -0.0005 5 6 4.0596 2.5152 -0.0011 6 6 5.5645 2.5921 -0.0011 7 6 6.0739 2.6174 -1.4436 8 1 5.5970 3.4358 -1.9829 9 6 5.7364 1.2909 -2.1271 10 6 7.5676 2.8176 -1.4455 11 1 8.1609 2.4635 -0.6154 12 6 8.1766 3.4529 -2.5068 13 7 7.4775 3.7632 -3.5766 14 14 9.9950 3.8728 -2.4254 15 1 10.7837 2.6264 -2.2527 16 1 10.4043 4.5467 -3.6837 17 1 10.2428 4.7786 -1.2750 18 6 3.3097 3.6758 0.0048 19 6 1.9236 3.6078 0.0003 20 8 1.1867 4.7495 0.0012 21 6 -0.2349 4.6041 0.0022 22 6 1.2914 2.3739 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 4.0200 0.3786 -0.0014 27 1 5.9728 1.7220 0.5132 28 1 5.8820 3.4996 0.5124 29 1 6.1186 0.4652 -1.5268 30 1 4.6548 1.1979 -2.2259 31 1 6.1950 1.2644 -3.1155 32 1 6.5540 3.4761 -3.6525 33 1 3.8027 4.6367 0.0088 34 1 -0.5447 4.0563 -0.8878 35 1 -0.5434 4.0558 0.8922 36 1 -0.7009 5.5894 0.0032 37 1 0.2127 2.3189 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = -89.566266 kcal Electronic energy + Delta-G solvation = -18262.162777 eV Core-core repulsion = 15389.850221 eV Total energy + Delta-G solvation = -2872.312556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59074 -39.80255 -38.64456 -36.47151 -33.65728 -31.34605 -30.99862 -28.98225 -27.61947 -27.32681 -26.41164 -23.46973 -22.74570 -21.39462 -19.19946 -18.72512 -17.97176 -17.05864 -16.99393 -16.92940 -16.41356 -15.89789 -15.65506 -15.62237 -14.87780 -14.54661 -14.14514 -13.70355 -13.47806 -13.25674 -13.09671 -12.78695 -12.60539 -12.53491 -12.46737 -12.17092 -12.16296 -11.93789 -11.89587 -11.57459 -11.14009 -10.56381 -10.36947 -9.53435 -9.02197 -8.56552 -6.27188 0.29704 0.43596 1.55834 1.63805 1.82695 2.24484 2.32729 2.61264 2.69644 3.24445 3.75896 3.92332 4.06370 4.22088 4.26216 4.31096 4.33620 4.36221 4.41499 4.50896 4.53827 4.66394 4.68841 4.72464 4.81367 4.97830 5.09043 5.11479 5.17595 5.20972 5.49841 5.57968 5.62799 5.80707 6.14628 6.18924 6.28620 6.50483 6.68269 7.53337 8.82393 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.005286 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.465284 B = 5296.161864 C = 5905.729360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.163 3.837 4 C -0.198 4.198 5 C 0.005 3.995 6 C -0.060 4.060 7 C 0.029 3.971 8 H 0.001 0.999 9 C -0.121 4.121 10 C -0.604 4.604 11 H 0.049 0.951 12 C -0.033 4.033 13 N -0.941 5.941 14 Si 1.111 2.889 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.271 1.271 18 C -0.211 4.211 19 C 0.163 3.837 20 O -0.334 6.334 21 C 0.016 3.984 22 C -0.300 4.300 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.257 0.743 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -3.789 8.845 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.117 3.883 4 C -0.217 4.217 5 C 0.004 3.996 6 C -0.097 4.097 7 C 0.011 3.989 8 H 0.019 0.981 9 C -0.179 4.179 10 C -0.642 4.642 11 H 0.068 0.932 12 C -0.230 4.230 13 N -0.579 5.579 14 Si 0.934 3.066 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.196 1.196 18 C -0.230 4.230 19 C 0.117 3.883 20 O -0.247 6.247 21 C -0.078 4.078 22 C -0.319 4.319 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.141 0.859 26 H 0.146 0.854 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.390 -3.033 8.038 18.505 hybrid contribution -1.544 -0.681 0.497 1.760 sum -17.935 -3.714 8.535 20.206 Atomic orbital electron populations 1.23403 0.76265 1.05863 1.02317 1.86079 1.23738 1.26206 1.88298 1.18721 0.91639 0.84406 0.93533 1.20261 0.91909 0.97942 1.11609 1.19652 0.96011 0.91657 0.92235 1.20617 0.88835 1.01800 0.98461 1.18789 0.95073 0.93424 0.91661 0.98061 1.21786 0.97977 0.99086 0.99005 1.22322 0.93276 1.41626 1.06937 0.93233 1.27226 1.09853 0.93856 0.92085 1.70887 1.11135 1.46348 1.29496 0.83016 0.70123 0.77240 0.76269 1.19568 1.21289 1.19583 1.20295 0.91385 0.98937 1.12339 1.18708 0.90601 0.85404 0.93601 1.86079 1.21376 1.28943 1.88322 1.23407 0.76287 1.05738 1.02383 1.21332 1.01502 0.90768 1.18292 0.91334 0.91858 0.85876 0.85399 0.91174 0.92102 0.93464 0.94458 0.96393 0.93250 0.86465 0.91776 0.91196 0.85988 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.77 10.50 -92.49 -0.97 -9.74 16 3 C 0.16 5.03 6.68 22.49 0.15 5.18 16 4 C -0.20 -7.08 8.06 22.38 0.18 -6.90 16 5 C 0.00 0.19 4.72 -19.90 -0.09 0.09 16 6 C -0.06 -2.60 4.82 29.85 0.14 -2.45 16 7 C 0.03 1.52 1.93 -11.54 -0.02 1.50 16 8 H 0.00 0.07 6.96 -2.39 -0.02 0.05 16 9 C -0.12 -5.80 8.42 71.98 0.61 -5.20 16 10 C -0.60 -34.35 8.30 25.60 0.21 -34.13 16 11 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 12 C -0.03 -1.90 5.45 84.65 0.46 -1.44 16 13 N -0.94 -59.10 13.55 21.44 0.29 -58.81 16 14 Si 1.11 51.04 29.91 68.60 2.05 53.09 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 C -0.21 -8.00 9.63 22.38 0.22 -7.78 16 19 C 0.16 5.25 6.68 22.49 0.15 5.40 16 20 O -0.33 -9.52 10.50 -92.31 -0.97 -10.49 16 21 C 0.02 0.26 9.81 113.37 1.11 1.37 16 22 C -0.30 -8.26 8.02 22.46 0.18 -8.08 16 23 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 24 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 25 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.13 4.49 8.03 -2.91 -0.02 4.46 16 27 H 0.07 2.88 8.08 -2.39 -0.02 2.86 16 28 H 0.06 2.67 8.08 -2.39 -0.02 2.65 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.64 6.69 -2.38 -0.02 1.62 16 31 H 0.02 0.90 7.84 -2.39 -0.02 0.88 16 32 H 0.26 16.42 6.50 -92.71 -0.60 15.82 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 35 H 0.07 0.91 7.66 -2.39 -0.02 0.90 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.16 3.17 4.54 -2.91 -0.01 3.16 16 Total: -1.00 -70.30 305.78 6.03 -64.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.21 Total: 12.76 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 4.41 Total: -51.09 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.29 Total: -58.81 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.94 Total: -20.23 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -70.30 6.03 -64.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.287 kcal (2) G-P(sol) polarization free energy of solvation -70.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds