Wall clock time and date at job start Mon Mar 30 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.46863 * 2 1 4 4 C 1.50695 * 109.47501 * 120.00241 * 2 1 3 5 5 C 1.34773 * 125.76102 * 120.00377 * 4 2 1 6 6 C 1.40646 * 106.63859 * 180.02562 * 5 4 2 7 7 C 1.34894 * 107.16096 * 0.05386 * 6 5 4 8 8 O 1.33828 * 108.29983 * 359.91708 * 7 6 5 9 9 C 1.50930 * 123.89805 * 179.82256 * 7 6 5 10 10 C 1.53329 * 108.43501 * 343.31862 * 9 7 6 11 11 C 1.53127 * 109.54013 * 50.02398 * 10 9 7 12 12 C 1.50643 * 128.27810 * 180.02562 * 6 5 4 13 13 O 1.42902 * 109.68087 * 283.34990 * 12 6 5 14 14 C 1.50692 * 109.71337 * 43.88541 * 12 6 5 15 15 H 1.08003 * 120.00063 * 4.06260 * 14 12 6 16 16 C 1.37878 * 119.99977 * 184.05679 * 14 12 6 17 17 N 1.31511 * 120.00076 * 6.51885 * 16 14 12 18 18 Si 1.86805 * 120.00062 * 186.52241 * 16 14 12 19 19 H 1.48494 * 109.47408 * 59.99943 * 18 16 14 20 20 H 1.48504 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46794 * 299.99709 * 18 16 14 22 22 H 1.08997 * 109.47732 * 60.00115 * 1 2 3 23 23 H 1.09008 * 109.46965 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 299.99486 * 1 2 3 25 25 H 1.09000 * 109.47312 * 240.00513 * 2 1 3 26 26 H 1.09008 * 109.47012 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47430 * 299.99930 * 3 2 1 28 28 H 1.08997 * 109.47374 * 60.00547 * 3 2 1 29 29 H 1.08001 * 126.67712 * 0.04276 * 5 4 2 30 30 H 1.08994 * 109.67261 * 103.03098 * 9 7 6 31 31 H 1.08999 * 109.67262 * 223.52672 * 9 7 6 32 32 H 1.08998 * 109.45039 * 290.00937 * 10 9 7 33 33 H 1.09000 * 109.46746 * 170.05389 * 10 9 7 34 34 H 1.09008 * 109.47810 * 170.03418 * 11 10 9 35 35 H 1.08995 * 109.48040 * 49.99943 * 11 10 9 36 36 H 0.96695 * 113.99973 * 61.07514 * 13 12 6 37 37 H 0.97002 * 120.00122 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8105 -1.8107 1.2420 6 6 3.0358 -2.1304 2.5929 7 6 2.3836 -1.2109 3.3337 8 8 1.7791 -0.3536 2.5025 9 6 2.3705 -1.2010 4.8429 10 6 2.8288 -2.5769 5.3407 11 6 4.1312 -2.9685 4.6369 12 6 3.8418 -3.2695 3.1605 13 8 3.0985 -4.4853 3.0532 14 6 5.1394 -3.3998 2.4055 15 1 5.3910 -2.6843 1.6366 16 6 6.0055 -4.4324 2.6963 17 7 5.6452 -5.3753 3.5392 18 14 7.6910 -4.4921 1.8930 19 1 8.4549 -3.2708 2.2538 20 1 8.4237 -5.6932 2.3683 21 1 7.5341 -4.5601 0.4179 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1878 -2.3431 0.3813 30 1 3.0507 -0.4329 5.2107 31 1 1.3607 -0.9984 5.1998 32 1 2.0600 -3.3174 5.1200 33 1 2.9956 -2.5367 6.4171 34 1 4.5493 -3.8554 5.1133 35 1 4.8440 -2.1471 4.7081 36 1 2.8815 -4.7348 2.1446 37 1 6.2544 -6.1020 3.7436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260716685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:19 Heat of formation + Delta-G solvation = -55.600880 kcal Electronic energy + Delta-G solvation = -19112.903059 eV Core-core repulsion = 16242.063352 eV Total energy + Delta-G solvation = -2870.839706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97295 -37.12365 -35.30748 -33.68634 -32.10591 -31.73038 -28.45793 -27.61999 -27.10138 -24.99251 -22.44380 -21.57647 -20.59930 -19.98944 -17.75202 -16.77974 -16.05798 -15.44367 -14.80467 -14.53391 -14.49102 -13.88538 -13.59158 -12.99045 -12.92924 -12.70397 -12.40568 -12.15722 -11.98161 -11.75576 -11.37078 -11.18245 -11.12285 -10.95557 -10.92496 -10.80238 -10.46652 -10.11110 -10.08633 -9.82450 -8.94484 -8.72326 -8.52729 -8.09553 -7.38203 -5.94944 -4.12238 2.42735 3.29689 3.35454 3.37750 3.50089 3.51423 4.42008 4.87464 5.02196 5.22020 5.27964 5.46530 5.57476 5.64449 5.71405 5.76181 5.85978 5.86292 5.95089 6.02885 6.07625 6.18594 6.28815 6.32062 6.43294 6.49951 6.57261 6.75285 6.89754 6.93507 7.25699 7.37623 7.58784 7.80725 7.90723 8.02985 8.29780 8.86691 9.43228 9.64217 11.05572 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.007775 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.545552 B = 3600.642958 C = 4317.158883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 C -0.146 4.146 4 C -0.043 4.043 5 C -0.176 4.176 6 C -0.157 4.157 7 C -0.041 4.041 8 O -0.178 6.178 9 C -0.026 4.026 10 C -0.117 4.117 11 C -0.091 4.091 12 C 0.315 3.685 13 O -0.549 6.549 14 C -0.555 4.555 15 H 0.056 0.944 16 C 0.081 3.919 17 N -0.853 5.853 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.349 0.651 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 9.004 -3.059 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.093 4.093 5 C -0.195 4.195 6 C -0.159 4.159 7 C -0.090 4.090 8 O -0.076 6.076 9 C -0.063 4.063 10 C -0.155 4.155 11 C -0.129 4.129 12 C 0.275 3.725 13 O -0.352 6.352 14 C -0.593 4.593 15 H 0.074 0.926 16 C -0.125 4.125 17 N -0.488 5.488 18 Si 0.711 3.289 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.192 0.808 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.491 9.086 -2.192 11.978 hybrid contribution 1.143 -0.123 -1.215 1.673 sum -6.347 8.963 -3.408 11.499 Atomic orbital electron populations 1.21847 0.94409 1.02241 1.01808 1.19592 0.95736 0.95513 0.91608 1.21850 1.01574 0.95140 1.01793 1.22160 1.04575 0.99047 0.83502 1.21300 1.02021 0.97979 0.98203 1.21581 1.01139 1.00776 0.92379 1.22353 1.00729 0.92939 0.92997 1.83688 1.60355 1.48136 1.15452 1.20125 1.01211 0.99624 0.85326 1.21682 1.00523 0.94462 0.98824 1.21494 0.94123 1.01258 0.96026 1.17120 0.86635 0.77439 0.91280 1.86478 1.76219 1.42776 1.29707 1.21480 1.03757 1.12574 1.21518 0.92601 1.25000 0.97653 0.95091 0.94740 1.70107 1.34845 1.10613 1.33279 0.86814 0.84791 0.77413 0.79842 1.20225 1.21236 1.20285 0.92325 0.92313 0.92389 0.88840 0.92272 0.92329 0.92378 0.84176 0.90851 0.91439 0.91358 0.92291 0.89642 0.92881 0.80767 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.17 37.15 0.34 -1.39 16 2 C -0.01 -0.08 3.32 -91.78 -0.31 -0.39 16 3 C -0.15 -1.77 9.18 37.16 0.34 -1.43 16 4 C -0.04 -0.79 5.84 -35.54 -0.21 -1.00 16 5 C -0.18 -3.65 10.16 -39.90 -0.41 -4.05 16 6 C -0.16 -3.59 5.04 -104.93 -0.53 -4.12 16 7 C -0.04 -0.85 7.22 -35.38 -0.26 -1.11 16 8 O -0.18 -3.51 10.65 6.35 0.07 -3.44 16 9 C -0.03 -0.46 6.30 -27.60 -0.17 -0.63 16 10 C -0.12 -2.28 5.88 -26.50 -0.16 -2.44 16 11 C -0.09 -2.16 4.63 -26.44 -0.12 -2.29 16 12 C 0.31 7.93 0.66 -92.73 -0.06 7.86 16 13 O -0.55 -14.29 11.59 -35.23 -0.41 -14.70 16 14 C -0.56 -15.16 7.96 -34.44 -0.27 -15.43 16 15 H 0.06 1.54 7.49 -52.48 -0.39 1.15 16 16 C 0.08 2.22 5.24 -17.82 -0.09 2.12 16 17 N -0.85 -24.19 11.35 55.43 0.63 -23.56 16 18 Si 0.88 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 26 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.14 2.80 8.06 -52.49 -0.42 2.37 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.41 7.79 -51.93 -0.40 1.01 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 2.23 7.06 -51.92 -0.37 1.86 16 35 H 0.05 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.35 8.40 9.04 45.56 0.41 8.81 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -30.13 302.28 -7.04 -37.16 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.96 Total: 8.23 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -1.90 Total: -24.29 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.34 Total: -18.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.13 -7.04 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.438 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds