Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.46863 * 2 1 4 4 C 1.50695 * 109.47501 * 120.00241 * 2 1 3 5 5 C 1.34773 * 125.76102 * 120.00377 * 4 2 1 6 6 C 1.40646 * 106.63859 * 180.02562 * 5 4 2 7 7 C 1.34894 * 107.16096 * 0.05386 * 6 5 4 8 8 O 1.33828 * 108.29983 * 359.91708 * 7 6 5 9 9 C 1.50930 * 123.89805 * 179.82256 * 7 6 5 10 10 C 1.53329 * 108.43501 * 343.31862 * 9 7 6 11 11 C 1.53127 * 109.54013 * 50.02398 * 10 9 7 12 12 C 1.50643 * 128.27810 * 180.02562 * 6 5 4 13 13 O 1.42902 * 109.68087 * 283.34990 * 12 6 5 14 14 C 1.50692 * 109.71337 * 43.88541 * 12 6 5 15 15 H 1.08003 * 120.00063 * 4.06260 * 14 12 6 16 16 C 1.37878 * 119.99977 * 184.05679 * 14 12 6 17 17 N 1.31511 * 120.00076 * 6.51885 * 16 14 12 18 18 Si 1.86805 * 120.00062 * 186.52241 * 16 14 12 19 19 H 1.48494 * 109.47408 * 59.99943 * 18 16 14 20 20 H 1.48504 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46794 * 299.99709 * 18 16 14 22 22 H 1.08997 * 109.47732 * 60.00115 * 1 2 3 23 23 H 1.09008 * 109.46965 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 299.99486 * 1 2 3 25 25 H 1.09000 * 109.47312 * 240.00513 * 2 1 3 26 26 H 1.09008 * 109.47012 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47430 * 299.99930 * 3 2 1 28 28 H 1.08997 * 109.47374 * 60.00547 * 3 2 1 29 29 H 1.08001 * 126.67712 * 0.04276 * 5 4 2 30 30 H 1.08994 * 109.67261 * 103.03098 * 9 7 6 31 31 H 1.08999 * 109.67262 * 223.52672 * 9 7 6 32 32 H 1.08998 * 109.45039 * 290.00937 * 10 9 7 33 33 H 1.09000 * 109.46746 * 170.05389 * 10 9 7 34 34 H 1.09008 * 109.47810 * 170.03418 * 11 10 9 35 35 H 1.08995 * 109.48040 * 49.99943 * 11 10 9 36 36 H 0.96695 * 113.99973 * 61.07514 * 13 12 6 37 37 H 0.97002 * 120.00122 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8105 -1.8107 1.2420 6 6 3.0358 -2.1304 2.5929 7 6 2.3836 -1.2109 3.3337 8 8 1.7791 -0.3536 2.5025 9 6 2.3705 -1.2010 4.8429 10 6 2.8288 -2.5769 5.3407 11 6 4.1312 -2.9685 4.6369 12 6 3.8418 -3.2695 3.1605 13 8 3.0985 -4.4853 3.0532 14 6 5.1394 -3.3998 2.4055 15 1 5.3910 -2.6843 1.6366 16 6 6.0055 -4.4324 2.6963 17 7 5.6452 -5.3753 3.5392 18 14 7.6910 -4.4921 1.8930 19 1 8.4549 -3.2708 2.2538 20 1 8.4237 -5.6932 2.3683 21 1 7.5341 -4.5601 0.4179 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1878 -2.3431 0.3813 30 1 3.0507 -0.4329 5.2107 31 1 1.3607 -0.9984 5.1998 32 1 2.0600 -3.3174 5.1200 33 1 2.9956 -2.5367 6.4171 34 1 4.5493 -3.8554 5.1133 35 1 4.8440 -2.1471 4.7081 36 1 2.8815 -4.7348 2.1446 37 1 6.2544 -6.1020 3.7436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260716685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = -74.208886 kcal Electronic energy + Delta-G solvation = -19113.709962 eV Core-core repulsion = 16242.063352 eV Total energy + Delta-G solvation = -2871.646610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.53640 -38.91707 -36.50602 -35.38957 -34.21130 -33.33484 -30.25192 -29.22299 -28.02964 -26.89625 -23.91771 -23.25133 -22.21015 -21.41969 -19.52490 -18.76767 -17.52471 -16.99085 -16.61210 -16.23968 -15.98575 -15.31235 -14.98880 -14.77696 -14.52861 -14.00312 -13.82890 -13.53516 -13.45110 -13.20977 -13.08842 -12.99297 -12.84725 -12.40167 -12.12769 -12.11128 -12.09596 -11.83511 -11.78692 -11.58245 -10.83374 -10.58497 -10.40703 -10.11366 -8.93321 -8.04273 -6.28402 0.90330 1.38240 1.39776 1.47351 1.84273 2.04168 2.41381 3.16536 3.63943 3.93702 4.03088 4.19564 4.20242 4.21826 4.25689 4.35357 4.53574 4.65866 4.76508 4.78872 4.85181 4.94026 4.94611 4.96578 5.02954 5.13642 5.22670 5.33321 5.35169 5.42392 5.51348 5.60182 5.72970 5.81982 5.98484 6.22599 6.43280 6.76021 7.36175 7.59061 8.94901 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.007775 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.545552 B = 3600.642958 C = 4317.158883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.010 4.010 3 C -0.142 4.142 4 C -0.022 4.022 5 C -0.209 4.209 6 C -0.192 4.192 7 C -0.046 4.046 8 O -0.176 6.176 9 C -0.022 4.022 10 C -0.108 4.108 11 C -0.090 4.090 12 C 0.306 3.694 13 O -0.563 6.563 14 C -0.570 4.570 15 H 0.044 0.956 16 C 0.038 3.962 17 N -0.881 5.881 18 Si 0.944 3.056 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.273 1.273 22 H 0.090 0.910 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.137 0.863 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.350 0.650 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 10.944 -3.613 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.072 4.072 5 C -0.229 4.229 6 C -0.193 4.193 7 C -0.096 4.096 8 O -0.073 6.073 9 C -0.059 4.059 10 C -0.145 4.145 11 C -0.128 4.128 12 C 0.267 3.733 13 O -0.366 6.366 14 C -0.608 4.608 15 H 0.062 0.938 16 C -0.166 4.166 17 N -0.517 5.517 18 Si 0.770 3.230 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.198 1.198 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.124 0.876 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.154 0.846 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.194 0.806 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.336 11.037 -2.751 14.102 hybrid contribution 1.378 -0.712 -1.099 1.901 sum -6.958 10.325 -3.850 13.032 Atomic orbital electron populations 1.21822 0.92618 1.02201 1.03174 1.19896 0.97179 0.96204 0.89547 1.21832 1.00877 0.94022 1.03210 1.22960 1.02199 0.97765 0.84256 1.21380 1.04171 0.99780 0.97523 1.21483 1.02712 1.01284 0.93862 1.22798 0.99998 0.92384 0.94396 1.83721 1.59986 1.47721 1.15917 1.20237 1.03558 0.98805 0.83315 1.21572 0.97486 0.95172 1.00280 1.21384 0.96216 0.99590 0.95612 1.17171 0.86170 0.77905 0.92070 1.86443 1.76366 1.43838 1.29985 1.21736 1.05153 1.12348 1.21527 0.93821 1.25667 1.00855 0.94744 0.95311 1.70229 1.35915 1.11067 1.34460 0.85860 0.80677 0.77466 0.79036 1.19938 1.20654 1.19818 0.89144 0.93089 0.92859 0.87564 0.93378 0.89094 0.92813 0.84551 0.88827 0.88192 0.92926 0.89104 0.92818 0.93513 0.80571 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.17 71.98 0.66 -2.25 16 2 C -0.01 -0.25 3.32 -11.54 -0.04 -0.29 16 3 C -0.14 -3.03 9.18 71.98 0.66 -2.37 16 4 C -0.02 -0.78 5.84 24.89 0.15 -0.64 16 5 C -0.21 -8.80 10.16 22.06 0.22 -8.57 16 6 C -0.19 -8.90 5.04 -20.06 -0.10 -9.00 16 7 C -0.05 -1.88 7.22 24.99 0.18 -1.70 16 8 O -0.18 -6.65 10.65 -0.19 0.00 -6.65 16 9 C -0.02 -0.75 6.30 30.03 0.19 -0.56 16 10 C -0.11 -4.09 5.88 30.75 0.18 -3.91 16 11 C -0.09 -4.36 4.63 30.78 0.14 -4.21 16 12 C 0.31 15.86 0.66 -12.16 -0.01 15.86 16 13 O -0.56 -30.44 11.59 -148.98 -1.73 -32.17 16 14 C -0.57 -32.05 7.96 25.60 0.20 -31.85 16 15 H 0.04 2.49 7.49 -2.91 -0.02 2.47 16 16 C 0.04 2.10 5.24 84.66 0.44 2.54 16 17 N -0.88 -51.26 11.35 21.45 0.24 -51.01 16 18 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 26 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.14 5.64 8.06 -2.91 -0.02 5.62 16 30 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16 33 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.05 2.89 7.06 -2.38 -0.02 2.88 16 35 H 0.05 2.24 8.08 -2.39 -0.02 2.22 16 36 H 0.35 17.78 9.04 -74.06 -0.67 17.11 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -66.32 302.28 3.81 -62.51 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.39 Total: 28.33 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 2.88 Total: -46.95 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.24 Total: -51.01 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.73 Total: -38.83 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.32 3.81 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.702 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds