Wall clock time and date at job start Mon Mar 30 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35900 * 117.00245 * 2 1 4 4 C 1.38767 * 120.02440 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.05688 * 179.72455 * 4 3 2 6 6 C 1.38181 * 120.10660 * 0.28042 * 5 4 3 7 7 C 1.38774 * 120.05460 * 359.97438 * 6 5 4 8 8 O 1.35892 * 120.02795 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00038 * 359.97438 * 8 7 6 10 10 C 1.38631 * 120.02928 * 180.27968 * 3 2 1 11 11 C 1.50705 * 120.05738 * 359.97438 * 10 3 2 12 12 C 1.53002 * 109.47169 * 270.28175 * 11 10 3 13 13 H 1.09003 * 109.47383 * 54.99462 * 12 11 10 14 14 C 1.52999 * 109.47170 * 294.99970 * 12 11 10 15 15 C 1.50695 * 109.47425 * 174.99885 * 12 11 10 16 16 H 1.08006 * 119.99443 * 5.45935 * 15 12 11 17 17 C 1.37871 * 120.00393 * 185.46417 * 15 12 11 18 18 N 1.31515 * 120.00223 * 9.56187 * 17 15 12 19 19 Si 1.86804 * 120.00372 * 189.56977 * 17 15 12 20 20 H 1.48500 * 109.47201 * 84.98815 * 19 17 15 21 21 H 1.48495 * 109.47387 * 204.99337 * 19 17 15 22 22 H 1.48504 * 109.46731 * 324.98964 * 19 17 15 23 23 H 1.09001 * 109.47104 * 60.00169 * 1 2 3 24 24 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47191 * 299.99925 * 1 2 3 26 26 H 1.08002 * 119.97386 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.95091 * 180.25610 * 5 4 3 28 28 H 1.07998 * 119.97678 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47291 * 60.00331 * 9 8 7 30 30 H 1.09004 * 109.47393 * 180.02562 * 9 8 7 31 31 H 1.09006 * 109.47371 * 300.00137 * 9 8 7 32 32 H 1.09001 * 109.46654 * 30.27964 * 11 10 3 33 33 H 1.09000 * 109.47145 * 150.28086 * 11 10 3 34 34 H 1.09007 * 109.47065 * 304.82904 * 14 12 11 35 35 H 1.08998 * 109.47557 * 64.82134 * 14 12 11 36 36 H 1.08991 * 109.47656 * 184.82621 * 14 12 11 37 37 H 0.97002 * 120.00551 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2907 2.3750 -0.0005 5 6 1.9173 3.6065 0.0052 6 6 3.2971 3.6821 0.0057 7 6 4.0568 2.5208 0.0009 8 8 5.4136 2.5958 0.0018 9 6 5.9911 3.9029 0.0073 10 6 3.4303 1.2841 -0.0059 11 6 4.2529 0.0214 -0.0117 12 6 4.5316 -0.4124 1.4289 13 1 3.5892 -0.5101 1.9678 14 6 5.4062 0.6373 2.1174 15 6 5.2477 -1.7384 1.4247 16 1 5.5590 -2.1809 0.4900 17 6 5.5052 -2.3866 2.6140 18 7 4.9668 -1.9492 3.7313 19 14 6.6190 -3.8861 2.6384 20 1 8.0351 -3.4493 2.7340 21 1 6.2822 -4.7338 3.8101 22 1 6.4250 -4.6671 1.3903 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2122 2.3185 -0.0005 27 1 1.3279 4.5114 0.0090 28 1 3.7847 4.6457 0.0106 29 1 5.6676 4.4393 0.8993 30 1 7.0780 3.8200 0.0071 31 1 5.6684 4.4465 -0.8807 32 1 3.7054 -0.7665 -0.5289 33 1 5.1968 0.2050 -0.5249 34 1 6.3113 0.7972 1.5314 35 1 4.8548 1.5742 2.1971 36 1 5.6758 0.2885 3.1142 37 1 5.1483 -2.4050 4.5681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:04 Heat of formation + Delta-G solvation = -59.312261 kcal Electronic energy + Delta-G solvation = -18884.237946 eV Core-core repulsion = 16013.237303 eV Total energy + Delta-G solvation = -2871.000644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21979 -38.58441 -36.03728 -34.83554 -32.05174 -29.68494 -29.16156 -27.52529 -26.57648 -25.35943 -24.75174 -21.55098 -21.36153 -19.22855 -18.01952 -16.44525 -16.12812 -15.93196 -15.55866 -15.16852 -15.14796 -14.45150 -14.37590 -13.16637 -13.03789 -12.77476 -12.51289 -12.21568 -11.98641 -11.70131 -11.33577 -11.26972 -11.13324 -10.91372 -10.73813 -10.49431 -10.40833 -10.26000 -9.94847 -9.40445 -9.26199 -8.63067 -8.12998 -7.76834 -7.60478 -5.84099 -3.84365 1.78003 1.81148 3.33024 3.41246 3.46793 3.50083 4.05439 4.13433 4.58432 5.02826 5.23117 5.29624 5.33044 5.35514 5.36309 5.39273 5.48780 5.60556 5.67142 5.70095 5.85188 6.35205 6.38859 6.52859 6.72122 6.81223 6.87872 7.00586 7.08802 7.27665 7.49757 7.61553 7.76291 7.86008 7.92454 8.24204 8.25491 8.66065 9.19864 9.77093 11.25134 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.007558 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.562741 B = 3703.567507 C = 4674.001318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.298 6.298 3 C 0.160 3.840 4 C -0.247 4.247 5 C -0.062 4.062 6 C -0.248 4.248 7 C 0.164 3.836 8 O -0.296 6.296 9 C 0.028 3.972 10 C -0.120 4.120 11 C -0.057 4.057 12 C 0.053 3.947 13 H 0.031 0.969 14 C -0.119 4.119 15 C -0.507 4.507 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.884 3.116 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.275 1.275 23 H 0.049 0.951 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.007 0.993 36 H 0.054 0.946 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 11.602 -7.649 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.211 6.211 3 C 0.114 3.886 4 C -0.266 4.266 5 C -0.080 4.080 6 C -0.267 4.267 7 C 0.118 3.882 8 O -0.208 6.208 9 C -0.067 4.067 10 C -0.121 4.121 11 C -0.094 4.094 12 C 0.034 3.966 13 H 0.049 0.951 14 C -0.176 4.176 15 C -0.546 4.546 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.712 3.288 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.200 1.200 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.841 11.202 -7.455 14.669 hybrid contribution 0.275 -0.266 0.225 0.444 sum -5.566 10.937 -7.230 14.243 Atomic orbital electron populations 1.23007 0.79209 1.03663 1.00710 1.86204 1.20447 1.26350 1.88078 1.18476 0.91161 0.84120 0.94823 1.21023 0.99555 0.92337 1.13637 1.20477 0.93640 0.96650 0.97280 1.21024 0.94811 0.97084 1.13744 1.18407 0.82505 0.92671 0.94621 1.86237 1.17144 1.29374 1.88068 1.22996 0.99137 0.83861 1.00713 1.18852 0.90778 0.95221 1.07287 1.20532 0.96692 0.90853 1.01324 1.18590 0.96023 0.93267 0.88674 0.95124 1.21670 0.98525 0.96099 1.01347 1.21187 1.36643 1.04340 0.92405 0.92857 1.24936 0.96001 0.97061 0.95896 1.69993 1.43082 1.41251 0.98593 0.86743 0.81539 0.83158 0.77343 1.20744 1.21518 1.20048 0.93223 0.88426 0.92904 0.85965 0.86313 0.86002 0.92960 0.88534 0.93249 0.92117 0.92273 0.95230 0.97371 0.92680 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.61 9.54 -19.43 -0.19 -5.79 16 3 C 0.16 3.03 6.66 -39.24 -0.26 2.76 16 4 C -0.25 -3.83 9.04 -39.41 -0.36 -4.19 16 5 C -0.06 -0.89 10.04 -39.63 -0.40 -1.29 16 6 C -0.25 -3.80 9.04 -39.40 -0.36 -4.16 16 7 C 0.16 3.02 5.48 -39.24 -0.21 2.81 16 8 O -0.30 -5.30 7.70 -19.40 -0.15 -5.45 16 9 C 0.03 0.35 9.81 101.05 0.99 1.34 16 10 C -0.12 -2.48 4.74 -104.33 -0.49 -2.98 16 11 C -0.06 -1.33 4.37 -27.88 -0.12 -1.45 16 12 C 0.05 1.43 2.15 -91.77 -0.20 1.23 16 13 H 0.03 0.92 8.09 -51.93 -0.42 0.50 16 14 C -0.12 -3.07 7.71 37.16 0.29 -2.78 16 15 C -0.51 -14.79 8.48 -34.44 -0.29 -15.08 16 16 H 0.05 1.53 7.77 -52.48 -0.41 1.12 16 17 C 0.06 1.80 5.16 -17.82 -0.09 1.71 16 18 N -0.89 -26.99 12.17 55.43 0.67 -26.32 16 19 Si 0.88 22.20 29.55 -169.99 -5.02 17.17 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 26 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.12 1.52 6.29 -52.49 -0.33 1.19 16 29 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.06 1.43 7.54 -51.93 -0.39 1.04 16 33 H 0.06 1.37 7.53 -51.93 -0.39 0.98 16 34 H 0.03 0.73 7.69 -51.93 -0.40 0.33 16 35 H 0.01 0.18 6.40 -51.93 -0.33 -0.15 16 36 H 0.05 1.55 6.81 -51.93 -0.35 1.20 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -32.98 300.45 -6.02 -39.00 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.35 Total: -2.44 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.51 Total: -20.69 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.67 Total: -26.32 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.33 Total: -11.24 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.98 -6.02 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.315 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds