Wall clock time and date at job start Mon Mar 30 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35900 * 117.00245 * 2 1 4 4 C 1.38767 * 120.02440 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.05688 * 179.72455 * 4 3 2 6 6 C 1.38181 * 120.10660 * 0.28042 * 5 4 3 7 7 C 1.38774 * 120.05460 * 359.97438 * 6 5 4 8 8 O 1.35892 * 120.02795 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00038 * 359.97438 * 8 7 6 10 10 C 1.38631 * 120.02928 * 180.27968 * 3 2 1 11 11 C 1.50705 * 120.05738 * 359.97438 * 10 3 2 12 12 C 1.53002 * 109.47169 * 270.28175 * 11 10 3 13 13 H 1.09003 * 109.47383 * 54.99462 * 12 11 10 14 14 C 1.52999 * 109.47170 * 294.99970 * 12 11 10 15 15 C 1.50695 * 109.47425 * 174.99885 * 12 11 10 16 16 H 1.08006 * 119.99443 * 5.45935 * 15 12 11 17 17 C 1.37871 * 120.00393 * 185.46417 * 15 12 11 18 18 N 1.31515 * 120.00223 * 9.56187 * 17 15 12 19 19 Si 1.86804 * 120.00372 * 189.56977 * 17 15 12 20 20 H 1.48500 * 109.47201 * 84.98815 * 19 17 15 21 21 H 1.48495 * 109.47387 * 204.99337 * 19 17 15 22 22 H 1.48504 * 109.46731 * 324.98964 * 19 17 15 23 23 H 1.09001 * 109.47104 * 60.00169 * 1 2 3 24 24 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47191 * 299.99925 * 1 2 3 26 26 H 1.08002 * 119.97386 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.95091 * 180.25610 * 5 4 3 28 28 H 1.07998 * 119.97678 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47291 * 60.00331 * 9 8 7 30 30 H 1.09004 * 109.47393 * 180.02562 * 9 8 7 31 31 H 1.09006 * 109.47371 * 300.00137 * 9 8 7 32 32 H 1.09001 * 109.46654 * 30.27964 * 11 10 3 33 33 H 1.09000 * 109.47145 * 150.28086 * 11 10 3 34 34 H 1.09007 * 109.47065 * 304.82904 * 14 12 11 35 35 H 1.08998 * 109.47557 * 64.82134 * 14 12 11 36 36 H 1.08991 * 109.47656 * 184.82621 * 14 12 11 37 37 H 0.97002 * 120.00551 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2907 2.3750 -0.0005 5 6 1.9173 3.6065 0.0052 6 6 3.2971 3.6821 0.0057 7 6 4.0568 2.5208 0.0009 8 8 5.4136 2.5958 0.0018 9 6 5.9911 3.9029 0.0073 10 6 3.4303 1.2841 -0.0059 11 6 4.2529 0.0214 -0.0117 12 6 4.5316 -0.4124 1.4289 13 1 3.5892 -0.5101 1.9678 14 6 5.4062 0.6373 2.1174 15 6 5.2477 -1.7384 1.4247 16 1 5.5590 -2.1809 0.4900 17 6 5.5052 -2.3866 2.6140 18 7 4.9668 -1.9492 3.7313 19 14 6.6190 -3.8861 2.6384 20 1 8.0351 -3.4493 2.7340 21 1 6.2822 -4.7338 3.8101 22 1 6.4250 -4.6671 1.3903 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2122 2.3185 -0.0005 27 1 1.3279 4.5114 0.0090 28 1 3.7847 4.6457 0.0106 29 1 5.6676 4.4393 0.8993 30 1 7.0780 3.8200 0.0071 31 1 5.6684 4.4465 -0.8807 32 1 3.7054 -0.7665 -0.5289 33 1 5.1968 0.2050 -0.5249 34 1 6.3113 0.7972 1.5314 35 1 4.8548 1.5742 2.1971 36 1 5.6758 0.2885 3.1142 37 1 5.1483 -2.4050 4.5681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:04 Heat of formation + Delta-G solvation = -79.887434 kcal Electronic energy + Delta-G solvation = -18885.130153 eV Core-core repulsion = 16013.237303 eV Total energy + Delta-G solvation = -2871.892850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50563 -39.83271 -37.34994 -36.72961 -33.99951 -31.41936 -30.37100 -28.58472 -27.80610 -27.23059 -26.71410 -23.07434 -22.59042 -21.10875 -19.28941 -18.35264 -17.67569 -17.15521 -16.88527 -16.52186 -16.36042 -16.29905 -15.59790 -14.91953 -14.74500 -14.22543 -13.91661 -13.66747 -13.39450 -13.18880 -12.99648 -12.74184 -12.71098 -12.49906 -12.31195 -12.23424 -12.16089 -11.61677 -11.52330 -11.45128 -11.24914 -10.77666 -10.39712 -9.06121 -8.98159 -8.08660 -6.17931 0.50447 0.55832 1.40245 1.42300 1.51831 2.17587 2.45483 2.86503 2.91301 3.20445 3.90858 4.11093 4.16762 4.22207 4.38330 4.43720 4.47965 4.51217 4.60208 4.73178 4.74145 4.78065 4.82130 4.88089 5.04461 5.23705 5.32361 5.39297 5.42801 5.51407 5.59476 5.64070 5.71707 6.03643 6.10064 6.42290 6.56687 6.63749 6.93977 7.47754 9.00043 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.007558 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.562741 B = 3703.567507 C = 4674.001318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.144 3.856 4 C -0.247 4.247 5 C -0.049 4.049 6 C -0.247 4.247 7 C 0.155 3.845 8 O -0.328 6.328 9 C 0.018 3.982 10 C -0.170 4.170 11 C -0.038 4.038 12 C 0.056 3.944 13 H -0.012 1.012 14 C -0.095 4.095 15 C -0.533 4.533 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.033 0.967 35 H 0.019 0.981 36 H 0.025 0.975 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 13.432 -8.250 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.098 3.902 4 C -0.266 4.266 5 C -0.067 4.067 6 C -0.266 4.266 7 C 0.109 3.891 8 O -0.241 6.241 9 C -0.076 4.076 10 C -0.171 4.171 11 C -0.076 4.076 12 C 0.037 3.963 13 H 0.006 0.994 14 C -0.153 4.153 15 C -0.571 4.571 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.093 0.907 24 H 0.127 0.873 25 H 0.081 0.919 26 H 0.170 0.830 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.345 13.043 -8.069 16.598 hybrid contribution 0.359 -0.756 0.394 0.925 sum -5.987 12.287 -7.674 15.675 Atomic orbital electron populations 1.23322 0.76569 1.05133 1.02369 1.86142 1.23424 1.27306 1.88268 1.18758 0.90999 0.85283 0.95172 1.21381 1.00971 0.91559 1.12670 1.21054 0.93620 0.97744 0.94236 1.21410 0.95351 0.97245 1.12558 1.18588 0.83069 0.92886 0.94580 1.86176 1.17200 1.32656 1.88085 1.23329 0.99850 0.82108 1.02306 1.18817 0.91763 0.94769 1.11773 1.20108 0.96725 0.92402 0.98318 1.18467 0.93817 0.93195 0.90771 0.99371 1.21388 0.98492 0.96101 0.99313 1.21544 1.37362 1.05644 0.92566 0.93245 1.25768 0.97162 1.00337 0.95365 1.70125 1.44021 1.42758 0.99160 0.85650 0.79526 0.79322 0.77668 1.19771 1.20771 1.19283 0.90658 0.87292 0.91917 0.82960 0.81857 0.82730 0.91925 0.87137 0.90889 0.93967 0.93026 0.94751 0.96155 0.95603 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.34 -13.07 9.54 -92.43 -0.88 -13.95 16 3 C 0.14 5.45 6.66 22.49 0.15 5.60 16 4 C -0.25 -7.07 9.04 22.38 0.20 -6.86 16 5 C -0.05 -1.20 10.04 22.24 0.22 -0.98 16 6 C -0.25 -6.82 9.04 22.38 0.20 -6.62 16 7 C 0.15 5.61 5.48 22.49 0.12 5.73 16 8 O -0.33 -11.58 7.70 -92.33 -0.71 -12.29 16 9 C 0.02 0.41 9.81 113.37 1.11 1.53 16 10 C -0.17 -7.20 4.74 -19.67 -0.09 -7.30 16 11 C -0.04 -1.88 4.37 29.85 0.13 -1.75 16 12 C 0.06 3.18 2.15 -11.54 -0.02 3.16 16 13 H -0.01 -0.77 8.09 -2.39 -0.02 -0.79 16 14 C -0.10 -5.10 7.71 71.98 0.55 -4.54 16 15 C -0.53 -32.28 8.48 25.60 0.22 -32.06 16 16 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 17 C 0.01 0.70 5.16 84.65 0.44 1.14 16 18 N -0.92 -57.44 12.17 21.45 0.26 -57.18 16 19 Si 0.95 46.26 29.55 68.60 2.03 48.28 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 24 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 26 H 0.15 3.31 6.29 -2.91 -0.02 3.29 16 27 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.16 3.16 6.29 -2.91 -0.02 3.14 16 29 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 30 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.07 1.29 7.66 -2.38 -0.02 1.27 16 32 H 0.04 2.14 7.54 -2.39 -0.02 2.12 16 33 H 0.05 2.52 7.53 -2.39 -0.02 2.50 16 34 H 0.03 1.74 7.69 -2.38 -0.02 1.72 16 35 H 0.02 0.99 6.40 -2.39 -0.02 0.97 16 36 H 0.02 1.48 6.81 -2.39 -0.02 1.46 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -74.86 300.45 6.09 -68.77 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.05 Total: 7.71 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 4.35 Total: -41.34 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.26 Total: -57.18 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.59 Total: -26.24 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.86 6.09 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.117 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds