Wall clock time and date at job start Mon Mar 30 2020 06:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.46935 * 2 1 4 4 C 1.35990 * 116.99804 * 179.97438 * 3 2 1 5 5 C 1.38715 * 119.99833 * 0.02562 * 4 3 2 6 6 C 1.38105 * 119.99851 * 179.97438 * 5 4 3 7 7 C 1.50706 * 120.00145 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47294 * 265.00612 * 7 6 5 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47548 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47233 * 119.99722 * 12 10 8 15 15 H 1.48500 * 109.46790 * 239.99650 * 12 10 8 16 16 C 1.38718 * 120.00341 * 0.30284 * 6 5 4 17 17 O 1.35980 * 120.00377 * 179.70441 * 16 6 5 18 18 C 1.42896 * 117.00067 * 179.97438 * 17 16 6 19 19 C 1.38683 * 119.99612 * 359.41943 * 16 6 5 20 20 C 1.38152 * 119.99686 * 0.55567 * 19 16 6 21 21 C 1.50708 * 119.99901 * 179.76653 * 20 19 16 22 22 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47545 * 300.00225 * 1 2 3 24 24 H 1.09007 * 109.46859 * 60.00593 * 1 2 3 25 25 H 1.08997 * 109.46846 * 240.00011 * 2 1 3 26 26 H 1.09003 * 109.46512 * 119.99785 * 2 1 3 27 27 H 1.08001 * 120.00305 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46953 * 25.00054 * 7 6 5 29 29 H 1.09000 * 109.47318 * 144.99652 * 7 6 5 30 30 H 0.96997 * 119.99752 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.47480 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.47642 * 299.99772 * 18 17 16 33 33 H 1.09003 * 109.47232 * 60.00332 * 18 17 16 34 34 H 1.07992 * 120.00021 * 180.29941 * 19 16 6 35 35 H 1.09001 * 109.46737 * 269.97856 * 21 20 19 36 36 H 1.08999 * 109.46721 * 29.97719 * 21 20 19 37 37 H 1.08997 * 109.47014 * 149.98295 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1995 0.4253 0.0005 6 6 5.5686 0.6063 0.0005 7 6 6.4867 -0.5889 -0.0001 8 6 6.8908 -0.9126 1.4152 9 1 6.5203 -0.3126 2.2332 10 6 7.7344 -1.9740 1.6655 11 7 8.1860 -2.7043 0.6693 12 14 8.2360 -2.3748 3.4197 13 1 7.5973 -1.4096 4.3501 14 1 7.7973 -3.7528 3.7575 15 1 9.7126 -2.2805 3.5461 16 6 6.0989 1.8881 0.0069 17 8 7.4470 2.0662 0.0130 18 6 7.9233 3.4134 0.0188 19 6 5.2541 2.9879 0.0011 20 6 3.8845 2.8069 0.0006 21 6 2.9665 4.0021 -0.0004 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.7867 -0.5727 0.0005 28 1 5.9693 -1.4442 -0.4348 29 1 7.3755 -0.3640 -0.5895 30 1 8.7792 -3.4513 0.8455 31 1 9.0133 3.4135 0.0238 32 1 7.5637 3.9299 -0.8712 33 1 7.5563 3.9247 0.9088 34 1 5.6669 3.9858 0.0012 35 1 2.7444 4.2904 1.0270 36 1 3.4514 4.8322 -0.5141 37 1 2.0397 3.7479 -0.5148 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:41 Heat of formation + Delta-G solvation = -68.108610 kcal Electronic energy + Delta-G solvation = -18373.292973 eV Core-core repulsion = 15501.910891 eV Total energy + Delta-G solvation = -2871.382082 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00590 -38.48491 -36.10110 -33.84659 -32.12200 -31.35797 -28.71952 -28.63302 -27.00797 -25.19636 -23.66607 -22.37029 -20.98276 -20.35307 -17.13667 -16.84482 -16.24020 -16.13998 -15.79703 -15.03170 -14.53389 -14.00539 -13.95380 -13.47695 -13.09909 -12.60148 -12.53510 -12.40096 -12.36299 -12.18513 -11.91771 -11.46625 -11.41659 -11.06900 -11.00960 -10.80508 -10.77835 -10.43842 -10.31413 -9.80363 -9.40632 -9.29223 -8.34893 -8.04248 -6.96459 -5.96128 -3.98326 1.90477 2.12816 3.33109 3.40262 3.45841 3.57606 4.00441 4.32688 4.53750 5.06867 5.11329 5.25983 5.29155 5.38197 5.40509 5.48009 5.54369 5.57396 5.62327 5.83695 5.86962 5.87548 5.91376 5.97443 6.06926 6.09427 6.24688 6.62443 6.67869 6.96353 7.05780 7.20432 7.63645 7.82060 7.84168 7.99657 8.18423 8.41090 9.05261 9.63637 11.13871 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.007329 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.951258 B = 3819.274700 C = 5002.145524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.320 6.320 4 C 0.089 3.911 5 C -0.171 4.171 6 C -0.030 4.030 7 C 0.056 3.944 8 C -0.499 4.499 9 H 0.055 0.945 10 C 0.057 3.943 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.093 3.907 17 O -0.295 6.295 18 C 0.029 3.971 19 C -0.177 4.177 20 C -0.112 4.112 21 C -0.094 4.094 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.026 0.974 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 10.221 -2.301 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.235 6.235 4 C 0.044 3.956 5 C -0.190 4.190 6 C -0.031 4.031 7 C 0.019 3.981 8 C -0.537 4.537 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.536 5.536 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.048 3.952 17 O -0.208 6.208 18 C -0.067 4.067 19 C -0.196 4.196 20 C -0.113 4.113 21 C -0.151 4.151 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.878 10.070 -2.337 14.299 hybrid contribution 0.461 -0.285 1.005 1.142 sum -9.417 9.785 -1.332 13.646 Atomic orbital electron populations 1.21746 0.93371 1.02460 1.02973 1.22694 0.95121 0.82721 1.01693 1.85958 1.19413 1.28442 1.89732 1.18603 0.81848 0.93497 1.01617 1.20988 0.92955 0.97727 1.07345 1.19900 0.93685 0.94381 0.95115 1.18222 0.93253 0.88616 0.97981 1.21028 1.28037 1.12921 0.91761 0.92693 1.24971 0.96084 0.96247 0.97034 1.69970 1.33861 1.19124 1.30612 0.86515 0.78345 0.78080 0.84981 1.19769 1.21045 1.20968 1.18777 0.82468 0.93395 1.00583 1.86296 1.18837 1.26756 1.88870 1.22926 1.00286 0.83288 1.00210 1.20790 0.92584 0.97719 1.08532 1.18701 0.93139 0.92249 1.07190 1.20482 0.98384 0.94728 1.01523 0.90704 0.91841 0.91910 0.92224 0.91994 0.85254 0.95607 0.94510 0.93042 0.88920 0.93645 0.93475 0.85811 0.92121 0.92498 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.13 16 2 C 0.05 0.72 5.46 37.16 0.20 0.92 16 3 O -0.32 -5.26 9.18 -19.71 -0.18 -5.45 16 4 C 0.09 1.64 6.66 -39.24 -0.26 1.38 16 5 C -0.17 -3.52 8.67 -39.45 -0.34 -3.87 16 6 C -0.03 -0.70 5.08 -104.49 -0.53 -1.23 16 7 C 0.06 1.51 4.82 -29.03 -0.14 1.37 16 8 C -0.50 -14.49 9.09 -34.44 -0.31 -14.80 16 9 H 0.05 1.60 7.74 -52.48 -0.41 1.20 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 12 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.09 1.97 6.66 -39.24 -0.26 1.71 16 17 O -0.29 -6.23 9.63 -19.68 -0.19 -6.42 16 18 C 0.03 0.42 9.81 101.05 0.99 1.41 16 19 C -0.18 -3.16 8.69 -39.45 -0.34 -3.51 16 20 C -0.11 -1.95 5.89 -104.49 -0.62 -2.57 16 21 C -0.09 -1.29 9.79 36.01 0.35 -0.94 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 26 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 27 H 0.13 2.52 6.29 -52.49 -0.33 2.19 16 28 H 0.03 0.71 8.05 -51.93 -0.42 0.30 16 29 H 0.04 1.06 7.70 -51.93 -0.40 0.66 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.57 7.65 -51.93 -0.40 0.18 16 33 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 34 H 0.12 1.82 6.29 -52.49 -0.33 1.49 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -32.35 310.65 -6.48 -38.84 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.53 Total: -2.72 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -0.98 Total: -19.67 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.37 Total: -11.87 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.35 -6.48 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.272 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds