Wall clock time and date at job start Mon Mar 30 2020 06:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.46935 * 2 1 4 4 C 1.35990 * 116.99804 * 179.97438 * 3 2 1 5 5 C 1.38715 * 119.99833 * 0.02562 * 4 3 2 6 6 C 1.38105 * 119.99851 * 179.97438 * 5 4 3 7 7 C 1.50706 * 120.00145 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47294 * 265.00612 * 7 6 5 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47548 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47233 * 119.99722 * 12 10 8 15 15 H 1.48500 * 109.46790 * 239.99650 * 12 10 8 16 16 C 1.38718 * 120.00341 * 0.30284 * 6 5 4 17 17 O 1.35980 * 120.00377 * 179.70441 * 16 6 5 18 18 C 1.42896 * 117.00067 * 179.97438 * 17 16 6 19 19 C 1.38683 * 119.99612 * 359.41943 * 16 6 5 20 20 C 1.38152 * 119.99686 * 0.55567 * 19 16 6 21 21 C 1.50708 * 119.99901 * 179.76653 * 20 19 16 22 22 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47545 * 300.00225 * 1 2 3 24 24 H 1.09007 * 109.46859 * 60.00593 * 1 2 3 25 25 H 1.08997 * 109.46846 * 240.00011 * 2 1 3 26 26 H 1.09003 * 109.46512 * 119.99785 * 2 1 3 27 27 H 1.08001 * 120.00305 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46953 * 25.00054 * 7 6 5 29 29 H 1.09000 * 109.47318 * 144.99652 * 7 6 5 30 30 H 0.96997 * 119.99752 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.47480 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.47642 * 299.99772 * 18 17 16 33 33 H 1.09003 * 109.47232 * 60.00332 * 18 17 16 34 34 H 1.07992 * 120.00021 * 180.29941 * 19 16 6 35 35 H 1.09001 * 109.46737 * 269.97856 * 21 20 19 36 36 H 1.08999 * 109.46721 * 29.97719 * 21 20 19 37 37 H 1.08997 * 109.47014 * 149.98295 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1995 0.4253 0.0005 6 6 5.5686 0.6063 0.0005 7 6 6.4867 -0.5889 -0.0001 8 6 6.8908 -0.9126 1.4152 9 1 6.5203 -0.3126 2.2332 10 6 7.7344 -1.9740 1.6655 11 7 8.1860 -2.7043 0.6693 12 14 8.2360 -2.3748 3.4197 13 1 7.5973 -1.4096 4.3501 14 1 7.7973 -3.7528 3.7575 15 1 9.7126 -2.2805 3.5461 16 6 6.0989 1.8881 0.0069 17 8 7.4470 2.0662 0.0130 18 6 7.9233 3.4134 0.0188 19 6 5.2541 2.9879 0.0011 20 6 3.8845 2.8069 0.0006 21 6 2.9665 4.0021 -0.0004 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.7867 -0.5727 0.0005 28 1 5.9693 -1.4442 -0.4348 29 1 7.3755 -0.3640 -0.5895 30 1 8.7792 -3.4513 0.8455 31 1 9.0133 3.4135 0.0238 32 1 7.5637 3.9299 -0.8712 33 1 7.5563 3.9247 0.9088 34 1 5.6669 3.9858 0.0012 35 1 2.7444 4.2904 1.0270 36 1 3.4514 4.8322 -0.5141 37 1 2.0397 3.7479 -0.5148 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:40 Heat of formation + Delta-G solvation = -87.754504 kcal Electronic energy + Delta-G solvation = -18374.144883 eV Core-core repulsion = 15501.910891 eV Total energy + Delta-G solvation = -2872.233992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45048 -39.86351 -37.52316 -35.70860 -33.97751 -32.41276 -30.48369 -30.02951 -28.33641 -26.85297 -24.99669 -24.09141 -22.31389 -21.88047 -18.64369 -18.44503 -18.21236 -17.59015 -17.01590 -16.53422 -16.39801 -15.44272 -15.28152 -14.65135 -14.43191 -14.28153 -14.09538 -13.93128 -13.52766 -13.36369 -13.16730 -13.00701 -12.88299 -12.59502 -12.55712 -12.40269 -12.22231 -12.10855 -11.90172 -11.58108 -11.18471 -10.98756 -10.60276 -9.60715 -8.50398 -8.15677 -6.30925 0.38677 0.61259 1.36702 1.37669 1.51218 2.33815 2.39235 2.65455 2.84878 3.11386 3.87903 3.89005 4.07632 4.12902 4.22249 4.35108 4.40517 4.42044 4.46802 4.61424 4.74146 4.76126 4.87842 4.90556 4.96517 4.97905 5.03004 5.19561 5.25467 5.36380 5.42461 5.48464 5.69574 5.75927 5.92358 6.18329 6.45749 6.75486 6.79432 7.35865 8.91224 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.007329 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.951258 B = 3819.274700 C = 5002.145524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 O -0.318 6.318 4 C 0.085 3.915 5 C -0.179 4.179 6 C -0.075 4.075 7 C 0.071 3.929 8 C -0.516 4.516 9 H 0.047 0.953 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.965 3.035 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.275 1.275 16 C 0.078 3.922 17 O -0.335 6.335 18 C 0.018 3.982 19 C -0.167 4.167 20 C -0.105 4.105 21 C -0.091 4.091 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.000 1.000 29 H 0.002 0.998 30 H 0.265 0.735 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.162 0.838 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 12.355 -1.300 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 O -0.233 6.233 4 C 0.040 3.960 5 C -0.197 4.197 6 C -0.075 4.075 7 C 0.034 3.966 8 C -0.554 4.554 9 H 0.065 0.935 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.200 1.200 16 C 0.033 3.967 17 O -0.250 6.250 18 C -0.076 4.076 19 C -0.185 4.185 20 C -0.106 4.106 21 C -0.148 4.148 22 H 0.114 0.886 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.179 0.821 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.212 12.216 -1.342 16.635 hybrid contribution 0.820 -0.887 0.636 1.365 sum -10.392 11.329 -0.706 15.389 Atomic orbital electron populations 1.21752 0.90338 1.04060 1.03546 1.22976 0.97472 0.81494 1.01272 1.85975 1.17918 1.30038 1.89374 1.18719 0.82588 0.93451 1.01222 1.20962 0.92402 0.98646 1.07721 1.19661 0.94157 0.94087 0.99634 1.17847 0.92535 0.89728 0.96468 1.21274 1.28446 1.13192 0.92495 0.93478 1.25902 0.95841 0.95893 1.01755 1.70094 1.34413 1.19653 1.33055 0.85402 0.78197 0.78221 0.79262 1.19191 1.19825 1.20037 1.18910 0.83163 0.93548 1.01034 1.86231 1.19045 1.30629 1.89069 1.23281 1.01305 0.80944 1.02076 1.21122 0.92365 0.98247 1.06770 1.19291 0.93738 0.93210 1.04333 1.20571 0.97779 0.93578 1.02859 0.88622 0.91387 0.91147 0.92399 0.92835 0.85663 0.98176 0.97973 0.92616 0.87471 0.91270 0.91833 0.82090 0.90704 0.89825 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.04 1.14 5.46 71.98 0.39 1.53 16 3 O -0.32 -10.03 9.18 -93.44 -0.86 -10.88 16 4 C 0.09 3.09 6.66 22.49 0.15 3.24 16 5 C -0.18 -7.60 8.67 22.35 0.19 -7.41 16 6 C -0.07 -3.63 5.08 -19.78 -0.10 -3.73 16 7 C 0.07 4.12 4.82 29.10 0.14 4.26 16 8 C -0.52 -31.31 9.09 25.60 0.23 -31.08 16 9 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 10 C 0.00 0.21 5.46 84.65 0.46 0.68 16 11 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 12 Si 0.96 46.08 29.54 68.60 2.03 48.10 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.08 3.37 6.66 22.49 0.15 3.52 16 17 O -0.34 -14.45 9.63 -93.32 -0.90 -15.35 16 18 C 0.02 0.51 9.81 113.37 1.11 1.62 16 19 C -0.17 -5.59 8.69 22.36 0.19 -5.39 16 20 C -0.10 -3.40 5.89 -19.78 -0.12 -3.52 16 21 C -0.09 -2.11 9.79 71.24 0.70 -1.41 16 22 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.06 1.54 7.66 -2.39 -0.02 1.53 16 26 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 27 H 0.13 5.20 6.29 -2.91 -0.02 5.19 16 28 H 0.00 0.00 8.05 -2.39 -0.02 -0.02 16 29 H 0.00 0.13 7.70 -2.39 -0.02 0.11 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.58 16 32 H 0.07 1.57 7.65 -2.39 -0.02 1.55 16 33 H 0.06 1.54 7.67 -2.39 -0.02 1.52 16 34 H 0.16 4.09 6.29 -2.91 -0.02 4.07 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 37 H 0.07 1.59 7.53 -2.39 -0.02 1.57 16 Total: -1.00 -73.14 310.65 5.85 -67.30 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.05 Total: 8.37 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.25 Total: -39.53 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.01 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.76 Total: -26.23 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.14 5.85 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.459 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds