Wall clock time and date at job start Mon Mar 30 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35896 * 116.99778 * 2 1 4 4 C 1.38646 * 120.03075 * 0.02562 * 3 2 1 5 5 C 1.38620 * 119.89195 * 180.02562 * 4 3 2 6 6 O 1.35896 * 120.02664 * 179.97438 * 5 4 3 7 7 C 1.42905 * 117.00039 * 359.97438 * 6 5 4 8 8 C 1.38787 * 119.94186 * 0.25594 * 5 4 3 9 9 C 1.50701 * 119.97007 * 179.72258 * 8 5 4 10 10 H 1.09002 * 109.47111 * 0.02562 * 9 8 5 11 11 C 1.53002 * 109.47378 * 239.99933 * 9 8 5 12 12 C 1.50707 * 109.47034 * 119.99765 * 9 8 5 13 13 H 1.07995 * 120.00277 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00022 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99977 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 120.00134 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47230 * 59.99864 * 16 14 12 18 18 H 1.48498 * 109.47183 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46948 * 300.00008 * 16 14 12 20 20 C 1.38155 * 120.05812 * 359.46634 * 8 5 4 21 21 C 1.38194 * 120.10709 * 0.55586 * 20 8 5 22 22 C 1.50704 * 119.97330 * 179.72444 * 21 20 8 23 23 H 1.08999 * 109.46728 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46904 * 299.99728 * 1 2 3 25 25 H 1.08998 * 109.46882 * 59.99729 * 1 2 3 26 26 H 1.08007 * 120.05713 * 0.04728 * 4 3 2 27 27 H 1.09001 * 109.47103 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 29 29 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 30 30 H 1.08990 * 109.46959 * 59.99943 * 11 9 8 31 31 H 1.09001 * 109.47388 * 180.02562 * 11 9 8 32 32 H 1.09002 * 109.46919 * 300.00016 * 11 9 8 33 33 H 0.96995 * 120.00152 * 179.97438 * 15 14 12 34 34 H 1.07997 * 119.94519 * 180.27785 * 20 8 5 35 35 H 1.09001 * 109.46708 * 269.97563 * 22 21 20 36 36 H 1.08991 * 109.47239 * 29.97545 * 22 21 20 37 37 H 1.08999 * 109.46685 * 149.97729 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3740 0.0005 5 6 1.9237 3.6076 0.0000 6 8 1.1868 4.7495 0.0000 7 6 -0.2348 4.6041 0.0000 8 6 3.3099 3.6756 -0.0064 9 6 3.9979 5.0163 -0.0134 10 1 3.2495 5.8088 -0.0118 11 6 4.8668 5.1373 -1.2669 12 6 4.8648 5.1424 1.2129 13 1 4.9131 4.3326 1.9257 14 6 5.5971 6.2914 1.4243 15 7 5.5388 7.2774 0.5561 16 14 6.6722 6.4474 2.9439 17 1 7.6915 5.3675 2.9421 18 1 7.3501 7.7686 2.9372 19 1 5.8292 6.3303 4.1608 20 6 4.0596 2.5151 -0.0012 21 6 3.4316 1.2841 -0.0011 22 6 4.2524 0.0202 -0.0016 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3191 0.0017 27 1 -0.7008 5.5895 0.0005 28 1 -0.5440 4.0560 -0.8900 29 1 -0.5439 4.0561 0.8900 30 1 4.2399 5.0461 -2.1537 31 1 5.3648 6.1069 -1.2716 32 1 5.6153 4.3449 -1.2680 33 1 6.0537 8.0859 0.7050 34 1 5.1382 2.5702 -0.0017 35 1 4.4495 -0.2845 -1.0295 36 1 5.1970 0.2002 0.5114 37 1 3.7042 -0.7691 0.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:56 Heat of formation + Delta-G solvation = -80.380234 kcal Electronic energy + Delta-G solvation = -18716.258905 eV Core-core repulsion = 15844.344685 eV Total energy + Delta-G solvation = -2871.914220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53009 -39.72439 -38.06116 -35.95671 -33.40522 -32.45564 -29.77298 -28.80388 -28.22251 -27.16497 -26.37871 -23.98602 -22.41582 -21.03959 -19.55259 -18.41045 -17.71630 -16.89656 -16.81199 -16.46056 -16.30194 -15.64446 -15.58350 -14.91781 -14.65633 -14.32207 -14.04293 -13.67130 -13.37304 -13.12644 -12.93827 -12.79021 -12.68683 -12.61558 -12.47711 -12.28479 -12.17249 -12.14103 -11.84660 -11.22165 -11.14470 -10.84956 -10.40653 -9.44849 -8.54380 -8.02898 -6.17791 0.48194 0.63494 1.42726 1.44414 1.52130 2.41571 2.45754 2.54035 2.88596 3.23019 3.87980 4.04830 4.16236 4.29602 4.34746 4.37611 4.41175 4.47697 4.67432 4.70424 4.74974 4.81837 4.84950 4.91308 4.93409 5.06558 5.26175 5.33318 5.36313 5.45846 5.60961 5.72707 5.91504 6.08917 6.12211 6.36135 6.43188 6.70182 6.91381 7.48946 9.00398 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.006989 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.387669 B = 4005.413901 C = 4620.047422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.139 3.861 4 C -0.286 4.286 5 C 0.132 3.868 6 O -0.335 6.335 7 C 0.018 3.982 8 C -0.128 4.128 9 C 0.084 3.916 10 H 0.005 0.995 11 C -0.119 4.119 12 C -0.519 4.519 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.276 1.276 20 C -0.050 4.050 21 C -0.165 4.165 22 C -0.089 4.089 23 H 0.125 0.875 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.157 0.843 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 -13.021 -1.715 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.094 3.906 4 C -0.305 4.305 5 C 0.087 3.913 6 O -0.249 6.249 7 C -0.076 4.076 8 C -0.129 4.129 9 C 0.066 3.934 10 H 0.023 0.977 11 C -0.177 4.177 12 C -0.557 4.557 13 H 0.068 0.932 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.779 3.221 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.201 1.201 20 C -0.068 4.068 21 C -0.166 4.166 22 C -0.146 4.146 23 H 0.143 0.857 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.174 0.826 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.706 -12.839 -1.748 16.808 hybrid contribution 0.139 0.744 0.711 1.038 sum -10.566 -12.096 -1.037 16.094 Atomic orbital electron populations 1.23330 0.76932 1.05586 1.01849 1.86021 1.23015 1.25824 1.88771 1.18455 0.91448 0.84011 0.96733 1.21284 1.01092 0.90867 1.17243 1.18795 0.90848 0.85217 0.96440 1.86186 1.20675 1.29488 1.88582 1.23310 0.77238 1.05064 1.01998 1.19844 0.90718 0.97705 1.04649 1.17454 0.93155 0.88715 0.94107 0.97677 1.21619 0.98712 1.01585 0.95747 1.21400 1.26151 1.01367 1.06746 0.93250 1.25726 0.98145 0.95449 0.99239 1.70023 1.42589 1.06350 1.36852 0.85685 0.79057 0.77394 0.79967 1.19290 1.20775 1.20130 1.20595 0.99719 0.89868 0.96603 1.19420 0.91257 0.96350 1.09573 1.20492 0.98505 0.93132 1.02480 0.85694 0.92339 0.92112 0.82571 0.86915 0.91457 0.91877 0.96351 0.92295 0.94782 0.93028 0.85525 0.90960 0.91495 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -8.75 9.54 -92.38 -0.88 -9.63 16 3 C 0.14 4.60 6.66 22.49 0.15 4.75 16 4 C -0.29 -9.53 8.02 22.46 0.18 -9.35 16 5 C 0.13 5.51 6.66 22.49 0.15 5.66 16 6 O -0.34 -13.68 9.26 -92.39 -0.86 -14.54 16 7 C 0.02 0.47 9.81 113.37 1.11 1.59 16 8 C -0.13 -6.02 4.75 -19.75 -0.09 -6.12 16 9 C 0.08 4.59 2.44 -12.28 -0.03 4.56 16 10 H 0.01 0.31 6.99 -2.39 -0.02 0.29 16 11 C -0.12 -6.18 8.79 71.98 0.63 -5.54 16 12 C -0.52 -29.93 8.23 25.60 0.21 -29.72 16 13 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 14 C 0.01 0.72 5.30 84.65 0.45 1.17 16 15 N -0.92 -54.85 11.32 21.45 0.24 -54.61 16 16 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C -0.05 -2.08 8.34 22.24 0.19 -1.90 16 21 C -0.17 -5.87 5.89 -19.75 -0.12 -5.98 16 22 C -0.09 -2.51 9.79 71.24 0.70 -1.81 16 23 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 0.95 7.66 -2.38 -0.02 0.93 16 25 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 26 H 0.16 3.99 4.54 -2.91 -0.01 3.98 16 27 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 29 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 32 H 0.03 1.65 7.40 -2.39 -0.02 1.63 16 33 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.13 5.33 7.58 -2.91 -0.02 5.31 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 37 H 0.07 1.84 7.53 -2.39 -0.02 1.82 16 Total: -1.00 -69.01 302.76 6.23 -62.78 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.06 Total: 10.30 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.64 Total: -41.28 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.24 Total: -54.61 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.74 Total: -24.16 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.01 6.23 -62.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.597 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds