Wall clock time and date at job start Mon Mar 30 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99665 * 2 1 4 4 C 1.38799 * 120.02491 * 0.02562 * 3 2 1 5 5 C 1.38155 * 120.05134 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11129 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.97691 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47695 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46891 * 59.99298 * 7 6 5 10 10 H 1.07995 * 120.00369 * 273.31089 * 9 7 6 11 11 C 1.37882 * 119.99503 * 93.31392 * 9 7 6 12 12 N 1.31510 * 120.00387 * 4.22663 * 11 9 7 13 13 Si 1.86803 * 119.99542 * 184.22173 * 11 9 7 14 14 H 1.48505 * 109.47166 * 270.00046 * 13 11 9 15 15 H 1.48501 * 109.47437 * 30.00046 * 13 11 9 16 16 H 1.48504 * 109.46904 * 150.00207 * 13 11 9 17 17 C 1.53004 * 109.47000 * 299.99913 * 7 6 5 18 18 C 1.52997 * 109.46914 * 177.17333 * 17 7 6 19 19 C 1.52998 * 109.46795 * 297.17572 * 17 7 6 20 20 C 1.38753 * 120.05294 * 0.25201 * 6 5 4 21 21 O 1.35895 * 120.02710 * 179.72953 * 20 6 5 22 22 C 1.38612 * 120.02890 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.47185 * 299.99718 * 1 2 3 24 24 H 1.08996 * 109.47385 * 60.00055 * 1 2 3 25 25 H 1.09004 * 109.46470 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.97635 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.94691 * 180.02562 * 5 4 3 28 28 H 0.96999 * 119.99647 * 353.94466 * 12 11 9 29 29 H 1.09000 * 109.46744 * 57.17555 * 17 7 6 30 30 H 1.08998 * 109.47337 * 63.82744 * 18 17 7 31 31 H 1.09001 * 109.47105 * 183.81953 * 18 17 7 32 32 H 1.08994 * 109.47386 * 303.82133 * 18 17 7 33 33 H 1.09001 * 109.47307 * 59.99776 * 19 17 7 34 34 H 1.08999 * 109.47146 * 180.02562 * 19 17 7 35 35 H 1.09006 * 109.46812 * 299.99739 * 19 17 7 36 36 H 0.96711 * 113.99990 * 90.00177 * 21 20 6 37 37 H 1.07999 * 120.05024 * 0.04393 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9170 3.6066 0.0011 6 6 3.2970 3.6823 0.0005 7 6 3.9772 5.0270 0.0005 8 1 5.0583 4.8874 0.0005 9 6 3.5704 5.7957 1.2313 10 1 2.6720 6.3949 1.2213 11 6 4.3454 5.7340 2.3700 12 7 5.4819 5.0724 2.3570 13 14 3.7810 6.5904 3.9313 14 1 4.3039 7.9802 3.9503 15 1 2.2968 6.6194 3.9712 16 1 4.2936 5.8524 5.1136 17 6 3.5634 5.8079 -1.2484 18 6 4.1981 7.1995 -1.2133 19 6 4.0384 5.0619 -2.4969 20 6 4.0566 2.5212 -0.0058 21 8 5.4134 2.5963 -0.0119 22 6 3.4301 1.2843 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.2120 2.3187 0.0014 27 1 1.3275 4.5114 0.0019 28 1 5.7331 4.5553 1.5757 29 1 2.4779 5.9041 -1.2736 30 1 5.2832 7.1052 -1.2567 31 1 3.8495 7.7795 -2.0678 32 1 3.9139 7.7053 -0.2906 33 1 3.5863 4.0704 -2.5218 34 1 3.7440 5.6184 -3.3867 35 1 5.1239 4.9657 -2.4716 36 1 5.8103 2.6158 0.8698 37 1 4.0196 0.3793 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261089132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:10 Heat of formation + Delta-G solvation = -78.236935 kcal Electronic energy + Delta-G solvation = -19025.671928 eV Core-core repulsion = 16153.850649 eV Total energy + Delta-G solvation = -2871.821279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83045 -38.18489 -36.02483 -34.92779 -32.46494 -30.27209 -29.11403 -27.27087 -26.59134 -25.45178 -23.23916 -22.06545 -20.80353 -19.05768 -18.22170 -16.83107 -16.28933 -15.96693 -15.43740 -14.82180 -14.15003 -14.03774 -13.83086 -13.44438 -13.08524 -12.95239 -12.73751 -12.10994 -11.88096 -11.69337 -11.47114 -11.19656 -10.94057 -10.85161 -10.52229 -10.43309 -10.22636 -10.17069 -10.09537 -9.62195 -9.23890 -8.68580 -8.36065 -8.14867 -7.25227 -6.39533 -4.09365 1.88024 2.14343 3.39575 3.43166 3.56103 3.57885 4.30093 4.49845 5.07997 5.18202 5.27124 5.31073 5.46154 5.48073 5.57739 5.77822 5.90931 5.96808 6.01056 6.20530 6.27114 6.36006 6.53651 6.61445 6.63374 6.71332 6.84962 6.92616 7.06351 7.14416 7.23370 7.32460 7.42583 7.66250 7.82194 8.18660 8.36986 8.40877 8.84757 9.60149 10.98322 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.008452 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.104861 B = 3312.146884 C = 3862.802976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.105 3.895 4 C -0.217 4.217 5 C -0.063 4.063 6 C -0.077 4.077 7 C 0.062 3.938 8 H 0.057 0.943 9 C -0.577 4.577 10 H 0.051 0.949 11 C 0.023 3.977 12 N -0.913 5.913 13 Si 1.065 2.935 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.285 1.285 17 C -0.077 4.077 18 C -0.129 4.129 19 C -0.143 4.143 20 C 0.128 3.872 21 O -0.496 6.496 22 C -0.181 4.181 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.270 0.730 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.390 0.610 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 -4.901 -4.580 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.061 3.939 4 C -0.236 4.236 5 C -0.081 4.081 6 C -0.078 4.078 7 C 0.043 3.957 8 H 0.075 0.925 9 C -0.614 4.614 10 H 0.069 0.931 11 C -0.181 4.181 12 N -0.551 5.551 13 Si 0.894 3.106 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.211 1.211 17 C -0.096 4.096 18 C -0.186 4.186 19 C -0.201 4.201 20 C 0.083 3.917 21 O -0.306 6.306 22 C -0.200 4.200 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.505 -4.734 -3.635 8.828 hybrid contribution -0.741 -0.350 -0.928 1.238 sum -7.246 -5.084 -4.562 9.958 Atomic orbital electron populations 1.22925 0.79275 1.03012 1.01149 1.85989 1.20650 1.27566 1.89736 1.18534 0.91622 0.83700 1.00080 1.21128 0.99161 0.92597 1.10699 1.20615 0.94266 0.96139 0.97101 1.21046 0.93540 0.97177 0.96039 1.18067 0.97050 0.87289 0.93261 0.92532 1.21881 1.12117 1.30174 0.97271 0.93099 1.25750 0.93667 0.97188 1.01519 1.70814 1.20617 1.30265 1.33367 0.83598 0.75247 0.76088 0.75716 1.21433 1.21508 1.21106 1.21060 0.98721 0.95164 0.94613 1.21667 0.99833 0.96543 1.00597 1.21873 1.00968 0.99739 0.97483 1.18034 0.83088 0.90872 0.99709 1.84695 1.16117 1.95969 1.33861 1.20458 0.91670 0.98017 1.09859 0.92960 0.93071 0.88945 0.86449 0.85986 0.91674 0.93048 0.93919 0.95258 0.91325 0.93524 0.94430 0.93273 0.75257 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.35 10.50 -19.43 -0.20 -5.56 16 3 C 0.10 1.95 6.68 -39.24 -0.26 1.69 16 4 C -0.22 -3.92 9.04 -39.40 -0.36 -4.28 16 5 C -0.06 -1.28 8.77 -39.63 -0.35 -1.63 16 6 C -0.08 -1.70 3.66 -104.45 -0.38 -2.08 16 7 C 0.06 1.46 1.46 -92.92 -0.14 1.32 16 8 H 0.06 1.46 5.15 -51.93 -0.27 1.20 16 9 C -0.58 -14.87 6.47 -34.44 -0.22 -15.10 16 10 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 11 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 12 N -0.91 -25.58 13.62 55.43 0.75 -24.82 16 13 Si 1.06 24.31 29.91 -169.99 -5.08 19.22 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.08 -1.59 2.36 -90.62 -0.21 -1.81 16 18 C -0.13 -2.56 8.98 37.16 0.33 -2.23 16 19 C -0.14 -2.70 8.98 37.16 0.33 -2.37 16 20 C 0.13 2.74 6.67 -39.24 -0.26 2.48 16 21 O -0.50 -10.37 11.95 -19.41 -0.23 -10.60 16 22 C -0.18 -3.57 9.93 -39.29 -0.39 -3.96 16 23 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.12 1.76 6.29 -52.49 -0.33 1.43 16 27 H 0.12 2.40 7.55 -52.49 -0.40 2.01 16 28 H 0.27 7.34 5.03 -40.82 -0.21 7.14 16 29 H 0.05 1.05 7.29 -51.93 -0.38 0.67 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.46 6.99 -51.93 -0.36 1.10 16 33 H 0.05 0.90 7.31 -51.93 -0.38 0.52 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.39 7.57 7.95 45.56 0.36 7.93 16 37 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -29.04 301.04 -5.73 -34.77 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.50 Total: 8.54 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -1.01 Total: -26.08 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.75 Total: -24.82 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.44 Total: -16.16 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.04 -5.73 -34.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.467 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds