Wall clock time and date at job start Mon Mar 30 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99665 * 2 1 4 4 C 1.38799 * 120.02491 * 0.02562 * 3 2 1 5 5 C 1.38155 * 120.05134 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11129 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.97691 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47695 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46891 * 59.99298 * 7 6 5 10 10 H 1.07995 * 120.00369 * 273.31089 * 9 7 6 11 11 C 1.37882 * 119.99503 * 93.31392 * 9 7 6 12 12 N 1.31510 * 120.00387 * 4.22663 * 11 9 7 13 13 Si 1.86803 * 119.99542 * 184.22173 * 11 9 7 14 14 H 1.48505 * 109.47166 * 270.00046 * 13 11 9 15 15 H 1.48501 * 109.47437 * 30.00046 * 13 11 9 16 16 H 1.48504 * 109.46904 * 150.00207 * 13 11 9 17 17 C 1.53004 * 109.47000 * 299.99913 * 7 6 5 18 18 C 1.52997 * 109.46914 * 177.17333 * 17 7 6 19 19 C 1.52998 * 109.46795 * 297.17572 * 17 7 6 20 20 C 1.38753 * 120.05294 * 0.25201 * 6 5 4 21 21 O 1.35895 * 120.02710 * 179.72953 * 20 6 5 22 22 C 1.38612 * 120.02890 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.47185 * 299.99718 * 1 2 3 24 24 H 1.08996 * 109.47385 * 60.00055 * 1 2 3 25 25 H 1.09004 * 109.46470 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.97635 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.94691 * 180.02562 * 5 4 3 28 28 H 0.96999 * 119.99647 * 353.94466 * 12 11 9 29 29 H 1.09000 * 109.46744 * 57.17555 * 17 7 6 30 30 H 1.08998 * 109.47337 * 63.82744 * 18 17 7 31 31 H 1.09001 * 109.47105 * 183.81953 * 18 17 7 32 32 H 1.08994 * 109.47386 * 303.82133 * 18 17 7 33 33 H 1.09001 * 109.47307 * 59.99776 * 19 17 7 34 34 H 1.08999 * 109.47146 * 180.02562 * 19 17 7 35 35 H 1.09006 * 109.46812 * 299.99739 * 19 17 7 36 36 H 0.96711 * 113.99990 * 90.00177 * 21 20 6 37 37 H 1.07999 * 120.05024 * 0.04393 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9170 3.6066 0.0011 6 6 3.2970 3.6823 0.0005 7 6 3.9772 5.0270 0.0005 8 1 5.0583 4.8874 0.0005 9 6 3.5704 5.7957 1.2313 10 1 2.6720 6.3949 1.2213 11 6 4.3454 5.7340 2.3700 12 7 5.4819 5.0724 2.3570 13 14 3.7810 6.5904 3.9313 14 1 4.3039 7.9802 3.9503 15 1 2.2968 6.6194 3.9712 16 1 4.2936 5.8524 5.1136 17 6 3.5634 5.8079 -1.2484 18 6 4.1981 7.1995 -1.2133 19 6 4.0384 5.0619 -2.4969 20 6 4.0566 2.5212 -0.0058 21 8 5.4134 2.5963 -0.0119 22 6 3.4301 1.2843 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.2120 2.3187 0.0014 27 1 1.3275 4.5114 0.0019 28 1 5.7331 4.5553 1.5757 29 1 2.4779 5.9041 -1.2736 30 1 5.2832 7.1052 -1.2567 31 1 3.8495 7.7795 -2.0678 32 1 3.9139 7.7053 -0.2906 33 1 3.5863 4.0704 -2.5218 34 1 3.7440 5.6184 -3.3867 35 1 5.1239 4.9657 -2.4716 36 1 5.8103 2.6158 0.8698 37 1 4.0196 0.3793 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:10 Heat of formation + Delta-G solvation = -95.747073 kcal Electronic energy + Delta-G solvation = -19026.431225 eV Core-core repulsion = 16153.850649 eV Total energy + Delta-G solvation = -2872.580576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30858 -39.62091 -37.70225 -36.46314 -34.37417 -31.78101 -30.68422 -28.59234 -28.09429 -27.06099 -25.06990 -23.62822 -22.33053 -20.76506 -19.67831 -18.70783 -17.77365 -17.41551 -16.59741 -16.38404 -15.71009 -15.67650 -15.58813 -14.96375 -14.75168 -14.60349 -14.32587 -13.45035 -13.26056 -13.07640 -13.06017 -12.84868 -12.66093 -12.39667 -12.07099 -11.96974 -11.88983 -11.79601 -11.71867 -11.27384 -10.95745 -10.55435 -10.34219 -9.69059 -8.81328 -8.45608 -6.15814 0.33396 0.59870 1.55231 1.62395 1.78213 2.33439 2.59758 2.79077 3.30796 3.56492 3.90544 4.09531 4.16700 4.31187 4.35320 4.39259 4.42218 4.53901 4.63818 4.71710 4.75601 4.85397 4.98605 5.00745 5.05762 5.10198 5.24021 5.35418 5.43761 5.55779 5.59205 5.71527 5.79025 5.88405 6.25845 6.36844 6.48363 6.71987 6.86516 7.60060 8.93185 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.008452 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.104861 B = 3312.146884 C = 3862.802976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.072 4.072 6 C -0.102 4.102 7 C 0.065 3.935 8 H 0.024 0.976 9 C -0.575 4.575 10 H 0.046 0.954 11 C -0.026 4.026 12 N -0.943 5.943 13 Si 1.103 2.897 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.291 1.291 17 C -0.078 4.078 18 C -0.124 4.124 19 C -0.133 4.133 20 C 0.109 3.891 21 O -0.503 6.503 22 C -0.192 4.192 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.392 0.608 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -5.364 -5.130 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.068 3.932 4 C -0.226 4.226 5 C -0.090 4.090 6 C -0.103 4.103 7 C 0.046 3.954 8 H 0.043 0.957 9 C -0.613 4.613 10 H 0.064 0.936 11 C -0.225 4.225 12 N -0.582 5.582 13 Si 0.928 3.072 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.217 1.217 17 C -0.097 4.097 18 C -0.181 4.181 19 C -0.190 4.190 20 C 0.064 3.936 21 O -0.314 6.314 22 C -0.211 4.211 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.141 0.859 26 H 0.171 0.829 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.249 0.751 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.814 -5.200 -4.205 11.063 hybrid contribution -0.127 -0.311 -0.824 0.889 sum -8.940 -5.510 -5.029 11.644 Atomic orbital electron populations 1.23340 0.76473 1.05550 1.02175 1.85996 1.23473 1.26260 1.89201 1.18611 0.91365 0.84820 0.98433 1.21411 1.00929 0.91362 1.08930 1.20732 0.93537 0.97384 0.97359 1.20945 0.94536 0.96492 0.98305 1.17940 0.95239 0.88492 0.93747 0.95736 1.22100 1.11390 1.29707 0.98065 0.93577 1.26857 0.93612 0.97697 1.04284 1.70874 1.21860 1.31899 1.33596 0.83090 0.75741 0.75631 0.72776 1.20416 1.19892 1.21693 1.21052 0.99015 0.95338 0.94273 1.21605 0.99113 0.96423 1.00998 1.21751 1.00078 0.99513 0.97681 1.18225 0.83063 0.91577 1.00689 1.84668 1.16512 1.96076 1.34140 1.20601 0.92790 0.97667 1.10034 0.92120 0.91710 0.85894 0.82889 0.85644 0.92234 0.92525 0.95027 0.92073 0.93248 0.94216 0.91589 0.94397 0.75094 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -10.05 10.50 -92.45 -0.97 -11.02 16 3 C 0.11 3.96 6.68 22.49 0.15 4.11 16 4 C -0.21 -6.98 9.04 22.38 0.20 -6.78 16 5 C -0.07 -2.84 8.77 22.24 0.20 -2.64 16 6 C -0.10 -4.53 3.66 -19.75 -0.07 -4.60 16 7 C 0.06 3.09 1.46 -12.28 -0.02 3.08 16 8 H 0.02 1.32 5.15 -2.39 -0.01 1.31 16 9 C -0.57 -29.99 6.47 25.60 0.17 -29.83 16 10 H 0.05 2.39 7.82 -2.91 -0.02 2.37 16 11 C -0.03 -1.41 5.46 84.66 0.46 -0.94 16 12 N -0.94 -54.35 13.62 21.45 0.29 -54.05 16 13 Si 1.10 49.17 29.91 68.60 2.05 51.22 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 17 C -0.08 -3.20 2.36 -10.79 -0.03 -3.23 16 18 C -0.12 -4.87 8.98 71.98 0.65 -4.22 16 19 C -0.13 -4.89 8.98 71.98 0.65 -4.24 16 20 C 0.11 4.74 6.67 22.49 0.15 4.89 16 21 O -0.50 -21.91 11.95 -92.37 -1.10 -23.01 16 22 C -0.19 -7.46 9.93 22.46 0.22 -7.24 16 23 H 0.06 1.09 7.66 -2.39 -0.02 1.08 16 24 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 25 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.15 3.96 6.29 -2.91 -0.02 3.94 16 27 H 0.13 4.77 7.55 -2.91 -0.02 4.75 16 28 H 0.27 15.06 5.03 -92.71 -0.47 14.60 16 29 H 0.06 2.24 7.29 -2.39 -0.02 2.23 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 2.09 6.99 -2.39 -0.02 2.08 16 33 H 0.04 1.49 7.31 -2.39 -0.02 1.47 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.39 16.16 7.95 -74.05 -0.59 15.58 16 37 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -62.71 301.04 4.89 -57.82 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.78 Total: 29.21 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 3.84 Total: -50.17 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.29 Total: -54.05 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -2.07 Total: -34.03 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -62.71 4.89 -57.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.926 kcal (2) G-P(sol) polarization free energy of solvation -62.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds