Wall clock time and date at job start Mon Mar 30 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 117.00129 * 2 1 4 4 C 1.38727 * 120.05668 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94451 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05520 * 0.27241 * 5 4 3 7 7 C 1.50698 * 119.94300 * 179.69999 * 6 5 4 8 8 C 1.52998 * 109.46769 * 90.00232 * 7 6 5 9 9 C 1.53008 * 109.46953 * 179.86145 * 8 7 6 10 10 H 1.09002 * 109.46798 * 305.65736 * 9 8 7 11 11 C 1.50695 * 109.47134 * 185.65901 * 9 8 7 12 12 H 1.08002 * 120.00267 * 359.97438 * 11 9 8 13 13 C 1.37881 * 120.00345 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99289 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00222 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47067 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47188 * 119.99842 * 15 13 11 18 18 H 1.48497 * 109.46878 * 239.99798 * 15 13 11 19 19 O 1.42897 * 109.47156 * 65.65825 * 9 8 7 20 20 C 1.42900 * 114.00066 * 259.20696 * 19 9 8 21 21 C 1.38268 * 120.11131 * 359.44923 * 6 5 4 22 22 C 1.38146 * 120.05164 * 0.55010 * 21 6 5 23 23 H 1.08993 * 109.47216 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46687 * 299.99893 * 1 2 3 25 25 H 1.09004 * 109.46628 * 59.99835 * 1 2 3 26 26 H 1.08007 * 120.02368 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.96972 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47106 * 210.00367 * 7 6 5 29 29 H 1.09000 * 109.47359 * 330.00336 * 7 6 5 30 30 H 1.09001 * 109.47299 * 299.85300 * 8 7 6 31 31 H 1.08994 * 109.47275 * 59.86358 * 8 7 6 32 32 H 0.97001 * 119.99284 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47570 * 294.60143 * 20 19 9 34 34 H 1.09006 * 109.46949 * 54.59470 * 20 19 9 35 35 H 1.08997 * 109.47667 * 174.59016 * 20 19 9 36 36 H 1.07989 * 119.97305 * 180.25469 * 21 6 5 37 37 H 1.08007 * 120.02556 * 179.69960 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6758 0.0068 7 6 3.9862 5.0184 0.0142 8 6 4.2173 5.4809 -1.4258 9 6 4.9088 6.8458 -1.4183 10 1 4.3279 7.5441 -0.8158 11 6 5.0115 7.3647 -2.8294 12 1 4.6227 6.7794 -3.6496 13 6 5.6026 8.5862 -3.0736 14 7 6.0764 9.2986 -2.0748 15 14 5.7304 9.2290 -4.8228 16 1 5.1271 8.2450 -5.7571 17 1 5.0069 10.5215 -4.9294 18 1 7.1594 9.4313 -5.1726 19 8 6.2189 6.7129 -0.8632 20 6 6.3177 7.1310 0.4997 21 6 1.9211 3.6048 0.0015 22 6 1.2916 2.3751 0.0010 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0209 0.3798 -0.0005 27 1 5.1346 2.5749 0.0000 28 1 3.3584 5.7433 0.5323 29 1 4.9443 4.9352 0.5272 30 1 4.8472 4.7574 -1.9432 31 1 3.2594 5.5618 -1.9396 32 1 6.4919 10.1582 -2.2465 33 1 6.1337 8.2033 0.5652 34 1 5.5782 6.5983 1.0977 35 1 7.3165 6.9101 0.8760 36 1 1.3343 4.5113 0.0026 37 1 0.2130 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261341009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:53 Heat of formation + Delta-G solvation = -72.306508 kcal Electronic energy + Delta-G solvation = -17868.534479 eV Core-core repulsion = 14996.970362 eV Total energy + Delta-G solvation = -2871.564117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05909 -37.83620 -36.57891 -32.96911 -32.38345 -30.96065 -29.56995 -27.74054 -26.44594 -24.86354 -23.33860 -22.48829 -20.86842 -19.96667 -18.11605 -16.60029 -16.21103 -15.78599 -15.26205 -15.05351 -14.58300 -14.16275 -13.92810 -13.58711 -13.45483 -13.22585 -12.72720 -12.48389 -12.07673 -11.93923 -11.79466 -11.32721 -11.01565 -10.93981 -10.82121 -10.66698 -10.46837 -10.32809 -9.73946 -9.63006 -9.16050 -8.86673 -8.44386 -7.99001 -7.69294 -6.01401 -4.10563 1.47484 1.58062 3.24770 3.30935 3.38960 3.43236 3.90653 4.43824 4.81295 4.94464 4.99319 5.04007 5.16076 5.22205 5.29166 5.48452 5.56384 5.74347 5.78991 5.89674 6.09065 6.18661 6.26068 6.36779 6.45380 6.52943 6.56146 6.75368 6.84133 6.90019 6.94302 6.96330 7.09035 7.42439 7.47475 7.92288 8.32532 8.87573 9.13556 9.59271 11.07205 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034128 B = 0.004318 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.253826 B = 6482.191822 C = 6935.507584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.108 3.892 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.099 4.099 7 C -0.083 4.083 8 C -0.121 4.121 9 C 0.216 3.784 10 H 0.016 0.984 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.076 3.924 14 N -0.870 5.870 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 O -0.377 6.377 20 C 0.041 3.959 21 C -0.082 4.082 22 C -0.206 4.206 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.037 0.963 34 H 0.014 0.986 35 H 0.051 0.949 36 H 0.124 0.876 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 -13.349 6.322 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.063 3.937 4 C -0.168 4.168 5 C -0.097 4.097 6 C -0.099 4.099 7 C -0.120 4.120 8 C -0.159 4.159 9 C 0.160 3.840 10 H 0.034 0.966 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.129 4.129 14 N -0.507 5.507 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 O -0.296 6.296 20 C -0.057 4.057 21 C -0.100 4.100 22 C -0.224 4.224 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.779 -13.453 6.261 17.241 hybrid contribution -0.363 0.667 -0.734 1.057 sum -9.142 -12.785 5.526 16.661 Atomic orbital electron populations 1.22994 0.78840 1.03510 1.01281 1.86036 1.21037 1.27310 1.89242 1.18977 0.92378 0.83909 0.98410 1.20387 0.91237 0.98550 1.06617 1.20939 1.00105 0.90913 0.97785 1.20112 0.93466 0.96104 1.00195 1.20812 0.99713 0.91759 0.99743 1.22113 1.00396 1.00260 0.93149 1.19699 0.81084 0.89236 0.93942 0.96584 1.21278 1.39875 1.02919 0.92520 0.92039 1.25038 0.94333 0.96570 0.96974 1.69991 1.37621 1.12379 1.30688 0.86545 0.77828 0.78668 0.84936 1.19650 1.21009 1.20889 1.88040 1.33540 1.85033 1.23008 1.22478 0.98460 0.98678 0.86065 1.20884 0.94253 0.96886 0.97961 1.21167 0.99625 0.92441 1.09197 0.88577 0.92856 0.92768 0.85574 0.85240 0.91888 0.90859 0.92466 0.92461 0.93098 0.94443 0.96738 0.93028 0.85818 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.01 10.50 -19.44 -0.20 -4.22 16 3 C 0.11 1.48 6.69 -39.22 -0.26 1.21 16 4 C -0.15 -2.07 9.99 -39.44 -0.39 -2.46 16 5 C -0.08 -1.17 9.69 -39.61 -0.38 -1.55 16 6 C -0.10 -1.55 5.13 -104.60 -0.54 -2.09 16 7 C -0.08 -1.46 4.40 -27.88 -0.12 -1.58 16 8 C -0.12 -2.56 4.84 -26.73 -0.13 -2.69 16 9 C 0.22 5.52 2.12 -27.88 -0.06 5.46 16 10 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 11 C -0.53 -14.92 8.79 -34.44 -0.30 -15.22 16 12 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 13 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 14 N -0.87 -25.38 12.84 55.43 0.71 -24.66 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 O -0.38 -9.82 9.51 -35.23 -0.33 -10.15 16 20 C 0.04 0.89 10.34 101.05 1.04 1.93 16 21 C -0.08 -1.17 9.70 -39.60 -0.38 -1.56 16 22 C -0.21 -2.69 9.04 -39.43 -0.36 -3.04 16 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 26 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 29 H 0.07 1.30 6.21 -51.93 -0.32 0.97 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.01 0.27 5.90 -51.93 -0.31 -0.03 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.12 1.29 6.30 -52.48 -0.33 0.96 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -31.17 310.09 -6.67 -37.83 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.50 Total: -1.65 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.99 Total: -18.30 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.71 Total: -24.66 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.54 Total: -14.37 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.17 -6.67 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.475 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds