Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35904 * 117.00129 * 2 1 4 4 C 1.38727 * 120.05668 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94451 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05520 * 0.27241 * 5 4 3 7 7 C 1.50698 * 119.94300 * 179.69999 * 6 5 4 8 8 C 1.52998 * 109.46769 * 90.00232 * 7 6 5 9 9 C 1.53008 * 109.46953 * 179.86145 * 8 7 6 10 10 H 1.09002 * 109.46798 * 305.65736 * 9 8 7 11 11 C 1.50695 * 109.47134 * 185.65901 * 9 8 7 12 12 H 1.08002 * 120.00267 * 359.97438 * 11 9 8 13 13 C 1.37881 * 120.00345 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99289 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00222 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47067 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47188 * 119.99842 * 15 13 11 18 18 H 1.48497 * 109.46878 * 239.99798 * 15 13 11 19 19 O 1.42897 * 109.47156 * 65.65825 * 9 8 7 20 20 C 1.42900 * 114.00066 * 259.20696 * 19 9 8 21 21 C 1.38268 * 120.11131 * 359.44923 * 6 5 4 22 22 C 1.38146 * 120.05164 * 0.55010 * 21 6 5 23 23 H 1.08993 * 109.47216 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46687 * 299.99893 * 1 2 3 25 25 H 1.09004 * 109.46628 * 59.99835 * 1 2 3 26 26 H 1.08007 * 120.02368 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.96972 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47106 * 210.00367 * 7 6 5 29 29 H 1.09000 * 109.47359 * 330.00336 * 7 6 5 30 30 H 1.09001 * 109.47299 * 299.85300 * 8 7 6 31 31 H 1.08994 * 109.47275 * 59.86358 * 8 7 6 32 32 H 0.97001 * 119.99284 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47570 * 294.60143 * 20 19 9 34 34 H 1.09006 * 109.46949 * 54.59470 * 20 19 9 35 35 H 1.08997 * 109.47667 * 174.59016 * 20 19 9 36 36 H 1.07989 * 119.97305 * 180.25469 * 21 6 5 37 37 H 1.08007 * 120.02556 * 179.69960 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6758 0.0068 7 6 3.9862 5.0184 0.0142 8 6 4.2173 5.4809 -1.4258 9 6 4.9088 6.8458 -1.4183 10 1 4.3279 7.5441 -0.8158 11 6 5.0115 7.3647 -2.8294 12 1 4.6227 6.7794 -3.6496 13 6 5.6026 8.5862 -3.0736 14 7 6.0764 9.2986 -2.0748 15 14 5.7304 9.2290 -4.8228 16 1 5.1271 8.2450 -5.7571 17 1 5.0069 10.5215 -4.9294 18 1 7.1594 9.4313 -5.1726 19 8 6.2189 6.7129 -0.8632 20 6 6.3177 7.1310 0.4997 21 6 1.9211 3.6048 0.0015 22 6 1.2916 2.3751 0.0010 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0209 0.3798 -0.0005 27 1 5.1346 2.5749 0.0000 28 1 3.3584 5.7433 0.5323 29 1 4.9443 4.9352 0.5272 30 1 4.8472 4.7574 -1.9432 31 1 3.2594 5.5618 -1.9396 32 1 6.4919 10.1582 -2.2465 33 1 6.1337 8.2033 0.5652 34 1 5.5782 6.5983 1.0977 35 1 7.3165 6.9101 0.8760 36 1 1.3343 4.5113 0.0026 37 1 0.2130 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = -90.617040 kcal Electronic energy + Delta-G solvation = -17869.328483 eV Core-core repulsion = 14996.970362 eV Total energy + Delta-G solvation = -2872.358121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05853 -39.12410 -38.21016 -34.63715 -34.29201 -32.00940 -31.07990 -28.88848 -27.72947 -26.78404 -24.91809 -23.54081 -22.32230 -21.55220 -19.07098 -18.64829 -17.32792 -16.81752 -16.81244 -16.59761 -16.22444 -15.55827 -15.33372 -15.19590 -14.67185 -14.43171 -14.08829 -13.92356 -13.70187 -13.26099 -12.93357 -12.84006 -12.76676 -12.52413 -12.31164 -12.15207 -11.84857 -11.67309 -11.60086 -11.34344 -11.19417 -10.56995 -9.92794 -9.73977 -8.97135 -8.14488 -6.32032 0.41605 0.47878 1.40523 1.42643 1.54559 2.41114 2.42045 2.81477 3.06864 3.85281 3.89244 3.94987 4.01825 4.23949 4.39521 4.41471 4.49008 4.52550 4.56840 4.64981 4.72555 4.74909 4.85321 4.89230 5.00271 5.05082 5.10410 5.20149 5.30523 5.34649 5.44514 5.52716 5.78680 5.80930 5.85984 6.24664 6.48341 6.74108 7.18060 7.42091 8.93268 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034128 B = 0.004318 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.253826 B = 6482.191822 C = 6935.507584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.106 3.894 4 C -0.159 4.159 5 C -0.086 4.086 6 C -0.120 4.120 7 C -0.069 4.069 8 C -0.108 4.108 9 C 0.215 3.785 10 H -0.006 1.006 11 C -0.557 4.557 12 H 0.058 0.942 13 C 0.024 3.976 14 N -0.900 5.900 15 Si 0.960 3.040 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.281 1.281 19 O -0.403 6.403 20 C 0.042 3.958 21 C -0.087 4.087 22 C -0.204 4.204 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.261 0.739 33 H 0.014 0.986 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 -14.564 6.206 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.061 3.939 4 C -0.177 4.177 5 C -0.104 4.104 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.146 4.146 9 C 0.159 3.841 10 H 0.012 0.988 11 C -0.594 4.594 12 H 0.076 0.924 13 C -0.178 4.178 14 N -0.537 5.537 15 Si 0.785 3.215 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.207 1.207 19 O -0.323 6.323 20 C -0.055 4.055 21 C -0.105 4.105 22 C -0.223 4.223 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.918 -14.680 6.152 18.754 hybrid contribution -0.073 0.963 -0.648 1.163 sum -9.992 -13.716 5.504 17.840 Atomic orbital electron populations 1.23328 0.76614 1.05516 1.02150 1.86030 1.23358 1.26647 1.88901 1.19157 0.92565 0.84686 0.97457 1.20584 0.91888 0.98709 1.06528 1.21032 1.00432 0.91100 0.97836 1.19976 0.94210 0.95192 1.02602 1.20577 0.99927 0.93121 0.97026 1.21878 0.99444 0.97530 0.95730 1.19638 0.81013 0.91000 0.92425 0.98806 1.21704 1.40224 1.03564 0.93902 0.92362 1.25869 0.93939 0.96800 1.01143 1.70106 1.38240 1.12718 1.32670 0.85497 0.77790 0.78273 0.79952 1.19011 1.20031 1.20678 1.87947 1.33809 1.85241 1.25268 1.22571 1.00725 0.97542 0.84663 1.21061 0.93837 0.97988 0.97656 1.21419 1.01023 0.91636 1.08216 0.86194 0.91737 0.92049 0.84195 0.84879 0.91557 0.91211 0.93491 0.92464 0.92965 0.96709 0.94032 0.90725 0.84847 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.55 10.50 -92.47 -0.97 -8.52 16 3 C 0.11 2.70 6.69 22.50 0.15 2.85 16 4 C -0.16 -4.18 9.99 22.36 0.22 -3.95 16 5 C -0.09 -2.46 9.69 22.25 0.22 -2.25 16 6 C -0.12 -3.66 5.13 -19.85 -0.10 -3.76 16 7 C -0.07 -2.41 4.40 29.85 0.13 -2.28 16 8 C -0.11 -4.60 4.84 30.60 0.15 -4.45 16 9 C 0.22 11.21 2.12 29.85 0.06 11.27 16 10 H -0.01 -0.32 7.70 -2.39 -0.02 -0.34 16 11 C -0.56 -31.94 8.79 25.60 0.23 -31.71 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 13 C 0.02 1.39 5.40 84.65 0.46 1.85 16 14 N -0.90 -53.27 12.84 21.45 0.28 -53.00 16 15 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 O -0.40 -21.27 9.51 -148.98 -1.42 -22.68 16 20 C 0.04 1.83 10.34 113.37 1.17 3.00 16 21 C -0.09 -2.38 9.70 22.25 0.22 -2.16 16 22 C -0.20 -4.88 9.04 22.37 0.20 -4.68 16 23 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 25 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 26 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 27 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.07 2.22 8.09 -2.39 -0.02 2.20 16 29 H 0.07 2.44 6.21 -2.39 -0.01 2.42 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 32 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.04 1.56 5.90 -2.38 -0.01 1.55 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.13 3.27 8.06 -2.92 -0.02 3.25 16 37 H 0.15 2.67 6.30 -2.91 -0.02 2.65 16 Total: -1.00 -66.78 310.09 5.17 -61.61 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.04 Total: 11.07 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 4.21 Total: -34.91 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.28 Total: -53.00 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -2.39 Total: -31.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.78 5.17 -61.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.008 kcal (2) G-P(sol) polarization free energy of solvation -66.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds