Wall clock time and date at job start Mon Mar 30 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99475 * 2 1 4 4 C 1.38739 * 120.05618 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94346 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05924 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94378 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47155 * 90.00433 * 7 6 5 9 9 C 1.53000 * 109.47356 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.46926 * 54.99911 * 9 8 7 11 11 C 1.50698 * 109.46903 * 174.99732 * 9 8 7 12 12 H 1.07995 * 120.00234 * 85.54349 * 11 9 8 13 13 C 1.37885 * 120.00146 * 265.53620 * 11 9 8 14 14 N 1.31514 * 120.00198 * 178.61017 * 13 11 9 15 15 Si 1.86799 * 119.99624 * 358.61317 * 13 11 9 16 16 H 1.48506 * 109.47050 * 267.34770 * 15 13 11 17 17 H 1.48498 * 109.47345 * 27.35215 * 15 13 11 18 18 H 1.48497 * 109.47246 * 147.35367 * 15 13 11 19 19 O 1.42897 * 109.47036 * 294.99381 * 9 8 7 20 20 C 1.42896 * 113.99879 * 152.33913 * 19 9 8 21 21 C 1.38264 * 120.11264 * 0.25338 * 6 5 4 22 22 C 1.38149 * 120.05409 * 359.44893 * 21 6 5 23 23 H 1.08998 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47405 * 299.99609 * 1 2 3 25 25 H 1.08997 * 109.47373 * 60.00331 * 1 2 3 26 26 H 1.07999 * 120.02445 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.96895 * 179.97438 * 5 4 3 28 28 H 1.08996 * 109.47313 * 329.99829 * 7 6 5 29 29 H 1.09001 * 109.46832 * 209.99958 * 7 6 5 30 30 H 1.08996 * 109.47503 * 59.99513 * 8 7 6 31 31 H 1.09007 * 109.46997 * 299.99963 * 8 7 6 32 32 H 0.96992 * 120.00017 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.47060 * 64.37211 * 20 19 9 34 34 H 1.09004 * 109.47669 * 184.37236 * 20 19 9 35 35 H 1.09009 * 109.47652 * 304.37687 * 20 19 9 36 36 H 1.07998 * 119.97398 * 179.70612 * 21 6 5 37 37 H 1.07996 * 120.03058 * 180.25606 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0559 2.5172 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2166 5.4748 -1.4393 9 6 4.9105 6.8383 -1.4382 10 1 5.8257 6.7797 -0.8492 11 6 5.2482 7.2312 -2.8533 12 1 4.5122 7.7314 -3.4651 13 6 6.4970 6.9523 -3.3670 14 7 6.7827 7.2705 -4.6106 15 14 7.7831 6.1221 -2.2963 16 1 8.6206 7.1562 -1.6369 17 1 7.1086 5.2976 -1.2617 18 1 8.6427 5.2528 -3.1392 19 8 4.0386 7.8161 -0.8676 20 6 4.7180 8.9103 -0.2487 21 6 1.9209 3.6049 0.0080 22 6 1.2913 2.3752 0.0012 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.0209 0.3802 -0.0005 27 1 5.1344 2.5753 0.0000 28 1 4.9439 4.9379 0.5161 29 1 3.3579 5.7459 0.5177 30 1 3.2585 5.5556 -1.9526 31 1 4.8444 4.7476 -1.9543 32 1 7.6610 7.0739 -4.9720 33 1 5.2722 9.4678 -1.0039 34 1 3.9903 9.5678 0.2269 35 1 5.4101 8.5302 0.5028 36 1 1.3340 4.5115 0.0140 37 1 0.2128 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261341010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:55 Heat of formation + Delta-G solvation = -72.239808 kcal Electronic energy + Delta-G solvation = -17939.127463 eV Core-core repulsion = 15067.566239 eV Total energy + Delta-G solvation = -2871.561224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04821 -37.84286 -36.89720 -33.42342 -32.41781 -30.95986 -29.79661 -27.77643 -26.36664 -25.57275 -23.14288 -22.47564 -20.79977 -20.00156 -18.10441 -17.16796 -16.20717 -15.77301 -15.62714 -15.20092 -14.41315 -14.27540 -13.95109 -13.80236 -13.43340 -13.31088 -12.79805 -12.64545 -12.42351 -12.03089 -11.93076 -11.52813 -11.26337 -11.04035 -10.80747 -10.74559 -10.50938 -10.17725 -10.03478 -9.69488 -9.43134 -8.86035 -8.64602 -8.26545 -7.83586 -6.15178 -4.16796 1.48221 1.58729 3.20093 3.25930 3.29944 3.30281 3.91172 4.32532 4.82773 4.94851 4.96235 5.00897 5.05634 5.11815 5.29553 5.32427 5.49603 5.56924 5.74713 5.87584 6.04375 6.11392 6.18457 6.20667 6.30503 6.43501 6.50587 6.50761 6.51848 6.76049 6.89230 6.91185 7.06697 7.31358 7.44039 7.60480 8.21968 8.56503 8.98329 9.48626 10.98206 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.005159 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.800575 B = 5426.240184 C = 5910.500604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.109 3.891 4 C -0.149 4.149 5 C -0.082 4.082 6 C -0.100 4.100 7 C -0.084 4.084 8 C -0.097 4.097 9 C 0.184 3.816 10 H 0.018 0.982 11 C -0.535 4.535 12 H 0.079 0.921 13 C 0.074 3.926 14 N -0.893 5.893 15 Si 0.867 3.133 16 H -0.276 1.276 17 H -0.259 1.259 18 H -0.284 1.284 19 O -0.398 6.398 20 C 0.044 3.956 21 C -0.079 4.079 22 C -0.205 4.205 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.126 0.874 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 -10.616 11.485 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.064 3.936 4 C -0.168 4.168 5 C -0.100 4.100 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.135 4.135 9 C 0.127 3.873 10 H 0.036 0.964 11 C -0.573 4.573 12 H 0.097 0.903 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.694 3.306 16 H -0.202 1.202 17 H -0.184 1.184 18 H -0.210 1.210 19 O -0.318 6.318 20 C -0.053 4.053 21 C -0.097 4.097 22 C -0.224 4.224 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.144 0.856 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.746 -10.837 11.326 17.950 hybrid contribution 0.858 -0.241 0.325 0.949 sum -7.888 -11.078 11.652 17.908 Atomic orbital electron populations 1.22996 0.78817 1.03517 1.01306 1.86035 1.21062 1.27302 1.89227 1.18975 0.92351 0.83929 0.98337 1.20372 0.91277 0.98494 1.06634 1.20923 0.99975 0.91049 0.98080 1.20075 0.93586 0.95931 1.00382 1.20759 0.99541 0.92091 0.99700 1.21813 1.01568 0.97004 0.93131 1.20237 0.88304 0.85210 0.93505 0.96384 1.21501 0.99673 1.39279 0.96857 0.90324 1.25029 0.97997 0.94886 0.94913 1.69903 1.22024 1.47120 1.14080 0.86995 0.82088 0.80393 0.81148 1.20170 1.18358 1.20964 1.87712 1.35126 1.33880 1.75037 1.22441 0.96626 0.90362 0.95908 1.20890 0.94191 0.96934 0.97645 1.21180 0.99658 0.92427 1.09115 0.88581 0.92863 0.92710 0.85587 0.85466 0.92050 0.90774 0.91881 0.91625 0.92510 0.94072 0.91758 0.95931 0.85641 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.11 10.50 -19.43 -0.20 -4.31 16 3 C 0.11 1.52 6.69 -39.21 -0.26 1.26 16 4 C -0.15 -2.12 9.99 -39.43 -0.39 -2.51 16 5 C -0.08 -1.24 9.69 -39.61 -0.38 -1.62 16 6 C -0.10 -1.59 5.13 -104.60 -0.54 -2.13 16 7 C -0.08 -1.46 5.24 -27.88 -0.15 -1.61 16 8 C -0.10 -2.07 4.85 -26.73 -0.13 -2.19 16 9 C 0.18 4.40 1.66 -27.88 -0.05 4.36 16 10 H 0.02 0.44 4.93 -51.93 -0.26 0.18 16 11 C -0.54 -15.19 9.16 -34.44 -0.32 -15.50 16 12 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 15 Si 0.87 20.86 26.93 -169.99 -4.58 16.29 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.26 -5.82 6.62 56.52 0.37 -5.45 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 O -0.40 -9.07 9.88 -35.23 -0.35 -9.42 16 20 C 0.04 0.84 10.84 101.05 1.10 1.94 16 21 C -0.08 -1.15 9.69 -39.60 -0.38 -1.53 16 22 C -0.21 -2.73 9.04 -39.43 -0.36 -3.09 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 26 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 28 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.07 1.26 7.76 -51.93 -0.40 0.86 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.44 7.96 -51.93 -0.41 1.03 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.39 7.99 -51.92 -0.41 -0.02 16 36 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.12 1.33 6.30 -52.49 -0.33 0.99 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -31.43 310.81 -6.21 -37.65 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.58 Total: 0.83 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.96 Total: -19.38 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.55 Total: -13.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.58 Total: 16.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.43 -6.21 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.592 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds