Wall clock time and date at job start Mon Mar 30 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99475 * 2 1 4 4 C 1.38739 * 120.05618 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94346 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05924 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94378 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47155 * 90.00433 * 7 6 5 9 9 C 1.53000 * 109.47356 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.46926 * 54.99911 * 9 8 7 11 11 C 1.50698 * 109.46903 * 174.99732 * 9 8 7 12 12 H 1.07995 * 120.00234 * 85.54349 * 11 9 8 13 13 C 1.37885 * 120.00146 * 265.53620 * 11 9 8 14 14 N 1.31514 * 120.00198 * 178.61017 * 13 11 9 15 15 Si 1.86799 * 119.99624 * 358.61317 * 13 11 9 16 16 H 1.48506 * 109.47050 * 267.34770 * 15 13 11 17 17 H 1.48498 * 109.47345 * 27.35215 * 15 13 11 18 18 H 1.48497 * 109.47246 * 147.35367 * 15 13 11 19 19 O 1.42897 * 109.47036 * 294.99381 * 9 8 7 20 20 C 1.42896 * 113.99879 * 152.33913 * 19 9 8 21 21 C 1.38264 * 120.11264 * 0.25338 * 6 5 4 22 22 C 1.38149 * 120.05409 * 359.44893 * 21 6 5 23 23 H 1.08998 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47405 * 299.99609 * 1 2 3 25 25 H 1.08997 * 109.47373 * 60.00331 * 1 2 3 26 26 H 1.07999 * 120.02445 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.96895 * 179.97438 * 5 4 3 28 28 H 1.08996 * 109.47313 * 329.99829 * 7 6 5 29 29 H 1.09001 * 109.46832 * 209.99958 * 7 6 5 30 30 H 1.08996 * 109.47503 * 59.99513 * 8 7 6 31 31 H 1.09007 * 109.46997 * 299.99963 * 8 7 6 32 32 H 0.96992 * 120.00017 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.47060 * 64.37211 * 20 19 9 34 34 H 1.09004 * 109.47669 * 184.37236 * 20 19 9 35 35 H 1.09009 * 109.47652 * 304.37687 * 20 19 9 36 36 H 1.07998 * 119.97398 * 179.70612 * 21 6 5 37 37 H 1.07996 * 120.03058 * 180.25606 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0559 2.5172 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2166 5.4748 -1.4393 9 6 4.9105 6.8383 -1.4382 10 1 5.8257 6.7797 -0.8492 11 6 5.2482 7.2312 -2.8533 12 1 4.5122 7.7314 -3.4651 13 6 6.4970 6.9523 -3.3670 14 7 6.7827 7.2705 -4.6106 15 14 7.7831 6.1221 -2.2963 16 1 8.6206 7.1562 -1.6369 17 1 7.1086 5.2976 -1.2617 18 1 8.6427 5.2528 -3.1392 19 8 4.0386 7.8161 -0.8676 20 6 4.7180 8.9103 -0.2487 21 6 1.9209 3.6049 0.0080 22 6 1.2913 2.3752 0.0012 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.0209 0.3802 -0.0005 27 1 5.1344 2.5753 0.0000 28 1 4.9439 4.9379 0.5161 29 1 3.3579 5.7459 0.5177 30 1 3.2585 5.5556 -1.9526 31 1 4.8444 4.7476 -1.9543 32 1 7.6610 7.0739 -4.9720 33 1 5.2722 9.4678 -1.0039 34 1 3.9903 9.5678 0.2269 35 1 5.4101 8.5302 0.5028 36 1 1.3340 4.5115 0.0140 37 1 0.2128 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:55 Heat of formation + Delta-G solvation = -91.878194 kcal Electronic energy + Delta-G solvation = -17939.979047 eV Core-core repulsion = 15067.566239 eV Total energy + Delta-G solvation = -2872.412809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05296 -39.17495 -38.37284 -35.09240 -34.31433 -32.01859 -31.29232 -28.89602 -27.70151 -27.21391 -24.69012 -23.54021 -22.28293 -21.53134 -19.29306 -19.03585 -17.58322 -17.10427 -16.61520 -16.51549 -16.16993 -15.66521 -15.23889 -15.12321 -14.91613 -14.57509 -14.43241 -14.04552 -13.82858 -13.37877 -13.02367 -12.94595 -12.81004 -12.67374 -12.09756 -11.99644 -11.90305 -11.75934 -11.59245 -11.56294 -11.29283 -10.76796 -10.09923 -9.92557 -8.97818 -8.35369 -6.43715 0.41717 0.48168 1.31271 1.33316 1.44816 2.29181 2.41142 2.80694 2.97688 3.32862 3.87688 3.96381 4.03753 4.24199 4.36225 4.41046 4.45332 4.50006 4.58818 4.63091 4.67455 4.71003 4.75543 4.79424 4.89042 4.94719 5.09778 5.20979 5.26725 5.35521 5.43361 5.46119 5.64249 5.80984 5.86272 6.12213 6.48200 6.55911 6.77136 7.28109 8.82169 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.005159 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.800575 B = 5426.240184 C = 5910.500604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.106 3.894 4 C -0.160 4.160 5 C -0.089 4.089 6 C -0.122 4.122 7 C -0.069 4.069 8 C -0.092 4.092 9 C 0.189 3.811 10 H 0.028 0.972 11 C -0.548 4.548 12 H 0.025 0.975 13 C 0.017 3.983 14 N -0.944 5.944 15 Si 0.933 3.067 16 H -0.264 1.264 17 H -0.231 1.231 18 H -0.280 1.280 19 O -0.411 6.411 20 C 0.035 3.965 21 C -0.086 4.086 22 C -0.205 4.205 23 H 0.120 0.880 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.269 0.731 33 H 0.019 0.981 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.134 0.866 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -12.232 13.907 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.061 3.939 4 C -0.178 4.178 5 C -0.107 4.107 6 C -0.122 4.122 7 C -0.107 4.107 8 C -0.130 4.130 9 C 0.132 3.868 10 H 0.046 0.954 11 C -0.586 4.586 12 H 0.043 0.957 13 C -0.181 4.181 14 N -0.584 5.584 15 Si 0.755 3.245 16 H -0.189 1.189 17 H -0.153 1.153 18 H -0.206 1.206 19 O -0.331 6.331 20 C -0.061 4.061 21 C -0.104 4.104 22 C -0.224 4.224 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.151 0.849 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.991 -12.448 13.768 20.624 hybrid contribution 0.771 0.293 -0.488 0.958 sum -8.220 -12.155 13.280 19.791 Atomic orbital electron populations 1.23324 0.76627 1.05507 1.02146 1.86027 1.23358 1.26687 1.88912 1.19167 0.92595 0.84665 0.97478 1.20593 0.91882 0.98774 1.06576 1.21065 1.00509 0.91126 0.98000 1.20008 0.94264 0.95345 1.02559 1.20545 1.00348 0.93131 0.96652 1.21640 1.00215 0.95296 0.95856 1.20132 0.89304 0.86593 0.90755 0.95402 1.21753 0.98905 1.39047 0.98869 0.95693 1.25959 1.00402 0.95482 0.96253 1.70063 1.22962 1.48936 1.16418 0.85934 0.78892 0.79826 0.79824 1.18895 1.15325 1.20595 1.87687 1.35574 1.34615 1.75177 1.22704 0.97971 0.89718 0.95710 1.21071 0.93948 0.97914 0.97431 1.21431 1.01023 0.91704 1.08238 0.86198 0.91665 0.92141 0.84214 0.84657 0.91192 0.90397 0.93337 0.92616 0.92247 0.96230 0.88227 0.93675 0.84861 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.75 10.50 -92.44 -0.97 -8.72 16 3 C 0.11 2.74 6.69 22.51 0.15 2.89 16 4 C -0.16 -4.24 9.99 22.37 0.22 -4.02 16 5 C -0.09 -2.53 9.69 22.25 0.22 -2.31 16 6 C -0.12 -3.69 5.13 -19.85 -0.10 -3.79 16 7 C -0.07 -2.31 5.24 29.85 0.16 -2.15 16 8 C -0.09 -3.87 4.85 30.59 0.15 -3.72 16 9 C 0.19 8.98 1.66 29.85 0.05 9.03 16 10 H 0.03 1.28 4.93 -2.39 -0.01 1.27 16 11 C -0.55 -32.12 9.16 25.60 0.23 -31.88 16 12 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 13 C 0.02 0.99 5.47 84.66 0.46 1.45 16 14 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 15 Si 0.93 42.47 26.93 68.60 1.85 44.31 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.23 -9.36 6.62 99.48 0.66 -8.70 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 O -0.41 -18.50 9.88 -148.98 -1.47 -19.97 16 20 C 0.04 1.30 10.84 113.37 1.23 2.53 16 21 C -0.09 -2.36 9.69 22.25 0.22 -2.14 16 22 C -0.21 -5.02 9.04 22.37 0.20 -4.81 16 23 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 25 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 26 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 29 H 0.08 2.51 7.76 -2.39 -0.02 2.49 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.41 7.96 -2.38 -0.02 2.39 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.04 1.46 7.99 -2.38 -0.02 1.44 16 36 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.15 2.75 6.30 -2.91 -0.02 2.73 16 Total: -1.00 -69.81 310.81 4.99 -64.82 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.99 Total: 15.99 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 4.30 Total: -37.55 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.30 Total: -58.88 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -2.44 Total: -28.69 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.85 Total: 44.31 kcal Total: -69.81 4.99 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.063 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds