Wall clock time and date at job start Mon Mar 30 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99702 * 2 1 4 4 C 1.52999 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47284 * 59.99453 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72491 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00322 * 5 3 2 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 C 1.53001 * 109.46829 * 299.99690 * 3 2 1 14 14 C 1.52994 * 109.47367 * 300.00116 * 13 3 2 15 15 C 1.50698 * 109.47366 * 179.97438 * 14 13 3 16 16 C 1.38161 * 120.03093 * 265.00036 * 15 14 13 17 17 C 1.38244 * 120.05968 * 179.97438 * 16 15 14 18 18 C 1.38298 * 120.10929 * 0.02562 * 17 16 15 19 19 C 1.38124 * 120.05352 * 0.02562 * 18 17 16 20 20 C 1.38714 * 120.02597 * 84.72017 * 15 14 13 21 21 O 1.35899 * 120.05735 * 0.02562 * 20 15 14 22 22 H 1.09008 * 109.47359 * 60.00367 * 1 2 3 23 23 H 1.08995 * 109.46829 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47444 * 300.00170 * 1 2 3 25 25 H 1.08997 * 109.47084 * 300.00513 * 4 3 2 26 26 H 1.09007 * 109.46899 * 60.00161 * 4 3 2 27 27 H 1.08993 * 109.47037 * 179.97438 * 4 3 2 28 28 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47065 * 60.00515 * 13 3 2 30 30 H 1.09006 * 109.46890 * 179.97438 * 13 3 2 31 31 H 1.08998 * 109.47353 * 300.00222 * 14 13 3 32 32 H 1.09001 * 109.47005 * 60.00203 * 14 13 3 33 33 H 1.08001 * 119.97065 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.94794 * 180.02562 * 17 16 15 35 35 H 1.08002 * 119.96817 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.02305 * 179.97438 * 19 18 17 37 37 H 0.96693 * 114.00471 * 89.99257 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 1.5654 2.0535 1.2304 6 1 1.0197 2.9800 1.1313 7 6 1.8603 1.5576 2.4827 8 7 1.4769 2.2130 3.5565 9 14 2.8044 -0.0452 2.6541 10 1 4.2610 0.2405 2.6968 11 1 2.3969 -0.7279 3.9083 12 1 2.5057 -0.9222 1.4936 13 6 1.5587 2.0647 -1.2493 14 6 2.0102 1.3055 -2.4985 15 6 1.5650 2.0529 -3.7290 16 6 0.3803 1.7132 -4.3534 17 6 -0.0290 2.3988 -5.4820 18 6 0.7462 3.4257 -5.9891 19 6 1.9319 3.7684 -5.3691 20 6 2.3414 3.0863 -4.2323 21 8 3.5046 3.4258 -3.6169 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.8567 0.6440 0.8908 26 1 3.8574 0.6438 -0.8892 27 1 3.9787 2.1806 0.0002 28 1 1.6840 1.8640 4.4375 29 1 0.4721 2.1508 -1.2493 30 1 2.0017 3.0607 -1.2491 31 1 3.0968 1.2194 -2.4985 32 1 1.5669 0.3097 -2.4984 33 1 -0.2267 0.9114 -3.9596 34 1 -0.9556 2.1321 -5.9684 35 1 0.4241 3.9601 -6.8707 36 1 2.5371 4.5701 -5.7658 37 1 4.2780 2.9483 -3.9468 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:21 Heat of formation + Delta-G solvation = -85.026391 kcal Electronic energy + Delta-G solvation = -18867.020480 eV Core-core repulsion = 15994.904787 eV Total energy + Delta-G solvation = -2872.115692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88027 -39.53889 -37.47542 -35.04057 -34.58952 -32.52098 -30.80266 -29.29077 -27.64634 -26.70159 -25.20475 -23.45207 -22.15500 -20.70273 -19.20692 -18.91995 -17.35998 -16.92467 -16.77457 -16.43345 -16.02353 -15.83560 -15.34432 -14.81388 -14.76884 -14.41368 -13.96287 -13.78144 -13.58310 -13.24590 -12.97326 -12.85744 -12.70084 -12.41230 -12.22075 -12.09165 -11.95780 -11.73797 -11.39213 -11.18033 -10.79644 -10.68221 -9.86771 -9.66103 -9.35716 -8.33547 -6.44576 0.38040 0.44353 1.34853 1.43249 1.69449 2.41000 2.77388 3.00633 3.41171 3.45893 3.88955 3.98308 4.20013 4.27706 4.41659 4.49469 4.55377 4.63508 4.72068 4.76557 4.80662 4.84370 5.02018 5.03524 5.10503 5.13561 5.14594 5.18737 5.45538 5.51234 5.59724 5.62214 5.63457 5.74451 6.01770 6.08828 6.64107 6.84734 6.93823 7.32849 8.81580 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.006168 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.047985 B = 4538.517138 C = 4789.307924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.401 6.401 3 C 0.200 3.800 4 C -0.132 4.132 5 C -0.540 4.540 6 H 0.027 0.973 7 C 0.031 3.969 8 N -0.943 5.943 9 Si 0.934 3.066 10 H -0.280 1.280 11 H -0.313 1.313 12 H -0.200 1.200 13 C -0.100 4.100 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.155 4.155 20 C 0.091 3.909 21 O -0.508 6.508 22 H 0.040 0.960 23 H 0.088 0.912 24 H 0.018 0.982 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 -2.841 -20.339 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.321 6.321 3 C 0.162 3.838 4 C -0.188 4.188 5 C -0.578 4.578 6 H 0.045 0.955 7 C -0.168 4.168 8 N -0.583 5.583 9 Si 0.761 3.239 10 H -0.207 1.207 11 H -0.242 1.242 12 H -0.122 1.122 13 C -0.138 4.138 14 C -0.100 4.100 15 C -0.120 4.120 16 C -0.134 4.134 17 C -0.148 4.148 18 C -0.131 4.131 19 C -0.173 4.173 20 C 0.047 3.953 21 O -0.320 6.320 22 H 0.059 0.941 23 H 0.107 0.893 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.699 -2.615 -19.873 20.056 hybrid contribution 0.365 -0.119 0.865 0.947 sum 1.064 -2.734 -19.008 19.233 Atomic orbital electron populations 1.22447 0.82537 1.01241 0.99407 1.87895 1.19417 1.30209 1.94630 1.19403 0.91349 0.81086 0.92009 1.21949 0.94940 1.01442 1.00497 1.21587 1.36535 1.08202 0.91456 0.95455 1.25789 0.95487 1.00329 0.95199 1.70087 1.48133 1.41391 0.98706 0.86245 0.77778 0.81864 0.78005 1.20707 1.24185 1.12229 1.21702 0.99608 0.98558 0.93959 1.20396 1.01571 0.97926 0.90085 1.20496 0.96916 0.96814 0.97779 1.21227 0.95285 1.00694 0.96177 1.21473 1.00827 0.96293 0.96240 1.21359 0.93836 0.97332 1.00563 1.21653 0.99170 1.01382 0.95125 1.18583 0.89081 0.94823 0.92856 1.84838 1.16536 1.67064 1.63600 0.94104 0.89334 0.96358 0.94901 0.90855 0.91844 0.92672 0.93812 0.93565 0.90477 0.90788 0.85124 0.83408 0.83019 0.84190 0.73896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 10.31 113.37 1.17 2.77 16 2 O -0.40 -17.82 6.50 -148.98 -0.97 -18.79 16 3 C 0.20 9.22 0.38 -11.54 0.00 9.22 16 4 C -0.13 -5.55 8.01 71.98 0.58 -4.97 16 5 C -0.54 -31.06 7.37 25.60 0.19 -30.87 16 6 H 0.03 1.76 7.99 -2.92 -0.02 1.74 16 7 C 0.03 1.82 5.45 84.66 0.46 2.28 16 8 N -0.94 -60.20 13.96 21.45 0.30 -59.90 16 9 Si 0.93 46.38 23.92 68.60 1.64 48.02 16 10 H -0.28 -13.41 6.86 99.48 0.68 -12.72 16 11 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 12 H -0.20 -9.29 5.29 99.48 0.53 -8.76 16 13 C -0.10 -4.09 3.81 30.59 0.12 -3.97 16 14 C -0.06 -2.01 4.56 29.85 0.14 -1.87 16 15 C -0.12 -3.43 5.15 -19.77 -0.10 -3.53 16 16 C -0.12 -2.88 9.68 22.25 0.22 -2.66 16 17 C -0.13 -2.63 10.04 22.29 0.22 -2.41 16 18 C -0.11 -2.16 10.04 22.26 0.22 -1.94 16 19 C -0.15 -3.46 9.99 22.37 0.22 -3.24 16 20 C 0.09 2.47 6.68 22.51 0.15 2.62 16 21 O -0.51 -13.50 12.65 -92.41 -1.17 -14.66 16 22 H 0.04 1.47 6.42 -2.38 -0.02 1.46 16 23 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.02 0.83 7.15 -2.39 -0.02 0.82 16 25 H 0.03 1.46 3.28 -2.39 -0.01 1.45 16 26 H 0.07 2.56 6.43 -2.38 -0.02 2.55 16 27 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.04 1.84 6.54 -2.39 -0.02 1.83 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.08 2.33 5.99 -2.39 -0.01 2.32 16 32 H 0.07 2.32 7.59 -2.39 -0.02 2.30 16 33 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.40 6.65 9.06 -74.06 -0.67 5.98 16 Total: -1.00 -71.42 293.18 3.58 -67.84 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.19 Total: 16.07 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.58 Total: -38.58 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.30 Total: -59.90 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -2.14 Total: -33.46 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.64 Total: 48.02 kcal Total: -71.42 3.58 -67.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.186 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds