Wall clock time and date at job start Mon Mar 30 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00039 * 2 1 4 4 C 1.38758 * 120.05545 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94325 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.06008 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10785 * 359.97438 * 6 5 4 8 8 C 1.38167 * 120.05671 * 359.68217 * 7 6 5 9 9 C 1.50703 * 120.02939 * 180.29356 * 8 7 6 10 10 C 1.52995 * 109.47088 * 265.32143 * 9 8 7 11 11 C 1.53004 * 109.46908 * 179.84350 * 10 9 8 12 12 H 1.08997 * 109.47120 * 305.61677 * 11 10 9 13 13 C 1.50699 * 109.46852 * 185.61312 * 11 10 9 14 14 H 1.07993 * 120.00255 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99799 * 179.97438 * 13 11 10 16 16 N 1.31522 * 120.00377 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00211 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47118 * 60.00275 * 17 15 13 19 19 H 1.48502 * 109.47376 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46916 * 300.00270 * 17 15 13 21 21 O 1.42903 * 109.47288 * 65.61633 * 11 10 9 22 22 C 1.42900 * 114.00029 * 259.25612 * 21 11 10 23 23 H 1.09006 * 109.46902 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47331 * 60.00053 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99511 * 1 2 3 26 26 H 1.07998 * 120.02824 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97162 * 179.97438 * 5 4 3 28 28 H 1.07998 * 119.94722 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.97159 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47211 * 25.32148 * 9 8 7 31 31 H 1.09000 * 109.46762 * 145.31712 * 9 8 7 32 32 H 1.09003 * 109.46929 * 299.83974 * 10 9 8 33 33 H 1.08997 * 109.47477 * 59.84260 * 10 9 8 34 34 H 0.96998 * 120.00381 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.47158 * 174.59053 * 22 21 11 36 36 H 1.09000 * 109.47007 * 294.59126 * 22 21 11 37 37 H 1.09004 * 109.46764 * 54.59022 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4311 1.2848 0.0066 9 6 4.2537 0.0221 0.0127 10 6 4.4328 -0.4768 -1.4225 11 6 5.2713 -1.7566 -1.4166 12 1 6.2084 -1.5746 -0.8905 13 6 5.5640 -2.1718 -2.8353 14 1 5.1899 -1.5817 -3.6588 15 6 6.3105 -3.3045 -3.0820 16 7 6.7666 -4.0229 -2.0792 17 14 6.6740 -3.8189 -4.8407 18 1 7.4253 -2.7377 -5.5274 19 1 7.4877 -5.0611 -4.8350 20 1 5.3975 -4.0672 -5.5576 21 8 4.5482 -2.7968 -0.7554 22 6 4.9617 -3.0256 0.5932 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2128 2.3204 0.0005 27 1 1.3340 4.5114 0.0011 28 1 3.7922 4.6381 0.0005 29 1 5.1344 2.5752 -0.0008 30 1 5.2306 0.2270 0.4507 31 1 3.7442 -0.7405 0.6017 32 1 3.4561 -0.6844 -1.8595 33 1 4.9398 0.2870 -2.0121 34 1 7.2913 -4.8200 -2.2528 35 1 4.3033 -3.7612 1.0552 36 1 5.9857 -3.3990 0.6008 37 1 4.9114 -2.0911 1.1521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261342472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:58 Heat of formation + Delta-G solvation = -69.519660 kcal Electronic energy + Delta-G solvation = -18427.369076 eV Core-core repulsion = 15555.925806 eV Total energy + Delta-G solvation = -2871.443270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05147 -37.30388 -36.64455 -33.38448 -32.36409 -30.10493 -29.75020 -27.38402 -26.74811 -24.80057 -23.50412 -21.95050 -21.00559 -19.91684 -17.81804 -16.51791 -16.09449 -15.59647 -15.41575 -14.92352 -14.58061 -14.29610 -13.84002 -13.58645 -13.31364 -12.71945 -12.64067 -12.48422 -11.91676 -11.82070 -11.53098 -11.39876 -10.99320 -10.89518 -10.79617 -10.59376 -10.50073 -10.26161 -9.67552 -9.58033 -9.10744 -8.64677 -8.38158 -7.94740 -7.64074 -5.96093 -4.05138 1.49154 1.61476 3.36570 3.40442 3.43731 3.48745 3.93128 4.47704 4.88992 4.95924 5.15310 5.19931 5.21741 5.22379 5.47888 5.54448 5.58385 5.80208 5.85489 5.95491 6.08872 6.21954 6.40719 6.46215 6.54055 6.60392 6.66172 6.71073 6.91585 6.95519 7.04041 7.04383 7.14513 7.54976 7.61499 7.97220 8.39163 8.93067 9.21565 9.64098 11.12511 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.005497 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.862700 B = 5092.875642 C = 5322.806643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.096 4.096 6 C -0.158 4.158 7 C -0.085 4.085 8 C -0.096 4.096 9 C -0.078 4.078 10 C -0.118 4.118 11 C 0.218 3.782 12 H 0.015 0.985 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.076 3.924 16 N -0.871 5.871 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.375 6.375 22 C 0.042 3.958 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 11.842 6.287 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.115 4.115 6 C -0.177 4.177 7 C -0.103 4.103 8 C -0.097 4.097 9 C -0.115 4.115 10 C -0.156 4.156 11 C 0.162 3.838 12 H 0.033 0.967 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.129 4.129 16 N -0.508 5.508 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 O -0.294 6.294 22 C -0.055 4.055 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -9.271 11.379 6.244 15.950 hybrid contribution 0.077 -0.013 -0.769 0.773 sum -9.194 11.366 5.475 15.610 Atomic orbital electron populations 1.23021 0.79127 1.03866 1.00685 1.86224 1.20606 1.26415 1.88251 1.18923 0.91979 0.84230 0.96594 1.21171 0.99664 0.92508 1.09647 1.20808 0.94665 0.96637 0.99343 1.20987 0.93886 0.98182 1.04601 1.20950 0.99979 0.91062 0.98287 1.19596 0.90769 0.96622 1.02712 1.20699 0.97668 0.93025 1.00092 1.22058 1.01421 0.99021 0.93090 1.19662 0.88800 0.82733 0.92575 0.96700 1.21201 1.32923 1.10885 0.91532 0.92210 1.25026 0.94853 0.96059 0.96914 1.69972 1.34424 1.15772 1.30598 0.86673 0.78330 0.77848 0.85138 1.20212 1.21278 1.20146 1.88045 1.60974 1.57777 1.22590 1.22454 0.99289 0.97364 0.86405 0.88277 0.92960 0.93173 0.85909 0.86386 0.86307 0.85457 0.92034 0.90409 0.92404 0.92734 0.93029 0.93135 0.94562 0.96792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.30 -4.99 9.63 -19.42 -0.19 -5.18 16 3 C 0.13 2.07 6.66 -39.21 -0.26 1.81 16 4 C -0.21 -2.82 9.04 -39.43 -0.36 -3.17 16 5 C -0.10 -1.18 10.04 -39.61 -0.40 -1.57 16 6 C -0.16 -2.00 10.04 -39.56 -0.40 -2.40 16 7 C -0.08 -1.24 9.68 -39.60 -0.38 -1.62 16 8 C -0.10 -1.63 5.15 -104.47 -0.54 -2.17 16 9 C -0.08 -1.48 4.12 -27.88 -0.11 -1.59 16 10 C -0.12 -2.64 4.84 -26.73 -0.13 -2.77 16 11 C 0.22 5.78 2.12 -27.88 -0.06 5.72 16 12 H 0.02 0.42 7.70 -51.93 -0.40 0.02 16 13 C -0.53 -15.25 8.79 -34.44 -0.30 -15.56 16 14 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 16 N -0.87 -25.83 12.84 55.43 0.71 -25.12 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 O -0.38 -10.15 9.51 -35.23 -0.33 -10.48 16 22 C 0.04 0.97 10.34 101.05 1.04 2.01 16 23 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 31 H 0.08 1.56 5.82 -51.93 -0.30 1.26 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.01 0.28 5.89 -51.93 -0.31 -0.03 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -32.16 308.89 -6.65 -38.81 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.48 Total: -1.59 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.00 Total: -17.90 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.71 Total: -25.12 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.52 Total: -15.66 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.16 -6.65 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261342472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.706 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds