Wall clock time and date at job start Mon Mar 30 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00039 * 2 1 4 4 C 1.38758 * 120.05545 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94325 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.06008 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10785 * 359.97438 * 6 5 4 8 8 C 1.38167 * 120.05671 * 359.68217 * 7 6 5 9 9 C 1.50703 * 120.02939 * 180.29356 * 8 7 6 10 10 C 1.52995 * 109.47088 * 265.32143 * 9 8 7 11 11 C 1.53004 * 109.46908 * 179.84350 * 10 9 8 12 12 H 1.08997 * 109.47120 * 305.61677 * 11 10 9 13 13 C 1.50699 * 109.46852 * 185.61312 * 11 10 9 14 14 H 1.07993 * 120.00255 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99799 * 179.97438 * 13 11 10 16 16 N 1.31522 * 120.00377 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00211 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47118 * 60.00275 * 17 15 13 19 19 H 1.48502 * 109.47376 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46916 * 300.00270 * 17 15 13 21 21 O 1.42903 * 109.47288 * 65.61633 * 11 10 9 22 22 C 1.42900 * 114.00029 * 259.25612 * 21 11 10 23 23 H 1.09006 * 109.46902 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47331 * 60.00053 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99511 * 1 2 3 26 26 H 1.07998 * 120.02824 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97162 * 179.97438 * 5 4 3 28 28 H 1.07998 * 119.94722 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.97159 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47211 * 25.32148 * 9 8 7 31 31 H 1.09000 * 109.46762 * 145.31712 * 9 8 7 32 32 H 1.09003 * 109.46929 * 299.83974 * 10 9 8 33 33 H 1.08997 * 109.47477 * 59.84260 * 10 9 8 34 34 H 0.96998 * 120.00381 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.47158 * 174.59053 * 22 21 11 36 36 H 1.09000 * 109.47007 * 294.59126 * 22 21 11 37 37 H 1.09004 * 109.46764 * 54.59022 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4311 1.2848 0.0066 9 6 4.2537 0.0221 0.0127 10 6 4.4328 -0.4768 -1.4225 11 6 5.2713 -1.7566 -1.4166 12 1 6.2084 -1.5746 -0.8905 13 6 5.5640 -2.1718 -2.8353 14 1 5.1899 -1.5817 -3.6588 15 6 6.3105 -3.3045 -3.0820 16 7 6.7666 -4.0229 -2.0792 17 14 6.6740 -3.8189 -4.8407 18 1 7.4253 -2.7377 -5.5274 19 1 7.4877 -5.0611 -4.8350 20 1 5.3975 -4.0672 -5.5576 21 8 4.5482 -2.7968 -0.7554 22 6 4.9617 -3.0256 0.5932 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2128 2.3204 0.0005 27 1 1.3340 4.5114 0.0011 28 1 3.7922 4.6381 0.0005 29 1 5.1344 2.5752 -0.0008 30 1 5.2306 0.2270 0.4507 31 1 3.7442 -0.7405 0.6017 32 1 3.4561 -0.6844 -1.8595 33 1 4.9398 0.2870 -2.0121 34 1 7.2913 -4.8200 -2.2528 35 1 4.3033 -3.7612 1.0552 36 1 5.9857 -3.3990 0.6008 37 1 4.9114 -2.0911 1.1521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261342472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:57 Heat of formation + Delta-G solvation = -89.091833 kcal Electronic energy + Delta-G solvation = -18428.217789 eV Core-core repulsion = 15555.925806 eV Total energy + Delta-G solvation = -2872.291983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14511 -38.79393 -38.19567 -34.89751 -34.51285 -31.54402 -30.94314 -28.83962 -27.97475 -26.80366 -25.18033 -22.98410 -22.47196 -21.65730 -18.95974 -18.54579 -17.35359 -16.86929 -16.78064 -16.54645 -16.34410 -15.64466 -15.32497 -15.22989 -14.74418 -14.21550 -13.91467 -13.85606 -13.74684 -13.23749 -12.90675 -12.80614 -12.69353 -12.42155 -12.40710 -12.03447 -11.93465 -11.86359 -11.48946 -11.42328 -11.21488 -10.57028 -9.83722 -9.62888 -8.99822 -8.14276 -6.32564 0.42879 0.55838 1.40696 1.44160 1.51507 2.41895 2.49930 2.86910 3.06476 3.85643 3.86382 3.94145 4.16327 4.28685 4.35797 4.40329 4.48178 4.53219 4.58344 4.63533 4.72888 4.74099 4.82113 4.88322 5.00459 5.01181 5.11898 5.18178 5.30239 5.47109 5.52400 5.59463 5.69129 5.78745 5.96859 6.23998 6.57443 6.72773 7.17546 7.41237 8.93443 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.005497 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.862700 B = 5092.875642 C = 5322.806643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.157 4.157 7 C -0.093 4.093 8 C -0.131 4.131 9 C -0.063 4.063 10 C -0.101 4.101 11 C 0.217 3.783 12 H -0.007 1.007 13 C -0.559 4.559 14 H 0.057 0.943 15 C 0.025 3.975 16 N -0.900 5.900 17 Si 0.962 3.038 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.273 1.273 21 O -0.402 6.402 22 C 0.045 3.955 23 H 0.106 0.894 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.016 0.984 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 13.715 6.037 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.231 4.231 5 C -0.107 4.107 6 C -0.175 4.175 7 C -0.111 4.111 8 C -0.132 4.132 9 C -0.100 4.100 10 C -0.139 4.139 11 C 0.162 3.838 12 H 0.011 0.989 13 C -0.596 4.596 14 H 0.076 0.924 15 C -0.177 4.177 16 N -0.538 5.538 17 Si 0.786 3.214 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.199 1.199 21 O -0.321 6.321 22 C -0.052 4.052 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.172 0.828 28 H 0.167 0.833 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.375 13.264 6.002 17.877 hybrid contribution 0.360 -0.547 -0.632 0.910 sum -10.014 12.717 5.370 17.054 Atomic orbital electron populations 1.23284 0.76927 1.05006 1.02204 1.86164 1.23135 1.27348 1.88551 1.19164 0.92025 0.85093 0.97366 1.21495 1.00914 0.91942 1.08714 1.21298 0.94853 0.97516 0.96987 1.21360 0.94317 0.98613 1.03250 1.21149 1.00717 0.91065 0.98130 1.19520 0.91343 0.96196 1.06106 1.20406 0.98230 0.94142 0.97234 1.21789 0.99374 0.97162 0.95594 1.19608 0.88607 0.84215 0.91408 0.98939 1.21618 1.33628 1.11555 0.92777 0.92444 1.25888 0.94461 0.95942 1.01422 1.70097 1.34855 1.16074 1.32736 0.85580 0.78258 0.77823 0.79715 1.18960 1.20489 1.19861 1.87952 1.61214 1.58286 1.24667 1.22528 0.98581 0.99081 0.85013 0.87520 0.91829 0.91097 0.83431 0.82755 0.83302 0.84750 0.91707 0.91983 0.94204 0.92627 0.92890 0.90880 0.96505 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.34 -11.20 9.63 -92.40 -0.89 -12.09 16 3 C 0.11 3.44 6.66 22.51 0.15 3.58 16 4 C -0.21 -5.11 9.04 22.37 0.20 -4.90 16 5 C -0.09 -1.83 10.04 22.25 0.22 -1.60 16 6 C -0.16 -3.49 10.04 22.28 0.22 -3.26 16 7 C -0.09 -2.59 9.68 22.25 0.22 -2.37 16 8 C -0.13 -4.42 5.15 -19.77 -0.10 -4.52 16 9 C -0.06 -2.46 4.12 29.85 0.12 -2.34 16 10 C -0.10 -4.69 4.84 30.59 0.15 -4.55 16 11 C 0.22 11.94 2.12 29.85 0.06 12.00 16 12 H -0.01 -0.41 7.70 -2.39 -0.02 -0.43 16 13 C -0.56 -33.11 8.79 25.60 0.23 -32.89 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.02 1.44 5.40 84.65 0.46 1.90 16 16 N -0.90 -54.48 12.84 21.45 0.28 -54.21 16 17 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 O -0.40 -22.42 9.51 -148.98 -1.42 -23.83 16 22 C 0.04 2.09 10.34 113.37 1.17 3.26 16 23 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 25 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 26 H 0.15 2.70 6.30 -2.91 -0.02 2.68 16 27 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 31 H 0.06 2.58 5.82 -2.39 -0.01 2.56 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 1.50 5.89 -2.38 -0.01 1.49 16 Total: -1.00 -70.85 308.89 5.25 -65.60 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.04 Total: 11.46 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 4.21 Total: -34.14 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.28 Total: -54.21 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -2.31 Total: -35.92 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.85 5.25 -65.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261342472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.487 kcal (2) G-P(sol) polarization free energy of solvation -70.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds