Wall clock time and date at job start Mon Mar 30 2020 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99666 * 2 1 4 4 C 1.38752 * 120.05701 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.94521 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05792 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10602 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05932 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02606 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46977 * 264.94704 * 9 8 7 11 11 C 1.52999 * 109.46993 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47052 * 55.00372 * 11 10 9 13 13 C 1.50699 * 109.47069 * 175.00589 * 11 10 9 14 14 H 1.07996 * 120.00051 * 85.00048 * 13 11 10 15 15 C 1.37878 * 119.99540 * 265.00032 * 13 11 10 16 16 N 1.31507 * 120.00405 * 5.00072 * 15 13 11 17 17 Si 1.86807 * 119.99721 * 185.00134 * 15 13 11 18 18 H 1.48504 * 109.47064 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47201 * 119.99854 * 17 15 13 20 20 H 1.48499 * 109.46896 * 239.99853 * 17 15 13 21 21 O 1.42901 * 109.47018 * 295.00548 * 11 10 9 22 22 C 1.42907 * 113.99763 * 154.99671 * 21 11 10 23 23 H 1.09001 * 109.46697 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46946 * 299.98929 * 1 2 3 25 25 H 1.08995 * 109.47470 * 59.99422 * 1 2 3 26 26 H 1.08000 * 120.02449 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.97703 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.94770 * 179.74489 * 6 5 4 29 29 H 1.08008 * 119.96937 * 179.97438 * 7 6 5 30 30 H 1.08991 * 109.47387 * 24.95073 * 9 8 7 31 31 H 1.08997 * 109.46961 * 144.95490 * 9 8 7 32 32 H 1.08991 * 109.47363 * 300.00383 * 10 9 8 33 33 H 1.08997 * 109.46633 * 60.00585 * 10 9 8 34 34 H 0.97000 * 120.00474 * 180.02562 * 16 15 13 35 35 H 1.08989 * 109.47237 * 294.99892 * 22 21 11 36 36 H 1.09000 * 109.46736 * 55.00284 * 22 21 11 37 37 H 1.09000 * 109.47015 * 174.99433 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 4.0558 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0016 9 6 4.2538 0.0223 -0.0016 10 6 4.4263 -0.4740 -1.4386 11 6 5.2610 -1.7562 -1.4386 12 1 4.7997 -2.4900 -0.7778 13 6 5.3281 -2.3120 -2.8377 14 1 6.0752 -1.9487 -3.5278 15 6 4.4356 -3.2842 -3.2367 16 7 3.4649 -3.6563 -2.4312 17 14 4.6053 -4.0731 -4.9215 18 1 5.7698 -3.4830 -5.6294 19 1 4.8097 -5.5356 -4.7650 20 1 3.3710 -3.8273 -5.7097 21 8 6.5820 -1.4646 -0.9780 22 6 7.2592 -2.5859 -0.4069 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2127 2.3203 0.0005 27 1 1.3338 4.5114 0.0000 28 1 3.7921 4.6382 -0.0051 29 1 5.1343 2.5754 -0.0019 30 1 5.2326 0.2264 0.4323 31 1 3.7470 -0.7415 0.5881 32 1 3.4475 -0.6781 -1.8725 33 1 4.9331 0.2899 -2.0283 34 1 2.8372 -4.3406 -2.7118 35 1 6.7427 -2.8988 0.5004 36 1 7.2675 -3.4082 -1.1223 37 1 8.2841 -2.3060 -0.1634 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261342477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:00 Heat of formation + Delta-G solvation = -73.968770 kcal Electronic energy + Delta-G solvation = -18393.873629 eV Core-core repulsion = 15522.237431 eV Total energy + Delta-G solvation = -2871.636198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90845 -37.16877 -36.68934 -33.56689 -32.50990 -29.98407 -29.60284 -27.18578 -26.44559 -25.30261 -23.36341 -21.82148 -20.97517 -19.82031 -17.67366 -16.57146 -15.96929 -15.45042 -15.35528 -15.25630 -14.23542 -14.18152 -13.82397 -13.59758 -13.50206 -12.76679 -12.56682 -12.40470 -12.00609 -11.67460 -11.43305 -11.24361 -10.96740 -10.88565 -10.81745 -10.62854 -10.43660 -10.08227 -9.78285 -9.65576 -9.15250 -8.59635 -8.39960 -8.06458 -7.71616 -6.02528 -4.10495 1.61665 1.73858 3.28391 3.36470 3.42406 3.63123 4.05671 4.42113 5.00779 5.08542 5.18801 5.26589 5.30656 5.34949 5.42220 5.60915 5.69109 5.73550 5.93455 6.12219 6.24925 6.35834 6.41303 6.44979 6.59791 6.68063 6.68945 6.78649 6.82322 7.11270 7.14639 7.27410 7.49524 7.74854 7.78380 7.88108 8.37061 8.52238 9.14855 9.58974 11.02520 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.006461 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.891654 B = 4332.602095 C = 5023.167670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.300 6.300 3 C 0.128 3.872 4 C -0.212 4.212 5 C -0.098 4.098 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.094 4.094 9 C -0.075 4.075 10 C -0.082 4.082 11 C 0.201 3.799 12 H 0.044 0.956 13 C -0.534 4.534 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 O -0.412 6.412 22 C 0.050 3.950 23 H 0.099 0.901 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.020 0.980 36 H 0.038 0.962 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 9.773 6.375 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.212 6.212 3 C 0.083 3.917 4 C -0.231 4.231 5 C -0.116 4.116 6 C -0.178 4.178 7 C -0.102 4.102 8 C -0.095 4.095 9 C -0.112 4.112 10 C -0.120 4.120 11 C 0.145 3.855 12 H 0.062 0.938 13 C -0.572 4.572 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 O -0.332 6.332 22 C -0.047 4.047 23 H 0.117 0.883 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.540 9.629 6.366 12.404 hybrid contribution -0.509 -0.612 -0.977 1.260 sum -5.049 9.017 5.389 11.655 Atomic orbital electron populations 1.23003 0.79218 1.03849 1.00506 1.86247 1.20533 1.26301 1.88157 1.18955 0.92052 0.84253 0.96479 1.21159 0.99613 0.92538 1.09783 1.20782 0.94653 0.96571 0.99616 1.20972 0.93871 0.98131 1.04843 1.20944 0.99958 0.91043 0.98299 1.19630 0.90726 0.96773 1.02350 1.20623 0.97661 0.92668 1.00258 1.21563 1.00298 0.97544 0.92554 1.19955 0.78349 0.92714 0.94451 0.93790 1.21639 1.16141 1.21023 0.98403 0.92249 1.25014 0.95038 0.96237 0.97390 1.69960 1.15436 1.30887 1.36243 0.86562 0.78130 0.79141 0.84341 1.19613 1.20918 1.20977 1.87668 1.31803 1.33948 1.79750 1.22312 0.95264 0.91049 0.96108 0.88295 0.93312 0.93030 0.86000 0.86511 0.86430 0.85472 0.91452 0.91423 0.91138 0.93676 0.92871 0.96159 0.94322 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.46 9.63 -19.45 -0.19 -5.64 16 3 C 0.13 2.25 6.66 -39.22 -0.26 1.99 16 4 C -0.21 -3.09 9.04 -39.44 -0.36 -3.45 16 5 C -0.10 -1.30 10.04 -39.61 -0.40 -1.70 16 6 C -0.16 -2.19 10.04 -39.56 -0.40 -2.58 16 7 C -0.08 -1.33 9.68 -39.61 -0.38 -1.71 16 8 C -0.09 -1.72 5.15 -104.47 -0.54 -2.26 16 9 C -0.07 -1.53 4.96 -27.88 -0.14 -1.67 16 10 C -0.08 -1.95 4.89 -26.73 -0.13 -2.08 16 11 C 0.20 5.30 2.18 -27.88 -0.06 5.23 16 12 H 0.04 1.26 7.13 -51.93 -0.37 0.89 16 13 C -0.53 -15.23 8.40 -34.44 -0.29 -15.52 16 14 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 15 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 16 N -0.89 -25.71 12.84 55.43 0.71 -25.00 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 O -0.41 -10.11 9.89 -35.23 -0.35 -10.46 16 22 C 0.05 1.05 10.80 101.05 1.09 2.14 16 23 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 25 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.07 1.32 7.73 -51.93 -0.40 0.92 16 31 H 0.07 1.45 7.69 -51.93 -0.40 1.05 16 32 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.40 8.14 -51.94 -0.42 -0.03 16 36 H 0.04 0.85 7.95 -51.93 -0.41 0.44 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -31.12 313.45 -6.73 -37.84 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.64 Total: 0.44 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.97 Total: -18.48 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.71 Total: -25.00 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.54 Total: -16.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.12 -6.73 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261342477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.126 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds