Wall clock time and date at job start Mon Mar 30 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00033 * 2 1 4 4 C 1.52997 * 109.47320 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47267 * 300.00258 * 3 2 1 6 6 H 1.07999 * 120.00136 * 125.05567 * 5 3 2 7 7 C 1.37878 * 119.99879 * 305.06086 * 5 3 2 8 8 N 1.31514 * 119.99967 * 6.05704 * 7 5 3 9 9 Si 1.86801 * 120.00019 * 186.06075 * 7 5 3 10 10 H 1.48498 * 109.47141 * 84.98563 * 9 7 5 11 11 H 1.48497 * 109.47043 * 204.98624 * 9 7 5 12 12 H 1.48505 * 109.46701 * 324.98710 * 9 7 5 13 13 C 1.53002 * 109.46938 * 60.00142 * 3 2 1 14 14 C 1.52993 * 109.47342 * 65.00319 * 13 3 2 15 15 C 1.50701 * 109.47552 * 179.97438 * 14 13 3 16 16 C 1.38261 * 119.94295 * 269.72443 * 15 14 13 17 17 C 1.38150 * 120.05609 * 179.72263 * 16 15 14 18 18 C 1.38730 * 119.93684 * 0.57083 * 17 16 15 19 19 O 1.35908 * 120.04915 * 179.68307 * 18 17 16 20 20 C 1.38732 * 119.89351 * 359.70472 * 18 17 16 21 21 C 1.38138 * 119.94271 * 359.97438 * 20 18 17 22 22 H 1.09005 * 109.47537 * 59.99634 * 1 2 3 23 23 H 1.09001 * 109.47354 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47456 * 300.00072 * 1 2 3 25 25 H 1.08997 * 109.47144 * 306.05813 * 4 3 2 26 26 H 1.09006 * 109.47248 * 66.06100 * 4 3 2 27 27 H 1.09000 * 109.47171 * 186.05850 * 4 3 2 28 28 H 0.97002 * 119.99859 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47377 * 304.99582 * 13 3 2 30 30 H 1.09006 * 109.47055 * 185.00079 * 13 3 2 31 31 H 1.09006 * 109.46849 * 299.99885 * 14 13 3 32 32 H 1.09001 * 109.47487 * 59.99330 * 14 13 3 33 33 H 1.08003 * 119.97406 * 359.97438 * 16 15 14 34 34 H 1.07995 * 120.02636 * 180.25075 * 17 16 15 35 35 H 0.96700 * 113.99461 * 270.01652 * 19 18 17 36 36 H 1.08004 * 120.02679 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.97334 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 1.5655 2.0534 -1.2305 6 1 1.0882 3.0173 -1.1335 7 6 1.7678 1.5070 -2.4801 8 7 2.2388 0.2844 -2.5948 9 14 1.3730 2.5031 -4.0102 10 1 2.5338 3.3629 -4.3543 11 1 1.0865 1.5827 -5.1398 12 1 0.1846 3.3557 -3.7527 13 6 1.5587 2.0647 1.2493 14 6 2.1160 1.3736 2.4953 15 6 1.6719 2.1217 3.7258 16 6 2.4538 3.1435 4.2320 17 6 2.0461 3.8347 5.3565 18 6 0.8568 3.4948 5.9848 19 8 0.4567 4.1690 7.0950 20 6 0.0768 2.4654 5.4782 21 6 0.4857 1.7818 4.3496 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.8502 0.5529 0.8299 26 1 3.8643 0.7405 -0.9402 27 1 3.9783 2.1747 0.1078 28 1 2.3815 -0.0999 -3.4739 29 1 0.4697 2.0738 1.2952 30 1 1.9291 3.0889 1.2056 31 1 1.7456 0.3493 2.5389 32 1 3.2050 1.3644 2.4494 33 1 3.3821 3.4042 3.7455 34 1 2.6552 4.6354 5.7491 35 1 0.7747 3.7855 7.9238 36 1 -0.8492 2.1987 5.9658 37 1 -0.1213 0.9806 3.9546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261351816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:24 Heat of formation + Delta-G solvation = -73.908280 kcal Electronic energy + Delta-G solvation = -18407.237606 eV Core-core repulsion = 15535.604032 eV Total energy + Delta-G solvation = -2871.633575 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67983 -37.66869 -36.63359 -32.96068 -32.39332 -30.88006 -30.03411 -27.14746 -25.64342 -24.65507 -23.41660 -22.67674 -21.00395 -18.81807 -18.38004 -16.67796 -15.74742 -15.64789 -15.22482 -14.66469 -14.39433 -13.90593 -13.65920 -13.40011 -13.30111 -12.84596 -12.49331 -12.19132 -11.67800 -11.63056 -11.37003 -11.00645 -10.97855 -10.71768 -10.57630 -10.43424 -10.30950 -10.24183 -9.92117 -9.53465 -8.88443 -8.68147 -8.47694 -8.30157 -7.70662 -5.93372 -4.11791 1.35802 1.45939 3.29092 3.36292 3.38741 3.73864 4.24341 4.41540 4.97559 5.04544 5.17780 5.23504 5.53199 5.57918 5.62287 5.85466 5.89545 6.11063 6.15936 6.31918 6.46068 6.49321 6.50537 6.57051 6.67753 6.73067 6.88464 6.93921 6.97779 7.02460 7.11512 7.18869 7.44785 7.63587 7.79371 8.00290 8.28234 8.82403 9.16193 9.60777 11.06292 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036325 B = 0.004917 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.641539 B = 5693.223663 C = 5812.033357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.236 3.764 4 C -0.119 4.119 5 C -0.557 4.557 6 H 0.054 0.946 7 C 0.082 3.918 8 N -0.851 5.851 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.128 4.128 14 C -0.083 4.083 15 C -0.070 4.070 16 C -0.105 4.105 17 C -0.143 4.143 18 C 0.082 3.918 19 O -0.502 6.502 20 C -0.143 4.143 21 C -0.105 4.105 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.010 0.990 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.258 0.742 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.384 0.616 36 H 0.123 0.877 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 2.565 14.352 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.289 6.289 3 C 0.198 3.802 4 C -0.177 4.177 5 C -0.594 4.594 6 H 0.072 0.928 7 C -0.124 4.124 8 N -0.486 5.486 9 Si 0.708 3.292 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.166 4.166 14 C -0.120 4.120 15 C -0.070 4.070 16 C -0.123 4.123 17 C -0.161 4.161 18 C 0.038 3.962 19 O -0.312 6.312 20 C -0.161 4.161 21 C -0.123 4.123 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.042 0.958 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.871 2.612 13.813 14.084 hybrid contribution -0.295 0.610 -0.559 0.878 sum -1.166 3.222 13.254 13.689 Atomic orbital electron populations 1.22156 0.84954 0.98516 0.98608 1.87843 1.16593 1.30031 1.94421 1.18994 0.90583 0.80847 0.89807 1.21586 0.96204 0.98591 1.01291 1.21463 1.41792 1.05060 0.91129 0.92812 1.24970 0.94427 0.94401 0.98614 1.70107 1.42675 1.12769 1.23056 0.86823 0.78862 0.80304 0.83235 1.20503 1.21264 1.20018 1.22207 1.00179 0.99527 0.94674 1.20767 1.01227 0.98905 0.91081 1.20320 0.94205 0.95958 0.96507 1.21004 1.00130 0.95536 0.95663 1.21363 0.96060 1.00865 0.97857 1.18426 0.93797 0.93667 0.90289 1.84840 1.76541 1.54549 1.15223 1.21365 1.00422 0.95966 0.98382 1.21005 0.96317 0.99930 0.95026 0.94030 0.93397 0.97119 0.95801 0.90834 0.94262 0.93215 0.92790 0.92603 0.90816 0.90942 0.85593 0.85862 0.76135 0.85869 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 10.31 101.05 1.04 2.27 16 2 O -0.37 -9.30 8.83 -35.23 -0.31 -9.62 16 3 C 0.24 5.67 0.41 -91.77 -0.04 5.64 16 4 C -0.12 -2.77 8.03 37.16 0.30 -2.47 16 5 C -0.56 -14.84 6.75 -34.44 -0.23 -15.07 16 6 H 0.05 1.44 7.75 -52.49 -0.41 1.04 16 7 C 0.08 2.21 5.10 -17.82 -0.09 2.12 16 8 N -0.85 -23.91 11.17 55.43 0.62 -23.29 16 9 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 C -0.13 -2.61 3.98 -26.73 -0.11 -2.72 16 14 C -0.08 -1.43 4.76 -27.89 -0.13 -1.56 16 15 C -0.07 -1.07 5.13 -104.60 -0.54 -1.61 16 16 C -0.11 -1.48 9.69 -39.61 -0.38 -1.86 16 17 C -0.14 -1.85 9.99 -39.43 -0.39 -2.25 16 18 C 0.08 1.07 6.70 -39.22 -0.26 0.81 16 19 O -0.50 -5.66 13.50 -19.45 -0.26 -5.93 16 20 C -0.14 -1.87 9.99 -39.44 -0.39 -2.26 16 21 C -0.10 -1.49 9.69 -39.61 -0.38 -1.88 16 22 H 0.04 1.00 7.10 -51.93 -0.37 0.64 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.01 0.21 6.31 -51.93 -0.33 -0.12 16 25 H 0.02 0.49 6.72 -51.93 -0.35 0.14 16 26 H 0.07 1.91 6.61 -51.93 -0.34 1.57 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.05 1.12 6.29 -51.93 -0.33 0.79 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.31 7.77 -51.93 -0.40 0.91 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.38 2.35 9.06 45.56 0.41 2.76 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -30.11 303.93 -6.55 -36.66 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.54 Total: 2.59 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.62 Total: -20.85 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.62 Total: -23.29 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.57 Total: -15.54 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.11 -6.55 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.248 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds