Wall clock time and date at job start Mon Mar 30 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00033 * 2 1 4 4 C 1.52997 * 109.47320 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47267 * 300.00258 * 3 2 1 6 6 H 1.07999 * 120.00136 * 125.05567 * 5 3 2 7 7 C 1.37878 * 119.99879 * 305.06086 * 5 3 2 8 8 N 1.31514 * 119.99967 * 6.05704 * 7 5 3 9 9 Si 1.86801 * 120.00019 * 186.06075 * 7 5 3 10 10 H 1.48498 * 109.47141 * 84.98563 * 9 7 5 11 11 H 1.48497 * 109.47043 * 204.98624 * 9 7 5 12 12 H 1.48505 * 109.46701 * 324.98710 * 9 7 5 13 13 C 1.53002 * 109.46938 * 60.00142 * 3 2 1 14 14 C 1.52993 * 109.47342 * 65.00319 * 13 3 2 15 15 C 1.50701 * 109.47552 * 179.97438 * 14 13 3 16 16 C 1.38261 * 119.94295 * 269.72443 * 15 14 13 17 17 C 1.38150 * 120.05609 * 179.72263 * 16 15 14 18 18 C 1.38730 * 119.93684 * 0.57083 * 17 16 15 19 19 O 1.35908 * 120.04915 * 179.68307 * 18 17 16 20 20 C 1.38732 * 119.89351 * 359.70472 * 18 17 16 21 21 C 1.38138 * 119.94271 * 359.97438 * 20 18 17 22 22 H 1.09005 * 109.47537 * 59.99634 * 1 2 3 23 23 H 1.09001 * 109.47354 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47456 * 300.00072 * 1 2 3 25 25 H 1.08997 * 109.47144 * 306.05813 * 4 3 2 26 26 H 1.09006 * 109.47248 * 66.06100 * 4 3 2 27 27 H 1.09000 * 109.47171 * 186.05850 * 4 3 2 28 28 H 0.97002 * 119.99859 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47377 * 304.99582 * 13 3 2 30 30 H 1.09006 * 109.47055 * 185.00079 * 13 3 2 31 31 H 1.09006 * 109.46849 * 299.99885 * 14 13 3 32 32 H 1.09001 * 109.47487 * 59.99330 * 14 13 3 33 33 H 1.08003 * 119.97406 * 359.97438 * 16 15 14 34 34 H 1.07995 * 120.02636 * 180.25075 * 17 16 15 35 35 H 0.96700 * 113.99461 * 270.01652 * 19 18 17 36 36 H 1.08004 * 120.02679 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.97334 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 1.5655 2.0534 -1.2305 6 1 1.0882 3.0173 -1.1335 7 6 1.7678 1.5070 -2.4801 8 7 2.2388 0.2844 -2.5948 9 14 1.3730 2.5031 -4.0102 10 1 2.5338 3.3629 -4.3543 11 1 1.0865 1.5827 -5.1398 12 1 0.1846 3.3557 -3.7527 13 6 1.5587 2.0647 1.2493 14 6 2.1160 1.3736 2.4953 15 6 1.6719 2.1217 3.7258 16 6 2.4538 3.1435 4.2320 17 6 2.0461 3.8347 5.3565 18 6 0.8568 3.4948 5.9848 19 8 0.4567 4.1690 7.0950 20 6 0.0768 2.4654 5.4782 21 6 0.4857 1.7818 4.3496 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.8502 0.5529 0.8299 26 1 3.8643 0.7405 -0.9402 27 1 3.9783 2.1747 0.1078 28 1 2.3815 -0.0999 -3.4739 29 1 0.4697 2.0738 1.2952 30 1 1.9291 3.0889 1.2056 31 1 1.7456 0.3493 2.5389 32 1 3.2050 1.3644 2.4494 33 1 3.3821 3.4042 3.7455 34 1 2.6552 4.6354 5.7491 35 1 0.7747 3.7855 7.9238 36 1 -0.8492 2.1987 5.9658 37 1 -0.1213 0.9806 3.9546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261351816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:24 Heat of formation + Delta-G solvation = -92.628267 kcal Electronic energy + Delta-G solvation = -18408.049366 eV Core-core repulsion = 15535.604032 eV Total energy + Delta-G solvation = -2872.445334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71625 -39.30779 -37.76655 -34.60758 -34.25346 -31.89426 -31.59822 -28.59981 -27.57593 -26.49705 -24.91167 -23.69523 -22.22101 -20.58286 -19.29863 -18.62153 -16.98800 -16.81495 -16.56407 -16.25519 -16.00282 -15.57526 -15.34949 -14.77360 -14.46745 -14.26632 -13.83533 -13.68588 -13.34729 -12.97544 -12.88640 -12.78239 -12.69245 -12.31446 -12.27746 -12.16659 -12.08899 -11.59750 -11.34913 -11.26991 -10.58257 -10.51322 -9.90191 -9.71422 -9.27903 -7.98318 -6.22566 0.32445 0.43977 1.39812 1.42329 1.49536 2.43513 2.72928 3.19248 3.35273 3.76715 3.95132 3.97678 4.12064 4.33814 4.50572 4.59537 4.67924 4.68871 4.78086 4.94592 4.97756 4.99233 5.06504 5.11933 5.22505 5.23759 5.29848 5.41728 5.48859 5.50019 5.56624 5.70500 5.79496 5.95868 6.11072 6.28195 6.80109 6.90127 7.24398 7.55512 8.99693 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036325 B = 0.004917 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.641539 B = 5693.223663 C = 5812.033357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.391 6.391 3 C 0.225 3.775 4 C -0.113 4.113 5 C -0.569 4.569 6 H 0.044 0.956 7 C 0.040 3.960 8 N -0.878 5.878 9 Si 0.935 3.065 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 C -0.116 4.116 14 C -0.069 4.069 15 C -0.091 4.091 16 C -0.110 4.110 17 C -0.147 4.147 18 C 0.087 3.913 19 O -0.509 6.509 20 C -0.148 4.148 21 C -0.112 4.112 22 H 0.015 0.985 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.256 0.744 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.408 0.592 36 H 0.142 0.858 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 3.448 15.897 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.310 6.310 3 C 0.187 3.813 4 C -0.170 4.170 5 C -0.607 4.607 6 H 0.063 0.937 7 C -0.163 4.163 8 N -0.514 5.514 9 Si 0.762 3.238 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 C -0.154 4.154 14 C -0.106 4.106 15 C -0.091 4.091 16 C -0.128 4.128 17 C -0.166 4.166 18 C 0.043 3.957 19 O -0.322 6.322 20 C -0.166 4.166 21 C -0.130 4.130 22 H 0.034 0.966 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.267 0.733 36 H 0.160 0.840 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.170 3.500 15.382 15.818 hybrid contribution -0.240 0.369 -0.932 1.030 sum -1.410 3.868 14.450 15.025 Atomic orbital electron populations 1.22203 0.83772 0.99713 0.98282 1.87795 1.18000 1.30648 1.94563 1.19124 0.90925 0.80686 0.90551 1.21499 0.95962 0.99324 1.00228 1.21770 1.41439 1.04857 0.92607 0.93732 1.25576 0.94466 0.95176 1.01084 1.70221 1.43798 1.13988 1.23384 0.85951 0.78669 0.79026 0.80199 1.19993 1.21125 1.19863 1.21982 0.99659 0.99036 0.94683 1.20531 1.01058 0.98316 0.90692 1.20169 0.95377 0.97056 0.96494 1.21146 1.00365 0.95240 0.96062 1.21583 0.96416 1.01166 0.97398 1.18551 0.93424 0.93032 0.90685 1.84775 1.76721 1.54723 1.15976 1.21568 1.01180 0.95881 0.97998 1.21118 0.96082 1.00306 0.95485 0.96638 0.91478 0.95044 0.94037 0.93999 0.93099 0.93434 0.93540 0.92919 0.91622 0.90768 0.84784 0.83888 0.73294 0.84038 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.54 10.31 113.37 1.17 3.71 16 2 O -0.39 -19.69 8.83 -148.98 -1.32 -21.01 16 3 C 0.23 10.85 0.41 -11.54 0.00 10.85 16 4 C -0.11 -5.22 8.03 71.98 0.58 -4.65 16 5 C -0.57 -30.55 6.75 25.60 0.17 -30.38 16 6 H 0.04 2.41 7.75 -2.91 -0.02 2.39 16 7 C 0.04 2.19 5.10 84.65 0.43 2.63 16 8 N -0.88 -50.00 11.17 21.45 0.24 -49.76 16 9 Si 0.94 43.13 29.54 68.60 2.03 45.16 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C -0.12 -4.67 3.98 30.59 0.12 -4.55 16 14 C -0.07 -2.32 4.76 29.85 0.14 -2.17 16 15 C -0.09 -2.67 5.13 -19.85 -0.10 -2.77 16 16 C -0.11 -2.90 9.69 22.25 0.22 -2.68 16 17 C -0.15 -3.45 9.99 22.37 0.22 -3.22 16 18 C 0.09 2.03 6.70 22.51 0.15 2.18 16 19 O -0.51 -9.84 13.50 -92.51 -1.25 -11.09 16 20 C -0.15 -3.52 9.99 22.36 0.22 -3.30 16 21 C -0.11 -3.02 9.69 22.25 0.22 -2.80 16 22 H 0.01 0.74 7.10 -2.38 -0.02 0.72 16 23 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.03 1.24 6.31 -2.39 -0.02 1.22 16 25 H 0.04 1.72 6.72 -2.39 -0.02 1.71 16 26 H 0.04 2.19 6.61 -2.38 -0.02 2.17 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 28 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.05 1.91 6.29 -2.39 -0.02 1.89 16 30 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.07 2.29 7.77 -2.38 -0.02 2.27 16 32 H 0.07 2.43 6.43 -2.39 -0.02 2.41 16 33 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.41 3.58 9.06 -74.06 -0.67 2.91 16 36 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -63.45 303.93 3.63 -59.82 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.39 Total: 14.05 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.54 Total: -37.16 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.24 Total: -49.76 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -2.57 Total: -32.10 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -63.45 3.63 -59.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.810 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds