Wall clock time and date at job start Mon Mar 30 2020 06:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00161 * 2 1 4 4 C 1.38758 * 120.05231 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94296 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05495 * 359.74775 * 5 4 3 7 7 C 1.38246 * 120.11072 * 0.50573 * 6 5 4 8 8 C 1.50706 * 119.97162 * 179.77082 * 7 6 5 9 9 C 1.53005 * 109.46858 * 269.72533 * 8 7 6 10 10 C 1.52999 * 109.47052 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47431 * 54.99308 * 10 9 8 12 12 C 1.50698 * 109.47224 * 174.99713 * 10 9 8 13 13 H 1.07998 * 119.99726 * 95.25249 * 12 10 9 14 14 C 1.37878 * 120.00227 * 275.25399 * 12 10 9 15 15 N 1.31505 * 119.99985 * 172.09360 * 14 12 10 16 16 Si 1.86803 * 119.99831 * 352.09763 * 14 12 10 17 17 H 1.48496 * 109.47293 * 84.74753 * 16 14 12 18 18 H 1.48492 * 109.46982 * 204.75033 * 16 14 12 19 19 H 1.48503 * 109.47041 * 324.74951 * 16 14 12 20 20 O 1.42907 * 109.46775 * 295.00061 * 10 9 8 21 21 C 1.42895 * 114.00031 * 154.55807 * 20 10 9 22 22 C 1.38165 * 120.05723 * 359.49560 * 7 6 5 23 23 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47699 * 300.00461 * 1 2 3 25 25 H 1.09002 * 109.47110 * 60.00271 * 1 2 3 26 26 H 1.08001 * 120.02837 * 359.95469 * 4 3 2 27 27 H 1.07996 * 119.97664 * 180.02562 * 5 4 3 28 28 H 1.08005 * 119.94542 * 180.27375 * 6 5 4 29 29 H 1.08994 * 109.46745 * 29.72128 * 8 7 6 30 30 H 1.08993 * 109.46771 * 149.72682 * 8 7 6 31 31 H 1.09004 * 109.46660 * 299.99665 * 9 8 7 32 32 H 1.08999 * 109.46958 * 59.99663 * 9 8 7 33 33 H 0.97001 * 119.99955 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46890 * 304.25089 * 21 20 10 35 35 H 1.08997 * 109.47666 * 64.24659 * 21 20 10 36 36 H 1.08997 * 109.47260 * 184.25639 * 21 20 10 37 37 H 1.07996 * 120.02800 * 180.23464 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0063 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5982 0.0011 9 6 6.0705 2.6260 -1.4413 10 6 7.5983 2.7077 -1.4408 11 1 8.0059 1.8863 -0.8515 12 6 8.1070 2.6114 -2.8561 13 1 8.3202 3.5103 -3.4155 14 6 8.3002 1.3759 -3.4367 15 7 8.5933 1.2890 -4.7157 16 14 8.1453 -0.1747 -2.4065 17 1 6.7191 -0.5826 -2.3372 18 1 8.9418 -1.2632 -3.0276 19 1 8.6518 0.0891 -1.0357 20 8 8.0085 3.9523 -0.8707 21 6 9.3168 3.9254 -0.2965 22 6 3.4311 1.2848 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2127 2.3203 0.0002 27 1 1.3340 4.5114 0.0019 28 1 3.7922 4.6381 0.0112 29 1 5.8754 3.5063 0.5152 30 1 5.9712 1.7289 0.5148 31 1 5.7557 1.7179 -1.9554 32 1 5.6599 3.4953 -1.9550 33 1 8.7289 0.4197 -5.1243 34 1 9.3710 3.1300 0.4468 35 1 10.0533 3.7424 -1.0788 36 1 9.5239 4.8832 0.1807 37 1 4.0206 0.3799 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261354186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:05 Heat of formation + Delta-G solvation = -71.717083 kcal Electronic energy + Delta-G solvation = -18052.114944 eV Core-core repulsion = 15180.576386 eV Total energy + Delta-G solvation = -2871.538557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04165 -37.79687 -36.90858 -33.60989 -32.48497 -30.60449 -29.82152 -27.45132 -26.80662 -25.58016 -23.26941 -22.35043 -20.78248 -20.05906 -17.67160 -17.04196 -16.20444 -15.86592 -15.75084 -15.54318 -14.51999 -14.26048 -14.06758 -13.65015 -13.36876 -13.04827 -12.79525 -12.62010 -12.41751 -11.98595 -11.92161 -11.46254 -11.30026 -11.06585 -10.88532 -10.79885 -10.47237 -10.24090 -10.11364 -9.63944 -9.41324 -8.72644 -8.56822 -8.18425 -8.02868 -6.14315 -4.14658 1.48943 1.60612 3.24118 3.27739 3.30520 3.32235 3.92214 4.34070 4.82262 4.93349 4.98777 5.01860 5.05276 5.13807 5.28168 5.34005 5.51531 5.56140 5.69360 5.90451 6.03769 6.12421 6.13870 6.23712 6.34468 6.42212 6.51070 6.52222 6.57829 6.76786 6.83371 6.93372 7.05295 7.30237 7.47398 7.61929 8.21157 8.56227 8.98684 9.49516 10.98963 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.006025 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.989698 B = 4646.107243 C = 5439.195749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.222 4.222 5 C -0.081 4.081 6 C -0.153 4.153 7 C -0.026 4.026 8 C -0.089 4.089 9 C -0.100 4.100 10 C 0.181 3.819 11 H 0.021 0.979 12 C -0.536 4.536 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.893 5.893 16 Si 0.864 3.136 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.264 1.264 20 O -0.396 6.396 21 C 0.044 3.956 22 C -0.153 4.153 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.265 0.735 34 H 0.023 0.977 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 0.230 11.554 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.241 4.241 5 C -0.099 4.099 6 C -0.171 4.171 7 C -0.026 4.026 8 C -0.126 4.126 9 C -0.138 4.138 10 C 0.124 3.876 11 H 0.039 0.961 12 C -0.574 4.574 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.691 3.309 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.190 1.190 20 O -0.316 6.316 21 C -0.053 4.053 22 C -0.171 4.171 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.486 0.059 11.385 17.649 hybrid contribution -0.174 -1.067 0.295 1.120 sum -13.660 -1.008 11.680 18.001 Atomic orbital electron populations 1.23000 0.78842 1.03591 1.01169 1.86070 1.21036 1.27298 1.88958 1.18997 0.92273 0.83942 0.96815 1.21107 0.99521 0.92518 1.10911 1.20880 0.94633 0.96703 0.97686 1.21023 0.93492 0.98398 1.04181 1.19952 0.96677 0.91856 0.94161 1.20862 0.88967 1.02754 1.00020 1.21882 0.96791 1.02310 0.92823 1.20295 0.90964 0.82618 0.93707 0.96119 1.21513 1.44256 0.94568 0.97048 0.90248 1.24964 0.94287 0.98692 0.94696 1.69913 1.47779 1.24912 1.10411 0.87023 0.79126 0.83595 0.81135 1.19407 1.21146 1.18956 1.87688 1.31032 1.36223 1.76627 1.22440 0.86846 0.99519 0.96475 1.20365 0.91144 0.98574 1.07040 0.88523 0.92895 0.92761 0.85998 0.86078 0.85681 0.90223 0.91773 0.91573 0.91527 0.92489 0.95838 0.94026 0.91746 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.49 10.50 -19.42 -0.20 -4.69 16 3 C 0.12 1.88 6.69 -39.21 -0.26 1.61 16 4 C -0.22 -2.90 9.04 -39.43 -0.36 -3.26 16 5 C -0.08 -1.05 10.04 -39.60 -0.40 -1.45 16 6 C -0.15 -2.26 9.70 -39.56 -0.38 -2.64 16 7 C -0.03 -0.43 5.13 -104.64 -0.54 -0.97 16 8 C -0.09 -1.58 5.24 -27.88 -0.15 -1.72 16 9 C -0.10 -2.16 4.75 -26.73 -0.13 -2.29 16 10 C 0.18 4.36 1.68 -27.88 -0.05 4.31 16 11 H 0.02 0.51 5.10 -51.93 -0.26 0.24 16 12 C -0.54 -15.27 9.06 -34.44 -0.31 -15.58 16 13 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 16 Si 0.86 21.19 26.48 -169.99 -4.50 16.69 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -6.19 6.36 56.52 0.36 -5.83 16 20 O -0.40 -9.03 9.89 -35.23 -0.35 -9.38 16 21 C 0.04 0.85 10.83 101.05 1.09 1.94 16 22 C -0.15 -2.52 9.64 -39.43 -0.38 -2.90 16 23 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.12 1.26 6.30 -52.49 -0.33 0.92 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.08 1.36 7.76 -51.93 -0.40 0.95 16 30 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.07 1.50 7.27 -51.93 -0.38 1.12 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.02 0.41 7.99 -51.93 -0.41 0.00 16 35 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 309.35 15.07 4.66 4.66 Total: -1.00 -31.64 309.35 -6.14 -37.79 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.56 Total: 0.96 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.96 Total: -19.59 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.55 Total: -14.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.50 Total: 16.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.64 -6.14 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.931 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds