Wall clock time and date at job start Mon Mar 30 2020 06:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00161 * 2 1 4 4 C 1.38758 * 120.05231 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94296 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05495 * 359.74775 * 5 4 3 7 7 C 1.38246 * 120.11072 * 0.50573 * 6 5 4 8 8 C 1.50706 * 119.97162 * 179.77082 * 7 6 5 9 9 C 1.53005 * 109.46858 * 269.72533 * 8 7 6 10 10 C 1.52999 * 109.47052 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47431 * 54.99308 * 10 9 8 12 12 C 1.50698 * 109.47224 * 174.99713 * 10 9 8 13 13 H 1.07998 * 119.99726 * 95.25249 * 12 10 9 14 14 C 1.37878 * 120.00227 * 275.25399 * 12 10 9 15 15 N 1.31505 * 119.99985 * 172.09360 * 14 12 10 16 16 Si 1.86803 * 119.99831 * 352.09763 * 14 12 10 17 17 H 1.48496 * 109.47293 * 84.74753 * 16 14 12 18 18 H 1.48492 * 109.46982 * 204.75033 * 16 14 12 19 19 H 1.48503 * 109.47041 * 324.74951 * 16 14 12 20 20 O 1.42907 * 109.46775 * 295.00061 * 10 9 8 21 21 C 1.42895 * 114.00031 * 154.55807 * 20 10 9 22 22 C 1.38165 * 120.05723 * 359.49560 * 7 6 5 23 23 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47699 * 300.00461 * 1 2 3 25 25 H 1.09002 * 109.47110 * 60.00271 * 1 2 3 26 26 H 1.08001 * 120.02837 * 359.95469 * 4 3 2 27 27 H 1.07996 * 119.97664 * 180.02562 * 5 4 3 28 28 H 1.08005 * 119.94542 * 180.27375 * 6 5 4 29 29 H 1.08994 * 109.46745 * 29.72128 * 8 7 6 30 30 H 1.08993 * 109.46771 * 149.72682 * 8 7 6 31 31 H 1.09004 * 109.46660 * 299.99665 * 9 8 7 32 32 H 1.08999 * 109.46958 * 59.99663 * 9 8 7 33 33 H 0.97001 * 119.99955 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46890 * 304.25089 * 21 20 10 35 35 H 1.08997 * 109.47666 * 64.24659 * 21 20 10 36 36 H 1.08997 * 109.47260 * 184.25639 * 21 20 10 37 37 H 1.07996 * 120.02800 * 180.23464 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0063 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5982 0.0011 9 6 6.0705 2.6260 -1.4413 10 6 7.5983 2.7077 -1.4408 11 1 8.0059 1.8863 -0.8515 12 6 8.1070 2.6114 -2.8561 13 1 8.3202 3.5103 -3.4155 14 6 8.3002 1.3759 -3.4367 15 7 8.5933 1.2890 -4.7157 16 14 8.1453 -0.1747 -2.4065 17 1 6.7191 -0.5826 -2.3372 18 1 8.9418 -1.2632 -3.0276 19 1 8.6518 0.0891 -1.0357 20 8 8.0085 3.9523 -0.8707 21 6 9.3168 3.9254 -0.2965 22 6 3.4311 1.2848 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2127 2.3203 0.0002 27 1 1.3340 4.5114 0.0019 28 1 3.7922 4.6381 0.0112 29 1 5.8754 3.5063 0.5152 30 1 5.9712 1.7289 0.5148 31 1 5.7557 1.7179 -1.9554 32 1 5.6599 3.4953 -1.9550 33 1 8.7289 0.4197 -5.1243 34 1 9.3710 3.1300 0.4468 35 1 10.0533 3.7424 -1.0788 36 1 9.5239 4.8832 0.1807 37 1 4.0206 0.3799 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261354186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:05 Heat of formation + Delta-G solvation = -91.823305 kcal Electronic energy + Delta-G solvation = -18052.986815 eV Core-core repulsion = 15180.576386 eV Total energy + Delta-G solvation = -2872.410428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08097 -39.17623 -38.38276 -35.21320 -34.44685 -31.86393 -31.16990 -28.73942 -27.99576 -27.25281 -24.88238 -23.44432 -22.32325 -21.55572 -19.31022 -18.59131 -17.56452 -17.13845 -16.88310 -16.63497 -16.36685 -15.88281 -15.30889 -15.13043 -14.73837 -14.59617 -14.18486 -14.10189 -13.90651 -13.40991 -13.04630 -12.94123 -12.72990 -12.63886 -12.23890 -12.05010 -11.93245 -11.77114 -11.76677 -11.58860 -11.22871 -10.83290 -10.15146 -9.70504 -9.12855 -8.37468 -6.43606 0.38051 0.51152 1.29401 1.30935 1.38901 2.26184 2.38124 2.80225 2.96062 3.27535 3.86193 3.90111 4.14822 4.24876 4.32778 4.39846 4.42205 4.46198 4.56940 4.59995 4.64115 4.67951 4.72382 4.79919 4.84553 4.94746 5.08581 5.15955 5.23964 5.34792 5.40888 5.51369 5.61882 5.76471 5.87307 6.10220 6.48557 6.52946 6.75324 7.26591 8.79905 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.006025 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.989698 B = 4646.107243 C = 5439.195749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.115 3.885 4 C -0.216 4.216 5 C -0.076 4.076 6 C -0.164 4.164 7 C -0.045 4.045 8 C -0.076 4.076 9 C -0.093 4.093 10 C 0.187 3.813 11 H 0.027 0.973 12 C -0.547 4.547 13 H 0.029 0.971 14 C 0.023 3.977 15 N -0.941 5.941 16 Si 0.927 3.073 17 H -0.257 1.257 18 H -0.280 1.280 19 H -0.242 1.242 20 O -0.408 6.408 21 C 0.036 3.964 22 C -0.177 4.177 23 H 0.117 0.883 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.269 0.731 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.101 0.899 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 -0.117 13.828 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.094 4.094 6 C -0.182 4.182 7 C -0.045 4.045 8 C -0.113 4.113 9 C -0.131 4.131 10 C 0.130 3.870 11 H 0.045 0.955 12 C -0.585 4.585 13 H 0.048 0.952 14 C -0.176 4.176 15 N -0.580 5.580 16 Si 0.750 3.250 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.166 1.166 20 O -0.327 6.327 21 C -0.060 4.060 22 C -0.196 4.196 23 H 0.135 0.865 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.171 0.829 27 H 0.173 0.827 28 H 0.151 0.849 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.119 0.881 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.511 -0.272 13.679 20.682 hybrid contribution 0.407 -0.866 -0.455 1.060 sum -15.104 -1.138 13.224 20.107 Atomic orbital electron populations 1.23344 0.76348 1.05491 1.02377 1.86042 1.23670 1.27078 1.88828 1.19132 0.92055 0.85104 0.96704 1.21487 1.01092 0.91727 1.09131 1.21277 0.94104 0.98095 0.95936 1.21234 0.94567 0.98134 1.04256 1.19849 0.95850 0.92701 0.96090 1.20658 0.90283 1.03364 0.97006 1.21661 0.95014 1.00922 0.95507 1.20158 0.92367 0.83461 0.91011 0.95496 1.21760 1.44592 0.93016 0.99133 0.95223 1.25809 0.93732 1.02309 0.95742 1.70058 1.49432 1.26052 1.12484 0.86021 0.79839 0.78906 0.80282 1.18194 1.20594 1.16598 1.87665 1.32845 1.35536 1.76665 1.22705 0.84615 1.02451 0.96262 1.20431 0.92312 0.98277 1.08579 0.86513 0.91256 0.91818 0.82867 0.82734 0.84856 0.89476 0.91236 0.93130 0.92781 0.92214 0.93888 0.96024 0.88062 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.00 10.50 -92.39 -0.97 -9.97 16 3 C 0.12 3.27 6.69 22.51 0.15 3.42 16 4 C -0.22 -4.97 9.04 22.37 0.20 -4.77 16 5 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 6 C -0.16 -4.54 9.70 22.28 0.22 -4.32 16 7 C -0.04 -1.44 5.13 -19.88 -0.10 -1.54 16 8 C -0.08 -2.63 5.24 29.85 0.16 -2.47 16 9 C -0.09 -4.03 4.75 30.60 0.15 -3.89 16 10 C 0.19 9.04 1.68 29.85 0.05 9.09 16 11 H 0.03 1.28 5.10 -2.39 -0.01 1.27 16 12 C -0.55 -32.29 9.06 25.60 0.23 -32.06 16 13 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 14 C 0.02 1.33 5.47 84.66 0.46 1.80 16 15 N -0.94 -59.29 13.96 21.45 0.30 -58.99 16 16 Si 0.93 43.70 26.48 68.60 1.82 45.52 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.24 -10.48 6.36 99.48 0.63 -9.85 16 20 O -0.41 -18.42 9.89 -148.98 -1.47 -19.89 16 21 C 0.04 1.34 10.83 113.37 1.23 2.56 16 22 C -0.18 -5.74 9.64 22.37 0.22 -5.53 16 23 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 26 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 27 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.09 2.85 7.76 -2.39 -0.02 2.83 16 30 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 31 H 0.05 2.31 7.27 -2.39 -0.02 2.30 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.04 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.02 0.86 8.10 -2.39 -0.02 0.85 16 36 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -70.87 309.35 4.93 -65.94 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.96 Total: 15.22 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.29 Total: -37.83 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.30 Total: -58.99 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -2.44 Total: -29.86 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.82 Total: 45.52 kcal Total: -70.87 4.93 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.883 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds