Wall clock time and date at job start Mon Mar 30 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 116.99716 * 2 1 4 4 C 1.38730 * 120.05534 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05487 * 0.02604 * 5 4 3 7 7 C 1.50701 * 119.94809 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47087 * 89.99545 * 7 6 5 9 9 C 1.52999 * 109.47248 * 305.00631 * 8 7 6 10 10 C 1.50701 * 109.47386 * 185.00481 * 8 7 6 11 11 H 1.08005 * 119.99597 * 0.02562 * 10 8 7 12 12 C 1.37873 * 120.00509 * 180.02562 * 10 8 7 13 13 N 1.31524 * 119.99682 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00264 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46771 * 90.00136 * 14 12 10 16 16 H 1.48497 * 109.47087 * 209.99938 * 14 12 10 17 17 H 1.48497 * 109.46938 * 330.00176 * 14 12 10 18 18 O 1.42899 * 109.47094 * 65.00405 * 8 7 6 19 19 C 1.42905 * 113.99778 * 59.99687 * 18 8 7 20 20 C 1.38271 * 120.11262 * 0.25091 * 6 5 4 21 21 C 1.38149 * 120.05128 * 359.44772 * 20 6 5 22 22 H 1.08993 * 109.47000 * 60.00056 * 1 2 3 23 23 H 1.08999 * 109.46208 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46978 * 299.99280 * 1 2 3 25 25 H 1.07998 * 120.03026 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.97335 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46374 * 329.99845 * 7 6 5 28 28 H 1.09000 * 109.47539 * 210.00342 * 7 6 5 29 29 H 1.09008 * 109.47201 * 180.02562 * 9 8 7 30 30 H 1.09001 * 109.47296 * 299.99806 * 9 8 7 31 31 H 1.08997 * 109.47286 * 59.99917 * 9 8 7 32 32 H 0.96999 * 119.99740 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46558 * 60.00281 * 19 18 8 34 34 H 1.09001 * 109.47103 * 179.97438 * 19 18 8 35 35 H 1.09000 * 109.47187 * 300.00233 * 19 18 8 36 36 H 1.07995 * 119.97161 * 179.70771 * 20 6 5 37 37 H 1.08002 * 120.02824 * 180.25125 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9858 5.0188 0.0028 8 6 4.2179 5.4741 -1.4393 9 6 4.9940 4.3946 -2.1964 10 6 5.0100 6.7561 -1.4400 11 1 5.3175 7.2014 -0.5053 12 6 5.3421 7.3607 -2.6338 13 7 4.9680 6.8183 -3.7720 14 14 6.3234 8.9502 -2.6345 15 1 7.7742 8.6362 -2.6758 16 1 5.9576 9.7572 -3.8262 17 1 6.0185 9.7207 -1.4022 18 8 2.9585 5.6920 -2.0785 19 6 2.1506 6.6872 -1.4468 20 6 1.9209 3.6049 0.0069 21 6 1.2914 2.3751 0.0001 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 4.0209 0.3801 0.0005 26 1 5.1344 2.5752 0.0019 27 1 4.9436 4.9381 0.5170 28 1 3.3576 5.7461 0.5169 29 1 5.1598 4.7193 -3.2237 30 1 5.9547 4.2284 -1.7088 31 1 4.4211 3.4674 -2.1959 32 1 5.2014 7.2438 -4.6119 33 1 2.6807 7.6396 -1.4475 34 1 1.2126 6.7934 -1.9919 35 1 1.9424 6.3879 -0.4196 36 1 1.3340 4.5114 0.0120 37 1 0.2128 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261354835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:51 Heat of formation + Delta-G solvation = -58.688655 kcal Electronic energy + Delta-G solvation = -18842.063744 eV Core-core repulsion = 15971.090141 eV Total energy + Delta-G solvation = -2870.973602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.84092 -38.01000 -36.35787 -32.65943 -31.79432 -30.72824 -28.99561 -27.46526 -25.89386 -24.79309 -24.67460 -22.24591 -21.08258 -19.05084 -17.82905 -16.69176 -15.87847 -15.56662 -14.97076 -14.66416 -14.36444 -13.93341 -13.76550 -13.43040 -13.35466 -13.04494 -12.53236 -12.20953 -11.83030 -11.44048 -11.32461 -11.05188 -10.91466 -10.75572 -10.62500 -10.52521 -10.32094 -10.13585 -10.10380 -9.62829 -8.78562 -8.56973 -8.44396 -7.95587 -7.42134 -5.94846 -4.14928 1.79079 1.91519 3.27471 3.35254 3.37290 3.48232 4.22593 4.40378 5.04077 5.17661 5.18945 5.22118 5.29646 5.45842 5.52929 5.69325 5.78766 5.88396 6.06949 6.19995 6.43034 6.48486 6.53027 6.63438 6.70143 6.83119 6.85603 7.01615 7.05345 7.14796 7.24381 7.27015 7.54564 7.70426 7.77324 8.08555 8.31330 8.81973 9.12630 9.58506 11.04104 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.044074 B = 0.005584 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.136682 B = 5012.946055 C = 5201.310437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.102 3.898 4 C -0.153 4.153 5 C -0.079 4.079 6 C -0.080 4.080 7 C -0.105 4.105 8 C 0.244 3.756 9 C -0.125 4.125 10 C -0.555 4.555 11 H 0.055 0.945 12 C 0.082 3.918 13 N -0.855 5.855 14 Si 0.884 3.116 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.371 6.371 19 C 0.049 3.951 20 C -0.074 4.074 21 C -0.206 4.206 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.051 0.949 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.259 0.741 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.013 0.987 36 H 0.120 0.880 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -8.457 6.962 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.058 3.942 4 C -0.171 4.171 5 C -0.097 4.097 6 C -0.080 4.080 7 C -0.142 4.142 8 C 0.206 3.794 9 C -0.182 4.182 10 C -0.593 4.593 11 H 0.073 0.927 12 C -0.123 4.123 13 N -0.491 5.491 14 Si 0.712 3.288 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 O -0.290 6.290 19 C -0.048 4.048 20 C -0.092 4.092 21 C -0.225 4.225 22 H 0.072 0.928 23 H 0.112 0.888 24 H 0.070 0.930 25 H 0.140 0.860 26 H 0.144 0.856 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.138 0.862 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.549 -8.739 6.588 12.754 hybrid contribution 0.301 1.285 0.136 1.326 sum -6.248 -7.455 6.723 11.824 Atomic orbital electron populations 1.22950 0.79154 1.03201 1.01206 1.86012 1.20793 1.27542 1.89500 1.18912 0.92328 0.83724 0.99229 1.20307 0.91171 0.98353 1.07296 1.20886 0.99815 0.90960 0.98059 1.20012 0.93381 0.96020 0.98619 1.21387 0.99194 0.91646 1.02000 1.18946 0.82088 0.93455 0.84877 1.21679 0.96908 0.95575 1.04059 1.21473 1.36522 1.08681 0.92617 0.92717 1.24963 0.94741 0.96989 0.95631 1.70003 1.43616 1.38326 0.97152 0.86743 0.80553 0.83923 0.77613 1.20559 1.21185 1.19920 1.87899 1.30156 1.56379 1.54551 1.22239 0.93795 0.94057 0.94716 1.20836 0.94373 0.96557 0.97402 1.21109 0.99325 0.92528 1.09539 0.92841 0.88821 0.93035 0.85951 0.85614 0.91491 0.92018 0.89481 0.94436 0.95895 0.93076 0.94036 0.93297 0.96900 0.86190 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.73 10.50 -19.45 -0.20 -4.94 16 3 C 0.10 1.66 6.69 -39.22 -0.26 1.40 16 4 C -0.15 -2.50 9.99 -39.43 -0.39 -2.89 16 5 C -0.08 -1.38 7.84 -39.61 -0.31 -1.69 16 6 C -0.08 -1.51 4.24 -104.60 -0.44 -1.96 16 7 C -0.10 -2.16 4.16 -27.88 -0.12 -2.28 16 8 C 0.24 5.94 0.41 -91.77 -0.04 5.90 16 9 C -0.12 -3.03 7.85 37.16 0.29 -2.74 16 10 C -0.56 -14.68 6.76 -34.44 -0.23 -14.91 16 11 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 12 C 0.08 2.22 5.24 -17.82 -0.09 2.13 16 13 N -0.86 -24.08 10.87 55.43 0.60 -23.48 16 14 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 18 O -0.37 -9.39 9.25 -35.23 -0.33 -9.72 16 19 C 0.05 1.07 10.10 101.05 1.02 2.09 16 20 C -0.07 -1.31 9.39 -39.60 -0.37 -1.68 16 21 C -0.21 -3.30 9.04 -39.43 -0.36 -3.65 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 25 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 26 H 0.13 2.04 8.03 -52.49 -0.42 1.62 16 27 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 28 H 0.06 1.25 6.23 -51.93 -0.32 0.92 16 29 H 0.09 2.36 6.07 -51.92 -0.32 2.05 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.52 6.14 -51.93 -0.32 0.20 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.04 0.97 7.15 -51.93 -0.37 0.60 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.01 0.25 4.96 -51.93 -0.26 -0.01 16 36 H 0.12 2.05 6.48 -52.49 -0.34 1.71 16 37 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -29.66 296.31 -5.92 -35.59 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.13 Total: 1.34 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.31 Total: -18.97 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.60 Total: -23.48 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.53 Total: -14.66 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.66 -5.92 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.103 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds