Wall clock time and date at job start Mon Mar 30 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 116.99716 * 2 1 4 4 C 1.38730 * 120.05534 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05487 * 0.02604 * 5 4 3 7 7 C 1.50701 * 119.94809 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47087 * 89.99545 * 7 6 5 9 9 C 1.52999 * 109.47248 * 305.00631 * 8 7 6 10 10 C 1.50701 * 109.47386 * 185.00481 * 8 7 6 11 11 H 1.08005 * 119.99597 * 0.02562 * 10 8 7 12 12 C 1.37873 * 120.00509 * 180.02562 * 10 8 7 13 13 N 1.31524 * 119.99682 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00264 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46771 * 90.00136 * 14 12 10 16 16 H 1.48497 * 109.47087 * 209.99938 * 14 12 10 17 17 H 1.48497 * 109.46938 * 330.00176 * 14 12 10 18 18 O 1.42899 * 109.47094 * 65.00405 * 8 7 6 19 19 C 1.42905 * 113.99778 * 59.99687 * 18 8 7 20 20 C 1.38271 * 120.11262 * 0.25091 * 6 5 4 21 21 C 1.38149 * 120.05128 * 359.44772 * 20 6 5 22 22 H 1.08993 * 109.47000 * 60.00056 * 1 2 3 23 23 H 1.08999 * 109.46208 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46978 * 299.99280 * 1 2 3 25 25 H 1.07998 * 120.03026 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.97335 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46374 * 329.99845 * 7 6 5 28 28 H 1.09000 * 109.47539 * 210.00342 * 7 6 5 29 29 H 1.09008 * 109.47201 * 180.02562 * 9 8 7 30 30 H 1.09001 * 109.47296 * 299.99806 * 9 8 7 31 31 H 1.08997 * 109.47286 * 59.99917 * 9 8 7 32 32 H 0.96999 * 119.99740 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46558 * 60.00281 * 19 18 8 34 34 H 1.09001 * 109.47103 * 179.97438 * 19 18 8 35 35 H 1.09000 * 109.47187 * 300.00233 * 19 18 8 36 36 H 1.07995 * 119.97161 * 179.70771 * 20 6 5 37 37 H 1.08002 * 120.02824 * 180.25125 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9858 5.0188 0.0028 8 6 4.2179 5.4741 -1.4393 9 6 4.9940 4.3946 -2.1964 10 6 5.0100 6.7561 -1.4400 11 1 5.3175 7.2014 -0.5053 12 6 5.3421 7.3607 -2.6338 13 7 4.9680 6.8183 -3.7720 14 14 6.3234 8.9502 -2.6345 15 1 7.7742 8.6362 -2.6758 16 1 5.9576 9.7572 -3.8262 17 1 6.0185 9.7207 -1.4022 18 8 2.9585 5.6920 -2.0785 19 6 2.1506 6.6872 -1.4468 20 6 1.9209 3.6049 0.0069 21 6 1.2914 2.3751 0.0001 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 4.0209 0.3801 0.0005 26 1 5.1344 2.5752 0.0019 27 1 4.9436 4.9381 0.5170 28 1 3.3576 5.7461 0.5169 29 1 5.1598 4.7193 -3.2237 30 1 5.9547 4.2284 -1.7088 31 1 4.4211 3.4674 -2.1959 32 1 5.2014 7.2438 -4.6119 33 1 2.6807 7.6396 -1.4475 34 1 1.2126 6.7934 -1.9919 35 1 1.9424 6.3879 -0.4196 36 1 1.3340 4.5114 0.0120 37 1 0.2128 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261354835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:51 Heat of formation + Delta-G solvation = -75.876521 kcal Electronic energy + Delta-G solvation = -18842.809065 eV Core-core repulsion = 15971.090141 eV Total energy + Delta-G solvation = -2871.718924 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07694 -39.51653 -37.85385 -34.62192 -33.44814 -32.01067 -30.58797 -28.56272 -27.64376 -26.53024 -26.41635 -23.53598 -22.49377 -20.78097 -18.98450 -18.61899 -17.10920 -16.78654 -16.54700 -16.29031 -16.03950 -15.55256 -15.42297 -14.94967 -14.55781 -14.54137 -14.03806 -13.63768 -13.13057 -13.06490 -12.82285 -12.77980 -12.73676 -12.41271 -12.24168 -12.12495 -11.92545 -11.84984 -11.61157 -11.37484 -10.64109 -10.51990 -9.81429 -9.76354 -8.81690 -7.97703 -6.24209 0.50753 0.60034 1.41184 1.43612 1.51717 2.43538 2.46505 2.92531 3.18752 3.76471 3.93289 4.04741 4.21642 4.33563 4.43402 4.51279 4.55536 4.69300 4.71318 4.76986 4.81223 4.88838 4.93140 5.10152 5.15183 5.18840 5.24691 5.34345 5.43579 5.52382 5.58426 5.69778 5.88523 5.92802 6.14475 6.31357 6.54739 6.81439 7.23500 7.54749 8.99411 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.044074 B = 0.005584 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.136682 B = 5012.946055 C = 5201.310437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.103 3.897 4 C -0.160 4.160 5 C -0.085 4.085 6 C -0.103 4.103 7 C -0.093 4.093 8 C 0.237 3.763 9 C -0.115 4.115 10 C -0.565 4.565 11 H 0.051 0.949 12 C 0.039 3.961 13 N -0.885 5.885 14 Si 0.942 3.058 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.270 1.270 18 O -0.395 6.395 19 C 0.050 3.950 20 C -0.083 4.083 21 C -0.206 4.206 22 H 0.057 0.943 23 H 0.121 0.879 24 H 0.063 0.937 25 H 0.140 0.860 26 H 0.132 0.868 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.257 0.743 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.122 0.878 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 -9.269 7.866 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.058 3.942 4 C -0.178 4.178 5 C -0.103 4.103 6 C -0.103 4.103 7 C -0.131 4.131 8 C 0.199 3.801 9 C -0.172 4.172 10 C -0.603 4.603 11 H 0.069 0.931 12 C -0.164 4.164 13 N -0.522 5.522 14 Si 0.768 3.232 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.194 1.194 18 O -0.314 6.314 19 C -0.047 4.047 20 C -0.101 4.101 21 C -0.225 4.225 22 H 0.076 0.924 23 H 0.139 0.861 24 H 0.082 0.918 25 H 0.158 0.842 26 H 0.149 0.851 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.140 0.860 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.470 -9.554 7.509 14.264 hybrid contribution 0.488 1.437 -0.118 1.522 sum -6.982 -8.117 7.391 13.010 Atomic orbital electron populations 1.23300 0.76807 1.05420 1.01986 1.86010 1.23213 1.26617 1.89096 1.19076 0.92531 0.84501 0.98075 1.20541 0.91827 0.98583 1.06893 1.20982 1.00199 0.91074 0.98071 1.19915 0.94078 0.95354 1.00990 1.21142 0.99570 0.92927 0.99441 1.18984 0.81660 0.92583 0.86866 1.21549 0.97504 0.96002 1.02171 1.21793 1.36497 1.09645 0.92387 0.93109 1.25619 0.95689 0.99714 0.95391 1.70143 1.44950 1.39570 0.97506 0.85836 0.79317 0.80593 0.77503 1.20104 1.21254 1.19421 1.87840 1.30589 1.57205 1.55776 1.22319 0.93737 0.92314 0.96281 1.20946 0.94037 0.97500 0.97655 1.21352 1.00760 0.91735 1.08622 0.92427 0.86072 0.91789 0.84203 0.85063 0.91420 0.92019 0.92650 0.93755 0.95110 0.93348 0.96255 0.91400 0.94618 0.85978 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -8.87 10.50 -92.50 -0.97 -9.84 16 3 C 0.10 3.11 6.69 22.51 0.15 3.26 16 4 C -0.16 -4.96 9.99 22.37 0.22 -4.73 16 5 C -0.09 -2.88 7.84 22.25 0.17 -2.71 16 6 C -0.10 -3.80 4.24 -19.85 -0.08 -3.89 16 7 C -0.09 -3.82 4.16 29.85 0.12 -3.69 16 8 C 0.24 11.55 0.41 -11.54 0.00 11.54 16 9 C -0.11 -5.62 7.85 71.98 0.57 -5.05 16 10 C -0.57 -30.03 6.76 25.60 0.17 -29.86 16 11 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 12 C 0.04 2.09 5.24 84.65 0.44 2.53 16 13 N -0.88 -50.59 10.87 21.45 0.23 -50.36 16 14 Si 0.94 42.77 29.54 68.60 2.03 44.80 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 O -0.39 -19.98 9.25 -148.98 -1.38 -21.36 16 19 C 0.05 2.17 10.10 113.37 1.15 3.31 16 20 C -0.08 -2.83 9.39 22.26 0.21 -2.62 16 21 C -0.21 -6.11 9.04 22.37 0.20 -5.91 16 22 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 23 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 25 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 26 H 0.13 4.15 8.03 -2.91 -0.02 4.13 16 27 H 0.07 2.68 8.08 -2.38 -0.02 2.67 16 28 H 0.06 2.46 6.23 -2.39 -0.01 2.44 16 29 H 0.05 3.06 6.07 -2.38 -0.01 3.04 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.40 6.14 -2.39 -0.01 1.39 16 32 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.02 0.89 7.15 -2.39 -0.02 0.88 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.04 1.35 4.96 -2.39 -0.01 1.34 16 36 H 0.12 3.99 6.48 -2.91 -0.02 3.97 16 37 H 0.15 3.41 6.30 -2.91 -0.02 3.40 16 Total: -1.00 -62.72 296.31 5.40 -57.31 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.06 Total: 15.81 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 4.43 Total: -36.37 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.23 Total: -50.36 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -2.35 Total: -31.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -62.72 5.40 -57.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.562 kcal (2) G-P(sol) polarization free energy of solvation -62.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds