Wall clock time and date at job start Mon Mar 30 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99781 * 2 1 4 4 C 1.38749 * 120.05916 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94801 * 179.97438 * 4 3 2 6 6 C 1.38296 * 120.05107 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11014 * 0.03083 * 6 5 4 8 8 C 1.38163 * 120.05846 * 359.94904 * 7 6 5 9 9 C 1.50705 * 120.02617 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46916 * 264.99878 * 9 8 7 11 11 C 1.52996 * 109.47297 * 305.00281 * 10 9 8 12 12 C 1.50695 * 109.47277 * 184.99792 * 10 9 8 13 13 H 1.08004 * 119.99656 * 5.12407 * 12 10 9 14 14 C 1.37875 * 120.00448 * 185.11104 * 12 10 9 15 15 N 1.31512 * 119.99776 * 5.88122 * 14 12 10 16 16 Si 1.86802 * 120.00417 * 185.87266 * 14 12 10 17 17 H 1.48495 * 109.47083 * 84.98780 * 16 14 12 18 18 H 1.48499 * 109.47092 * 204.99130 * 16 14 12 19 19 H 1.48500 * 109.46760 * 324.99065 * 16 14 12 20 20 O 1.42907 * 109.46988 * 65.00116 * 10 9 8 21 21 C 1.42900 * 113.99917 * 59.99853 * 20 10 9 22 22 H 1.09003 * 109.47218 * 300.00400 * 1 2 3 23 23 H 1.09002 * 109.47201 * 59.99839 * 1 2 3 24 24 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.02669 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.97506 * 180.29600 * 5 4 3 27 27 H 1.07999 * 119.94004 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.96589 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46953 * 24.99890 * 9 8 7 30 30 H 1.09001 * 109.47112 * 145.00050 * 9 8 7 31 31 H 1.08999 * 109.47023 * 64.68183 * 11 10 9 32 32 H 1.09001 * 109.46997 * 184.68155 * 11 10 9 33 33 H 1.09000 * 109.47401 * 304.68517 * 11 10 9 34 34 H 0.96998 * 120.00320 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.46993 * 300.00442 * 21 20 10 36 36 H 1.09004 * 109.47140 * 60.00013 * 21 20 10 37 37 H 1.08997 * 109.46981 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3020 3.6758 0.0005 7 6 4.0559 2.5171 -0.0001 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0221 -0.0003 10 6 4.4267 -0.4737 -1.4374 11 6 3.0522 -0.6409 -2.0882 12 6 5.1431 -1.7994 -1.4286 13 1 5.3713 -2.2837 -0.4906 14 6 5.5071 -2.3943 -2.6180 15 7 5.3340 -1.7539 -3.7535 16 14 6.2462 -4.1099 -2.6166 17 1 5.1563 -5.1184 -2.6097 18 1 7.0802 -4.2906 -3.8318 19 1 7.0896 -4.2844 -1.4068 20 8 5.1929 0.4768 -2.1802 21 6 6.5011 0.7078 -1.6534 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2128 2.3203 -0.0005 26 1 1.3340 4.5114 0.0044 27 1 3.7922 4.6381 0.0014 28 1 5.1344 2.5752 -0.0001 29 1 5.2324 0.2261 0.4340 30 1 3.7467 -0.7419 0.5890 31 1 2.5681 0.3322 -2.1700 32 1 3.1709 -1.0725 -3.0821 33 1 2.4384 -1.3017 -1.4761 34 1 5.5903 -2.1722 -4.5903 35 1 6.4208 1.0855 -0.6341 36 1 7.0622 -0.2266 -1.6515 37 1 7.0181 1.4404 -2.2731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261355329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:56 Heat of formation + Delta-G solvation = -54.122270 kcal Electronic energy + Delta-G solvation = -19424.895938 eV Core-core repulsion = 16554.120349 eV Total energy + Delta-G solvation = -2870.775589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92062 -37.30393 -36.58742 -32.56770 -32.17723 -29.87007 -29.20648 -27.11438 -25.97193 -24.99159 -24.56023 -21.71251 -21.34993 -19.00657 -17.50758 -16.60521 -15.72238 -15.46495 -15.12039 -14.63156 -14.18605 -14.07428 -13.60076 -13.53614 -13.16395 -12.53770 -12.40516 -12.08451 -11.66880 -11.41276 -11.22549 -10.90987 -10.83333 -10.74069 -10.66713 -10.49101 -10.31656 -10.04634 -9.95632 -9.52954 -8.74879 -8.41968 -8.31875 -7.82616 -7.40227 -5.87070 -4.05386 1.82239 1.92299 3.32432 3.39272 3.41494 3.73146 4.24864 4.46591 5.14236 5.22854 5.29836 5.34753 5.40269 5.48813 5.68178 5.69837 5.82234 5.91912 6.09144 6.31903 6.42425 6.52997 6.62072 6.75320 6.80332 6.88858 6.96150 7.09065 7.15340 7.18101 7.26394 7.41715 7.61040 7.86122 7.88044 8.11088 8.35595 8.89483 9.24564 9.66582 11.12485 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.007860 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.455922 B = 3561.645161 C = 4173.237358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.129 3.871 4 C -0.214 4.214 5 C -0.102 4.102 6 C -0.159 4.159 7 C -0.079 4.079 8 C -0.077 4.077 9 C -0.099 4.099 10 C 0.246 3.754 11 C -0.109 4.109 12 C -0.554 4.554 13 H 0.054 0.946 14 C 0.082 3.918 15 N -0.850 5.850 16 Si 0.880 3.120 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.275 1.275 20 O -0.366 6.366 21 C 0.054 3.946 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.257 0.743 35 H 0.010 0.990 36 H 0.041 0.959 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.786 7.131 7.003 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.212 6.212 3 C 0.084 3.916 4 C -0.233 4.233 5 C -0.120 4.120 6 C -0.178 4.178 7 C -0.097 4.097 8 C -0.078 4.078 9 C -0.136 4.136 10 C 0.208 3.792 11 C -0.166 4.166 12 C -0.592 4.592 13 H 0.072 0.928 14 C -0.124 4.124 15 N -0.486 5.486 16 Si 0.708 3.292 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.200 1.200 20 O -0.285 6.285 21 C -0.044 4.044 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.059 0.941 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.766 7.017 6.627 11.787 hybrid contribution 0.292 -0.907 0.122 0.960 sum -6.475 6.110 6.749 11.172 Atomic orbital electron populations 1.22963 0.79871 1.03426 1.00560 1.86280 1.20003 1.26543 1.88423 1.18803 0.91967 0.84007 0.96793 1.21087 0.99338 0.92598 1.10263 1.20718 0.94594 0.96459 1.00240 1.20930 0.93863 0.98027 1.04931 1.20876 0.99736 0.91108 0.97939 1.19507 0.90624 0.96647 1.01006 1.21293 0.97306 0.92819 1.02209 1.18937 0.89723 0.86675 0.83843 1.21564 0.95030 0.98024 1.02025 1.21452 1.39949 1.05269 0.92563 0.92782 1.24966 0.95038 0.96705 0.95708 1.70118 1.45250 1.35811 0.97378 0.86824 0.79271 0.85695 0.77421 1.20547 1.21329 1.20022 1.87889 1.23965 1.62341 1.54298 1.22187 0.87933 0.99104 0.95156 0.93454 0.93072 0.88656 0.86274 0.86768 0.86709 0.85916 0.92109 0.91184 0.96480 0.91563 0.93246 0.93284 0.97221 0.94058 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.36 6.99 -19.42 -0.14 -5.50 16 3 C 0.13 2.38 5.15 -39.22 -0.20 2.18 16 4 C -0.21 -3.36 9.04 -39.43 -0.36 -3.72 16 5 C -0.10 -1.50 10.04 -39.60 -0.40 -1.90 16 6 C -0.16 -2.47 10.04 -39.56 -0.40 -2.87 16 7 C -0.08 -1.41 9.60 -39.61 -0.38 -1.79 16 8 C -0.08 -1.53 4.38 -104.47 -0.46 -1.99 16 9 C -0.10 -2.17 3.98 -27.88 -0.11 -2.28 16 10 C 0.25 6.22 0.41 -91.78 -0.04 6.18 16 11 C -0.11 -2.74 7.15 37.16 0.27 -2.47 16 12 C -0.55 -15.13 6.75 -34.44 -0.23 -15.36 16 13 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 14 C 0.08 2.25 5.12 -17.82 -0.09 2.16 16 15 N -0.85 -24.49 11.17 55.43 0.62 -23.87 16 16 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.37 -9.60 9.00 -35.23 -0.32 -9.92 16 21 C 0.05 1.22 10.31 101.05 1.04 2.26 16 22 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 23 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 26 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.12 2.10 6.81 -52.49 -0.36 1.74 16 29 H 0.06 1.29 6.20 -51.93 -0.32 0.97 16 30 H 0.07 1.55 7.69 -51.93 -0.40 1.15 16 31 H 0.02 0.40 6.22 -51.93 -0.32 0.08 16 32 H 0.07 1.83 6.63 -51.93 -0.34 1.49 16 33 H 0.05 1.18 6.73 -51.93 -0.35 0.83 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.01 0.19 5.05 -51.93 -0.26 -0.07 16 36 H 0.04 1.01 7.10 -51.93 -0.37 0.64 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 292.32 15.07 4.41 4.41 Total: -1.00 -30.67 292.32 -5.90 -36.57 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.09 Total: 0.40 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.37 Total: -18.25 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.62 Total: -23.87 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.45 Total: -15.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.67 -5.90 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261355329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.554 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds