Wall clock time and date at job start Mon Mar 30 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11180 * 0.25948 * 6 5 4 8 8 C 1.50696 * 119.97243 * 179.70308 * 7 6 5 9 9 C 1.52997 * 109.47496 * 89.99153 * 8 7 6 10 10 C 1.53005 * 109.47056 * 60.00439 * 9 8 7 11 11 C 1.50705 * 109.47494 * 179.97438 * 9 8 7 12 12 H 1.08003 * 119.99646 * 0.02562 * 11 9 8 13 13 C 1.37880 * 120.00236 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99764 * 180.02562 * 13 11 9 15 15 Si 1.86804 * 119.99803 * 0.02562 * 13 11 9 16 16 H 1.48501 * 109.46826 * 89.99741 * 15 13 11 17 17 H 1.48493 * 109.46756 * 209.99255 * 15 13 11 18 18 H 1.48501 * 109.47032 * 330.00014 * 15 13 11 19 19 O 1.42899 * 109.47513 * 300.00178 * 9 8 7 20 20 C 1.42903 * 113.99888 * 300.00110 * 19 9 8 21 21 C 1.38173 * 120.05599 * 359.44059 * 7 6 5 22 22 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 23 23 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 25 25 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 26 26 H 1.07998 * 119.97579 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.93997 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.47405 * 209.99619 * 8 7 6 29 29 H 1.09005 * 109.46844 * 329.99294 * 8 7 6 30 30 H 1.08996 * 109.47050 * 59.99667 * 10 9 8 31 31 H 1.09002 * 109.47378 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.46437 * 300.00093 * 10 9 8 33 33 H 0.97001 * 119.99633 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46865 * 299.99514 * 20 19 9 35 35 H 1.08998 * 109.46920 * 59.99839 * 20 19 9 36 36 H 1.08993 * 109.46709 * 179.97438 * 20 19 9 37 37 H 1.08001 * 120.02637 * 180.25972 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0081 8 6 5.5607 2.5981 -0.0166 9 6 6.0783 2.6231 1.4229 10 6 5.6405 1.3469 2.1445 11 6 7.5832 2.7035 1.4144 12 1 8.1170 2.7342 0.4760 13 6 8.2784 2.7389 2.6046 14 7 9.5916 2.8096 2.5970 15 14 7.3551 2.6866 4.2276 16 1 7.1856 1.2746 4.6553 17 1 8.1249 3.4272 5.2591 18 1 6.0208 3.3161 4.0585 19 8 5.5439 3.7613 2.1017 20 6 5.8954 5.0116 1.5055 21 6 3.4311 1.2847 -0.0013 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2127 2.3203 0.0017 26 1 1.3340 4.5114 0.0008 27 1 3.7922 4.6381 -0.0024 28 1 5.9684 1.7299 -0.5343 29 1 5.8726 3.5073 -0.5307 30 1 6.0481 0.4787 1.6268 31 1 6.0088 1.3648 3.1703 32 1 4.5520 1.2883 2.1507 33 1 10.0808 2.8342 3.4343 34 1 6.9800 5.1198 1.5011 35 1 5.5228 5.0434 0.4817 36 1 5.4511 5.8251 2.0789 37 1 4.0206 0.3798 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261360608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:58 Heat of formation + Delta-G solvation = -48.277181 kcal Electronic energy + Delta-G solvation = -19032.433973 eV Core-core repulsion = 16161.911846 eV Total energy + Delta-G solvation = -2870.522127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98733 -38.26117 -36.65530 -32.89595 -32.17958 -30.26059 -29.93984 -27.24040 -26.41540 -25.28423 -24.81396 -22.20858 -21.24768 -19.26887 -17.43881 -16.80175 -16.02162 -15.81213 -15.66833 -15.20359 -14.61980 -14.16610 -13.84138 -13.45301 -13.30065 -12.94208 -12.79677 -12.38217 -12.06056 -11.87979 -11.70611 -11.26841 -11.15950 -10.98598 -10.77207 -10.55869 -10.36077 -10.14562 -10.09653 -9.64470 -8.83543 -8.62719 -8.40596 -7.97331 -7.77153 -6.12064 -4.21153 1.67024 1.78477 3.38701 3.39064 3.50390 3.73987 4.10523 4.52647 4.93113 5.01562 5.09355 5.10973 5.16583 5.34768 5.38668 5.47257 5.68866 5.74795 5.86906 6.05615 6.11767 6.31288 6.36652 6.41355 6.53236 6.57685 6.59980 6.71968 6.81830 6.86973 6.89470 7.03941 7.12090 7.37326 7.60750 7.65857 8.21941 8.69275 8.89131 9.53103 10.98514 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.006795 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.103433 B = 4119.955239 C = 4408.330567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.224 4.224 5 C -0.084 4.084 6 C -0.146 4.146 7 C -0.015 4.015 8 C -0.097 4.097 9 C 0.209 3.791 10 C -0.135 4.135 11 C -0.546 4.546 12 H 0.075 0.925 13 C 0.086 3.914 14 N -0.892 5.892 15 Si 0.874 3.126 16 H -0.288 1.288 17 H -0.306 1.306 18 H -0.218 1.218 19 O -0.391 6.391 20 C 0.039 3.961 21 C -0.149 4.149 22 H 0.051 0.949 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.025 0.975 36 H 0.055 0.945 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -0.773 -5.053 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.075 3.925 4 C -0.243 4.243 5 C -0.102 4.102 6 C -0.164 4.164 7 C -0.015 4.015 8 C -0.134 4.134 9 C 0.171 3.829 10 C -0.192 4.192 11 C -0.583 4.583 12 H 0.093 0.907 13 C -0.118 4.118 14 N -0.529 5.529 15 Si 0.703 3.297 16 H -0.216 1.216 17 H -0.234 1.234 18 H -0.141 1.141 19 O -0.311 6.311 20 C -0.058 4.058 21 C -0.168 4.168 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.235 -0.973 -4.805 16.959 hybrid contribution -0.352 0.115 0.716 0.806 sum -16.587 -0.858 -4.089 17.105 Atomic orbital electron populations 1.22967 0.79095 1.03383 1.01070 1.86055 1.20818 1.27440 1.89158 1.18973 0.92302 0.83778 0.97460 1.21042 0.99276 0.92585 1.11357 1.20834 0.94670 0.96544 0.98201 1.21043 0.93326 0.98518 1.03476 1.19900 0.96721 0.91722 0.93143 1.21245 0.88653 1.02874 1.00674 1.19363 0.93044 0.84007 0.86440 1.22026 0.99269 0.97685 1.00204 1.21265 0.88890 1.53310 0.94802 0.90737 1.24949 0.94499 0.92658 0.99675 1.69938 1.06595 1.48781 1.27574 0.87174 0.82805 0.77528 0.82166 1.21605 1.23400 1.14118 1.88005 1.75383 1.13848 1.53830 1.22408 1.00854 0.86583 0.95970 1.20348 0.90908 0.98552 1.06969 0.93004 0.88672 0.92921 0.86303 0.86448 0.85945 0.90619 0.90934 0.91885 0.93612 0.93870 0.92593 0.92951 0.95710 0.92662 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.64 10.50 -19.44 -0.20 -4.84 16 3 C 0.12 1.88 6.69 -39.22 -0.26 1.62 16 4 C -0.22 -3.16 9.04 -39.43 -0.36 -3.51 16 5 C -0.08 -1.21 10.04 -39.60 -0.40 -1.61 16 6 C -0.15 -2.39 8.97 -39.56 -0.35 -2.75 16 7 C -0.01 -0.26 4.35 -104.65 -0.45 -0.72 16 8 C -0.10 -1.91 4.04 -27.89 -0.11 -2.02 16 9 C 0.21 4.82 0.37 -91.77 -0.03 4.78 16 10 C -0.14 -3.01 7.75 37.16 0.29 -2.72 16 11 C -0.55 -14.76 7.37 -34.44 -0.25 -15.01 16 12 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 13 C 0.09 2.46 5.45 -17.82 -0.10 2.36 16 14 N -0.89 -26.96 13.96 55.43 0.77 -26.18 16 15 Si 0.87 22.35 23.91 -169.99 -4.06 18.28 16 16 H -0.29 -7.30 6.87 56.52 0.39 -6.92 16 17 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 18 H -0.22 -5.47 5.30 56.52 0.30 -5.17 16 19 O -0.39 -9.01 6.49 -35.23 -0.23 -9.24 16 20 C 0.04 0.78 9.79 101.05 0.99 1.77 16 21 C -0.15 -2.57 7.80 -39.43 -0.31 -2.88 16 22 H 0.05 0.43 7.66 -51.92 -0.40 0.04 16 23 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 25 H 0.12 1.34 6.30 -52.48 -0.33 1.01 16 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.12 1.92 5.90 -52.49 -0.31 1.61 16 28 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 29 H 0.07 1.40 6.49 -51.93 -0.34 1.06 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 32 H 0.04 0.89 6.16 -51.93 -0.32 0.57 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.05 1.17 7.15 -51.93 -0.37 0.80 16 35 H 0.02 0.44 4.50 -51.93 -0.23 0.21 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.13 2.15 8.01 -52.49 -0.42 1.73 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -31.13 285.59 -4.85 -35.98 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.07 Total: 1.11 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.36 Total: -19.41 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.18 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.43 Total: -14.08 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.06 Total: 18.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.13 -4.85 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.300 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds