Wall clock time and date at job start Mon Mar 30 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11180 * 0.25948 * 6 5 4 8 8 C 1.50696 * 119.97243 * 179.70308 * 7 6 5 9 9 C 1.52997 * 109.47496 * 89.99153 * 8 7 6 10 10 C 1.53005 * 109.47056 * 60.00439 * 9 8 7 11 11 C 1.50705 * 109.47494 * 179.97438 * 9 8 7 12 12 H 1.08003 * 119.99646 * 0.02562 * 11 9 8 13 13 C 1.37880 * 120.00236 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99764 * 180.02562 * 13 11 9 15 15 Si 1.86804 * 119.99803 * 0.02562 * 13 11 9 16 16 H 1.48501 * 109.46826 * 89.99741 * 15 13 11 17 17 H 1.48493 * 109.46756 * 209.99255 * 15 13 11 18 18 H 1.48501 * 109.47032 * 330.00014 * 15 13 11 19 19 O 1.42899 * 109.47513 * 300.00178 * 9 8 7 20 20 C 1.42903 * 113.99888 * 300.00110 * 19 9 8 21 21 C 1.38173 * 120.05599 * 359.44059 * 7 6 5 22 22 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 23 23 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 25 25 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 26 26 H 1.07998 * 119.97579 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.93997 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.47405 * 209.99619 * 8 7 6 29 29 H 1.09005 * 109.46844 * 329.99294 * 8 7 6 30 30 H 1.08996 * 109.47050 * 59.99667 * 10 9 8 31 31 H 1.09002 * 109.47378 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.46437 * 300.00093 * 10 9 8 33 33 H 0.97001 * 119.99633 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46865 * 299.99514 * 20 19 9 35 35 H 1.08998 * 109.46920 * 59.99839 * 20 19 9 36 36 H 1.08993 * 109.46709 * 179.97438 * 20 19 9 37 37 H 1.08001 * 120.02637 * 180.25972 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0081 8 6 5.5607 2.5981 -0.0166 9 6 6.0783 2.6231 1.4229 10 6 5.6405 1.3469 2.1445 11 6 7.5832 2.7035 1.4144 12 1 8.1170 2.7342 0.4760 13 6 8.2784 2.7389 2.6046 14 7 9.5916 2.8096 2.5970 15 14 7.3551 2.6866 4.2276 16 1 7.1856 1.2746 4.6553 17 1 8.1249 3.4272 5.2591 18 1 6.0208 3.3161 4.0585 19 8 5.5439 3.7613 2.1017 20 6 5.8954 5.0116 1.5055 21 6 3.4311 1.2847 -0.0013 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2127 2.3203 0.0017 26 1 1.3340 4.5114 0.0008 27 1 3.7922 4.6381 -0.0024 28 1 5.9684 1.7299 -0.5343 29 1 5.8726 3.5073 -0.5307 30 1 6.0481 0.4787 1.6268 31 1 6.0088 1.3648 3.1703 32 1 4.5520 1.2883 2.1507 33 1 10.0808 2.8342 3.4343 34 1 6.9800 5.1198 1.5011 35 1 5.5228 5.0434 0.4817 36 1 5.4511 5.8251 2.0789 37 1 4.0206 0.3798 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:58 Heat of formation + Delta-G solvation = -68.447071 kcal Electronic energy + Delta-G solvation = -19033.308605 eV Core-core repulsion = 16161.911846 eV Total energy + Delta-G solvation = -2871.396759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16069 -39.75335 -37.98740 -34.77961 -33.94508 -31.61783 -31.30559 -28.19091 -27.94622 -27.00227 -26.68412 -23.37408 -22.62815 -20.88213 -19.02114 -18.38322 -17.31044 -17.12362 -16.93706 -16.56092 -16.33504 -15.83410 -15.32722 -14.99321 -14.59398 -14.53862 -14.36642 -13.88855 -13.62878 -13.17459 -12.99730 -12.83233 -12.65193 -12.53419 -12.22222 -12.12261 -12.00300 -11.78158 -11.67492 -11.40252 -10.78732 -10.74399 -9.92887 -9.47965 -9.02925 -8.33722 -6.43948 0.47715 0.60443 1.33900 1.42315 1.68948 2.40443 2.44141 2.90424 3.01143 3.46850 3.96464 3.96811 4.18570 4.33800 4.37685 4.40890 4.43808 4.48963 4.63217 4.73633 4.75426 4.77127 4.80208 4.89424 4.95424 5.05641 5.11754 5.16970 5.24318 5.42534 5.52583 5.58440 5.62817 5.84877 5.94655 6.09337 6.55708 6.64689 6.86904 7.33682 8.80730 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.006795 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.103433 B = 4119.955239 C = 4408.330567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.115 3.885 4 C -0.217 4.217 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.031 4.031 8 C -0.088 4.088 9 C 0.210 3.790 10 C -0.133 4.133 11 C -0.537 4.537 12 H 0.040 0.960 13 C 0.038 3.962 14 N -0.939 5.939 15 Si 0.926 3.074 16 H -0.284 1.284 17 H -0.312 1.312 18 H -0.206 1.206 19 O -0.400 6.400 20 C 0.036 3.964 21 C -0.169 4.169 22 H 0.066 0.934 23 H 0.117 0.883 24 H 0.063 0.937 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.265 0.735 34 H 0.021 0.979 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.986 -0.404 -4.969 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.070 3.930 4 C -0.235 4.235 5 C -0.097 4.097 6 C -0.177 4.177 7 C -0.031 4.031 8 C -0.126 4.126 9 C 0.171 3.829 10 C -0.189 4.189 11 C -0.575 4.575 12 H 0.058 0.942 13 C -0.161 4.161 14 N -0.578 5.578 15 Si 0.755 3.245 16 H -0.212 1.212 17 H -0.241 1.241 18 H -0.128 1.128 19 O -0.320 6.320 20 C -0.060 4.060 21 C -0.188 4.188 22 H 0.085 0.915 23 H 0.135 0.865 24 H 0.081 0.919 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.898 -0.609 -4.734 20.463 hybrid contribution 0.684 -0.012 0.571 0.891 sum -19.215 -0.621 -4.163 19.670 Atomic orbital electron populations 1.23322 0.76530 1.05396 1.02252 1.86036 1.23486 1.27016 1.88926 1.19070 0.91988 0.84971 0.97006 1.21427 1.00918 0.91741 1.09428 1.21203 0.93961 0.98051 0.96474 1.21180 0.94491 0.98009 1.03989 1.19671 0.95201 0.92821 0.95440 1.21016 0.90727 1.02579 0.98274 1.19266 0.90334 0.84490 0.88768 1.21989 1.00376 0.97462 0.99119 1.21542 0.91424 1.51398 0.93112 0.94188 1.25637 0.94937 0.92824 1.02744 1.70056 1.08154 1.51366 1.28236 0.86352 0.82030 0.77597 0.78571 1.21191 1.24084 1.12817 1.87939 1.75025 1.14541 1.54468 1.22548 0.99230 0.86270 0.97930 1.20360 0.92095 0.98059 1.08236 0.91496 0.86512 0.91880 0.83056 0.83148 0.85598 0.91159 0.91139 0.91493 0.94991 0.92137 0.92641 0.95989 0.93522 0.89684 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.97 10.50 -92.47 -0.97 -9.94 16 3 C 0.11 3.32 6.69 22.50 0.15 3.47 16 4 C -0.22 -5.22 9.04 22.36 0.20 -5.02 16 5 C -0.08 -1.95 10.04 22.25 0.22 -1.73 16 6 C -0.16 -4.79 8.97 22.28 0.20 -4.59 16 7 C -0.03 -1.07 4.35 -19.88 -0.09 -1.16 16 8 C -0.09 -3.48 4.04 29.85 0.12 -3.36 16 9 C 0.21 9.59 0.37 -11.54 0.00 9.59 16 10 C -0.13 -5.82 7.75 71.98 0.56 -5.26 16 11 C -0.54 -29.80 7.37 25.60 0.19 -29.61 16 12 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 13 C 0.04 2.21 5.45 84.66 0.46 2.67 16 14 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 15 Si 0.93 46.50 23.91 68.60 1.64 48.14 16 16 H -0.28 -13.97 6.87 99.48 0.68 -13.29 16 17 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 18 H -0.21 -9.85 5.30 99.48 0.53 -9.32 16 19 O -0.40 -17.86 6.49 -148.98 -0.97 -18.83 16 20 C 0.04 1.42 9.79 113.37 1.11 2.53 16 21 C -0.17 -5.60 7.80 22.37 0.17 -5.43 16 22 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 23 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 25 H 0.15 2.60 6.30 -2.91 -0.02 2.59 16 26 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 27 H 0.13 3.62 5.90 -2.91 -0.02 3.60 16 28 H 0.07 2.76 8.09 -2.39 -0.02 2.74 16 29 H 0.07 2.72 6.49 -2.38 -0.02 2.71 16 30 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 32 H 0.06 2.43 6.16 -2.39 -0.01 2.41 16 33 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.02 0.97 7.15 -2.39 -0.02 0.96 16 35 H 0.05 1.60 4.50 -2.39 -0.01 1.59 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.12 4.03 8.01 -2.91 -0.02 4.00 16 Total: -1.00 -67.84 285.59 5.27 -62.56 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.86 Total: 12.80 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 4.41 Total: -36.49 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.30 Total: -58.25 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.94 Total: -28.76 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.64 Total: 48.14 kcal Total: -67.84 5.27 -62.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.883 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds