Wall clock time and date at job start Mon Mar 30 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35891 * 117.00285 * 2 1 4 4 C 1.38762 * 120.05239 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94236 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05667 * 359.74003 * 5 4 3 7 7 C 1.38244 * 120.10918 * 0.51611 * 6 5 4 8 8 C 1.50700 * 119.96883 * 179.76715 * 7 6 5 9 9 C 1.53001 * 109.46971 * 269.71884 * 8 7 6 10 10 C 1.52999 * 109.47329 * 305.00298 * 9 8 7 11 11 C 1.50701 * 109.46986 * 185.00486 * 9 8 7 12 12 H 1.07999 * 120.00192 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99779 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00009 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99748 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46942 * 60.00123 * 15 13 11 17 17 H 1.48502 * 109.46586 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47512 * 299.99884 * 15 13 11 19 19 O 1.42899 * 109.47010 * 65.00070 * 9 8 7 20 20 C 1.42905 * 113.99778 * 60.00277 * 19 9 8 21 21 C 1.38165 * 120.05521 * 359.48463 * 7 6 5 22 22 H 1.09001 * 109.46925 * 299.99676 * 1 2 3 23 23 H 1.08996 * 109.46669 * 60.00273 * 1 2 3 24 24 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.02910 * 359.95242 * 4 3 2 26 26 H 1.08005 * 119.97478 * 180.02562 * 5 4 3 27 27 H 1.07995 * 119.94327 * 180.28030 * 6 5 4 28 28 H 1.09006 * 109.47061 * 149.71849 * 8 7 6 29 29 H 1.09000 * 109.47538 * 29.71914 * 8 7 6 30 30 H 1.08997 * 109.47286 * 179.97438 * 10 9 8 31 31 H 1.09010 * 109.47076 * 299.99946 * 10 9 8 32 32 H 1.09008 * 109.47201 * 59.99610 * 10 9 8 33 33 H 0.97002 * 120.00232 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47103 * 180.02562 * 20 19 9 35 35 H 1.09004 * 109.47054 * 299.99711 * 20 19 9 36 36 H 1.09000 * 109.47187 * 59.99767 * 20 19 9 37 37 H 1.08003 * 120.02387 * 180.23624 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0065 7 6 4.0560 2.5170 0.0006 8 6 5.5609 2.5981 0.0013 9 6 6.0707 2.6259 -1.4410 10 6 5.5254 1.4135 -2.1982 11 6 7.5771 2.5830 -1.4422 12 1 8.1168 2.5406 -0.5078 13 6 8.2662 2.5990 -2.6364 14 7 7.6089 2.6511 -3.7742 15 14 10.1335 2.5465 -2.6378 16 1 10.5941 1.3004 -1.9744 17 1 10.6282 2.5734 -4.0377 18 1 10.6624 3.7233 -1.9027 19 8 5.6277 3.8250 -2.0797 20 6 6.0842 5.0228 -1.4480 21 6 3.4312 1.2847 0.0001 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2129 2.3203 0.0002 26 1 1.3341 4.5114 0.0019 27 1 3.7923 4.6379 0.0115 28 1 5.9714 1.7288 0.5151 29 1 5.8756 3.5062 0.5155 30 1 5.8882 1.4335 -3.2258 31 1 5.8632 0.4987 -1.7110 32 1 4.4357 1.4444 -2.1973 33 1 8.0937 2.6627 -4.6143 34 1 5.7050 5.8878 -1.9921 35 1 5.7213 5.0527 -0.4206 36 1 7.1740 5.0415 -1.4490 37 1 4.0207 0.3798 -0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261360609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:01 Heat of formation + Delta-G solvation = -58.397775 kcal Electronic energy + Delta-G solvation = -18908.254519 eV Core-core repulsion = 16037.293530 eV Total energy + Delta-G solvation = -2870.960989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84598 -37.95532 -36.38455 -32.70933 -32.08693 -30.10831 -29.24776 -27.10785 -26.17372 -25.03497 -24.66063 -22.06521 -21.12396 -19.17843 -17.22816 -16.60344 -15.89039 -15.62247 -15.55328 -14.77503 -14.39112 -13.81669 -13.77497 -13.47467 -13.24387 -12.78027 -12.53206 -12.19608 -11.77567 -11.43379 -11.21398 -10.98697 -10.89267 -10.86099 -10.72049 -10.52867 -10.34819 -10.15631 -10.09333 -9.63733 -8.87122 -8.50445 -8.22666 -7.84404 -7.63840 -5.93946 -4.14093 1.80963 1.91454 3.29843 3.35517 3.37422 3.49824 4.23346 4.41243 5.03261 5.18004 5.20322 5.22654 5.27288 5.46608 5.56215 5.64014 5.83028 5.90590 6.02171 6.24104 6.43049 6.48354 6.54235 6.65074 6.68505 6.82898 6.88428 7.03372 7.06459 7.16791 7.24509 7.27666 7.55364 7.73641 7.78133 8.08881 8.31764 8.82312 9.12892 9.59118 11.05150 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035449 B = 0.006069 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.670145 B = 4612.565886 C = 4999.884113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.226 4.226 5 C -0.085 4.085 6 C -0.146 4.146 7 C -0.009 4.009 8 C -0.110 4.110 9 C 0.246 3.754 10 C -0.125 4.125 11 C -0.556 4.556 12 H 0.055 0.945 13 C 0.083 3.917 14 N -0.855 5.855 15 Si 0.885 3.115 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.371 6.371 20 C 0.049 3.951 21 C -0.147 4.147 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.022 0.978 33 H 0.260 0.740 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.041 0.959 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -0.609 6.918 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.074 3.926 4 C -0.245 4.245 5 C -0.103 4.103 6 C -0.164 4.164 7 C -0.009 4.009 8 C -0.147 4.147 9 C 0.208 3.792 10 C -0.182 4.182 11 C -0.593 4.593 12 H 0.073 0.927 13 C -0.123 4.123 14 N -0.491 5.491 15 Si 0.713 3.287 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 O -0.290 6.290 20 C -0.048 4.048 21 C -0.165 4.165 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.094 -0.811 6.538 12.903 hybrid contribution 0.949 0.205 0.154 0.983 sum -10.145 -0.606 6.692 12.168 Atomic orbital electron populations 1.22955 0.79216 1.03279 1.01034 1.86051 1.20721 1.27515 1.89213 1.18968 0.92306 0.83716 0.97585 1.21010 0.99171 0.92591 1.11692 1.20813 0.94666 0.96487 0.98345 1.20971 0.93284 0.98411 1.03717 1.19889 0.96815 0.91620 0.92565 1.21492 0.88832 1.02015 1.02386 1.18935 0.92179 0.83535 0.84571 1.21683 0.96876 0.95608 1.04048 1.21417 0.91168 1.54118 0.92632 0.92715 1.24958 0.97850 0.93883 0.95610 1.69987 1.34871 1.47034 0.97178 0.86789 0.86203 0.78680 0.77047 1.20179 1.21231 1.20258 1.87904 1.73483 1.13018 1.54553 1.22247 0.99477 0.88326 0.94779 1.20324 0.90820 0.98550 1.06849 0.93080 0.92928 0.88757 0.86401 0.86554 0.86228 0.91194 0.91579 0.89447 0.94378 0.95910 0.92996 0.93240 0.96833 0.94026 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.97 10.50 -19.40 -0.20 -5.17 16 3 C 0.12 2.01 6.69 -39.21 -0.26 1.75 16 4 C -0.23 -3.44 9.04 -39.43 -0.36 -3.80 16 5 C -0.08 -1.32 10.04 -39.60 -0.40 -1.72 16 6 C -0.15 -2.59 9.40 -39.56 -0.37 -2.97 16 7 C -0.01 -0.17 4.24 -104.65 -0.44 -0.61 16 8 C -0.11 -2.30 4.16 -27.88 -0.12 -2.42 16 9 C 0.25 6.04 0.41 -91.77 -0.04 6.00 16 10 C -0.12 -3.08 7.85 37.16 0.29 -2.79 16 11 C -0.56 -14.76 6.76 -34.44 -0.23 -15.00 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.24 5.24 -17.82 -0.09 2.15 16 14 N -0.86 -24.18 10.87 55.43 0.60 -23.58 16 15 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 O -0.37 -9.44 9.25 -35.23 -0.33 -9.76 16 20 C 0.05 1.07 10.10 101.05 1.02 2.09 16 21 C -0.15 -2.73 7.78 -39.44 -0.31 -3.04 16 22 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 23 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 26 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 27 H 0.12 2.06 6.48 -52.49 -0.34 1.72 16 28 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 29 H 0.07 1.34 6.23 -51.93 -0.32 1.01 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 31 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.02 0.53 6.14 -51.92 -0.32 0.21 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.01 0.26 4.97 -51.93 -0.26 0.00 16 36 H 0.04 0.97 7.15 -51.93 -0.37 0.60 16 37 H 0.13 2.33 8.03 -52.48 -0.42 1.90 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -29.80 296.32 -5.92 -35.72 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.13 Total: 1.57 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -0.31 Total: -19.04 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.60 Total: -23.58 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.53 Total: -14.94 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.80 -5.92 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.679 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds