Wall clock time and date at job start Mon Mar 30 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35891 * 117.00285 * 2 1 4 4 C 1.38762 * 120.05239 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94236 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05667 * 359.74003 * 5 4 3 7 7 C 1.38244 * 120.10918 * 0.51611 * 6 5 4 8 8 C 1.50700 * 119.96883 * 179.76715 * 7 6 5 9 9 C 1.53001 * 109.46971 * 269.71884 * 8 7 6 10 10 C 1.52999 * 109.47329 * 305.00298 * 9 8 7 11 11 C 1.50701 * 109.46986 * 185.00486 * 9 8 7 12 12 H 1.07999 * 120.00192 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99779 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00009 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99748 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46942 * 60.00123 * 15 13 11 17 17 H 1.48502 * 109.46586 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47512 * 299.99884 * 15 13 11 19 19 O 1.42899 * 109.47010 * 65.00070 * 9 8 7 20 20 C 1.42905 * 113.99778 * 60.00277 * 19 9 8 21 21 C 1.38165 * 120.05521 * 359.48463 * 7 6 5 22 22 H 1.09001 * 109.46925 * 299.99676 * 1 2 3 23 23 H 1.08996 * 109.46669 * 60.00273 * 1 2 3 24 24 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.02910 * 359.95242 * 4 3 2 26 26 H 1.08005 * 119.97478 * 180.02562 * 5 4 3 27 27 H 1.07995 * 119.94327 * 180.28030 * 6 5 4 28 28 H 1.09006 * 109.47061 * 149.71849 * 8 7 6 29 29 H 1.09000 * 109.47538 * 29.71914 * 8 7 6 30 30 H 1.08997 * 109.47286 * 179.97438 * 10 9 8 31 31 H 1.09010 * 109.47076 * 299.99946 * 10 9 8 32 32 H 1.09008 * 109.47201 * 59.99610 * 10 9 8 33 33 H 0.97002 * 120.00232 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47103 * 180.02562 * 20 19 9 35 35 H 1.09004 * 109.47054 * 299.99711 * 20 19 9 36 36 H 1.09000 * 109.47187 * 59.99767 * 20 19 9 37 37 H 1.08003 * 120.02387 * 180.23624 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0065 7 6 4.0560 2.5170 0.0006 8 6 5.5609 2.5981 0.0013 9 6 6.0707 2.6259 -1.4410 10 6 5.5254 1.4135 -2.1982 11 6 7.5771 2.5830 -1.4422 12 1 8.1168 2.5406 -0.5078 13 6 8.2662 2.5990 -2.6364 14 7 7.6089 2.6511 -3.7742 15 14 10.1335 2.5465 -2.6378 16 1 10.5941 1.3004 -1.9744 17 1 10.6282 2.5734 -4.0377 18 1 10.6624 3.7233 -1.9027 19 8 5.6277 3.8250 -2.0797 20 6 6.0842 5.0228 -1.4480 21 6 3.4312 1.2847 0.0001 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2129 2.3203 0.0002 26 1 1.3341 4.5114 0.0019 27 1 3.7923 4.6379 0.0115 28 1 5.9714 1.7288 0.5151 29 1 5.8756 3.5062 0.5155 30 1 5.8882 1.4335 -3.2258 31 1 5.8632 0.4987 -1.7110 32 1 4.4357 1.4444 -2.1973 33 1 8.0937 2.6627 -4.6143 34 1 5.7050 5.8878 -1.9921 35 1 5.7213 5.0527 -0.4206 36 1 7.1740 5.0415 -1.4490 37 1 4.0207 0.3798 -0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:00 Heat of formation + Delta-G solvation = -75.955077 kcal Electronic energy + Delta-G solvation = -18909.015861 eV Core-core repulsion = 16037.293530 eV Total energy + Delta-G solvation = -2871.722331 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10361 -39.49517 -37.87625 -34.65044 -33.75339 -31.37111 -30.91292 -28.11449 -27.91790 -26.82957 -26.52985 -23.34609 -22.58874 -20.84911 -18.71917 -18.34158 -17.09203 -16.95602 -16.76360 -16.54011 -16.17868 -15.52950 -15.49301 -14.89771 -14.56635 -14.31406 -13.98647 -13.63151 -13.09678 -13.03227 -12.87727 -12.72201 -12.65779 -12.52642 -12.22665 -12.13119 -11.96510 -11.90922 -11.68886 -11.38759 -10.69506 -10.54957 -9.89065 -9.41359 -9.01715 -7.98726 -6.25270 0.50469 0.61666 1.42584 1.43464 1.50557 2.42355 2.46027 2.93222 3.17891 3.74757 3.97846 4.01865 4.23093 4.37379 4.44031 4.48481 4.52928 4.64341 4.69702 4.75438 4.80339 4.86062 4.96273 5.09004 5.11403 5.18029 5.21692 5.32352 5.44361 5.55376 5.59696 5.68506 5.85447 5.94315 6.10671 6.28816 6.56809 6.79543 7.21691 7.53289 8.98805 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035449 B = 0.006069 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.670145 B = 4612.565886 C = 4999.884113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.114 3.886 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.161 4.161 7 C -0.028 4.028 8 C -0.099 4.099 9 C 0.240 3.760 10 C -0.113 4.113 11 C -0.567 4.567 12 H 0.051 0.949 13 C 0.038 3.962 14 N -0.885 5.885 15 Si 0.943 3.057 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.272 1.272 19 O -0.394 6.394 20 C 0.050 3.950 21 C -0.169 4.169 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.027 0.973 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 -0.096 7.788 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.069 3.931 4 C -0.237 4.237 5 C -0.098 4.098 6 C -0.179 4.179 7 C -0.028 4.028 8 C -0.137 4.137 9 C 0.202 3.798 10 C -0.170 4.170 11 C -0.605 4.605 12 H 0.070 0.930 13 C -0.164 4.164 14 N -0.521 5.521 15 Si 0.769 3.231 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.197 1.197 19 O -0.313 6.313 20 C -0.047 4.047 21 C -0.188 4.188 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.136 0.864 25 H 0.171 0.829 26 H 0.169 0.831 27 H 0.140 0.860 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.742 -0.302 7.425 14.751 hybrid contribution 1.325 0.014 -0.086 1.328 sum -11.418 -0.288 7.339 13.576 Atomic orbital electron populations 1.23329 0.76506 1.05421 1.02248 1.86031 1.23534 1.26996 1.88950 1.19066 0.91946 0.85012 0.97027 1.21405 1.00890 0.91668 1.09754 1.21202 0.93936 0.98088 0.96550 1.21108 0.94528 0.97848 1.04387 1.19744 0.95704 0.92681 0.94685 1.21246 0.90586 1.01955 0.99892 1.18930 0.91268 0.83176 0.86461 1.21534 0.97033 0.96244 1.02228 1.21738 0.92675 1.53566 0.92484 0.93028 1.25632 1.01792 0.93688 0.95332 1.70128 1.36263 1.48217 0.97532 0.85864 0.81457 0.78808 0.76956 1.19699 1.21142 1.19719 1.87841 1.73697 1.14038 1.55751 1.22336 0.98153 0.87820 0.96378 1.20323 0.92102 0.97971 1.08371 0.91383 0.92002 0.86418 0.82938 0.83124 0.86009 0.91564 0.91295 0.92441 0.94207 0.95402 0.93265 0.91224 0.94517 0.96235 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.95 10.50 -92.32 -0.97 -10.91 16 3 C 0.11 3.70 6.69 22.51 0.15 3.85 16 4 C -0.22 -5.95 9.04 22.37 0.20 -5.75 16 5 C -0.08 -2.24 10.04 22.25 0.22 -2.02 16 6 C -0.16 -5.46 9.40 22.28 0.21 -5.25 16 7 C -0.03 -1.07 4.24 -19.88 -0.08 -1.16 16 8 C -0.10 -4.19 4.16 29.85 0.12 -4.07 16 9 C 0.24 11.94 0.41 -11.54 0.00 11.93 16 10 C -0.11 -5.73 7.85 71.98 0.57 -5.16 16 11 C -0.57 -30.53 6.76 25.60 0.17 -30.35 16 12 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 13 C 0.04 2.10 5.24 84.66 0.44 2.55 16 14 N -0.88 -51.03 10.87 21.45 0.23 -50.80 16 15 Si 0.94 43.11 29.54 68.60 2.03 45.14 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 O -0.39 -20.16 9.25 -148.98 -1.38 -21.53 16 20 C 0.05 2.16 10.10 113.37 1.15 3.31 16 21 C -0.17 -6.28 7.78 22.36 0.17 -6.11 16 22 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 23 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.15 3.03 6.30 -2.91 -0.02 3.01 16 26 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.12 3.98 6.48 -2.91 -0.02 3.97 16 28 H 0.07 2.76 8.09 -2.38 -0.02 2.74 16 29 H 0.07 2.79 6.23 -2.39 -0.01 2.77 16 30 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.90 16 32 H 0.03 1.33 6.14 -2.38 -0.01 1.31 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.04 1.40 4.97 -2.38 -0.01 1.38 16 36 H 0.02 0.91 7.15 -2.39 -0.02 0.89 16 37 H 0.12 4.38 8.03 -2.91 -0.02 4.35 16 Total: -1.00 -64.34 296.32 5.40 -58.94 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.06 Total: 15.95 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 4.43 Total: -36.78 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.23 Total: -50.80 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -2.35 Total: -32.45 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.34 5.40 -58.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.018 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds