Wall clock time and date at job start Mon Mar 30 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47317 * 119.99914 * 2 1 3 5 5 H 1.08997 * 109.46902 * 299.99992 * 4 2 1 6 6 O 1.42896 * 109.46942 * 59.99715 * 4 2 1 7 7 C 1.53001 * 109.47317 * 179.97438 * 4 2 1 8 8 O 1.42899 * 109.46898 * 175.00306 * 7 4 2 9 9 C 1.35678 * 116.99923 * 180.02562 * 8 7 4 10 10 C 1.39311 * 119.81534 * 359.72174 * 9 8 7 11 11 C 1.36437 * 120.18393 * 179.76114 * 10 9 8 12 12 C 1.40834 * 119.80852 * 0.51378 * 11 10 9 13 13 C 1.41216 * 120.17587 * 179.71934 * 12 11 10 14 14 H 1.07998 * 120.00349 * 24.56067 * 13 12 11 15 15 C 1.39891 * 119.99889 * 204.56627 * 13 12 11 16 16 N 1.30877 * 120.00098 * 17.93902 * 15 13 12 17 17 Si 1.86804 * 120.00040 * 197.94662 * 15 13 12 18 18 H 1.48497 * 109.47159 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47284 * 120.00036 * 17 15 13 20 20 H 1.48505 * 109.46619 * 239.99863 * 17 15 13 21 21 C 1.40826 * 119.64333 * 359.74055 * 12 11 10 22 22 C 1.36435 * 119.81349 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.47128 * 300.00232 * 1 2 3 24 24 H 1.08999 * 109.47045 * 59.99953 * 1 2 3 25 25 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47224 * 240.00371 * 2 1 3 27 27 H 1.09006 * 109.47266 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47151 * 299.99982 * 3 2 1 29 29 H 1.08997 * 109.47261 * 59.99850 * 3 2 1 30 30 H 0.96701 * 114.00170 * 60.00432 * 6 4 2 31 31 H 1.09001 * 109.46964 * 295.00300 * 7 4 2 32 32 H 1.08995 * 109.46742 * 55.00281 * 7 4 2 33 33 H 1.08003 * 119.90804 * 0.02562 * 10 9 8 34 34 H 1.08003 * 120.09666 * 180.25315 * 11 10 9 35 35 H 0.97002 * 120.00329 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.09466 * 179.97438 * 21 12 11 37 37 H 1.07998 * 119.91007 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 8 1.5637 -2.0685 1.2493 7 6 3.5701 -0.7218 1.2489 8 8 4.0464 -1.2912 2.4699 9 6 5.3915 -1.3663 2.6310 10 6 6.2365 -0.9036 1.6248 11 6 7.5903 -0.9710 1.7810 12 6 8.1326 -1.5203 2.9589 13 6 9.5326 -1.5993 3.1261 14 1 10.1797 -0.9211 2.5898 15 6 10.0814 -2.5563 3.9864 16 7 9.3666 -3.5871 4.3597 17 14 11.8342 -2.3627 4.6025 18 1 12.4232 -1.1220 4.0377 19 1 11.8314 -2.2795 6.0851 20 1 12.6415 -3.5331 4.1739 21 6 7.2713 -1.9907 3.9689 22 6 5.9199 -1.9116 3.7991 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.8490 -2.5866 0.4843 31 1 3.9330 -1.3115 0.4071 32 1 3.9337 0.3018 1.1592 33 1 5.8189 -0.4863 0.7204 34 1 8.2441 -0.6081 1.0017 35 1 9.7472 -4.2509 4.9559 36 1 7.6794 -2.4137 4.8750 37 1 5.2579 -2.2722 4.5724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300857029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:37 Heat of formation + Delta-G solvation = -88.733161 kcal Electronic energy + Delta-G solvation = -17875.688417 eV Core-core repulsion = 15003.411987 eV Total energy + Delta-G solvation = -2872.276430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.20700 -37.88426 -36.10084 -34.25021 -33.29859 -30.04139 -29.16365 -28.51445 -27.02457 -24.80353 -23.41782 -20.98182 -20.54996 -20.39430 -17.34492 -17.06789 -16.55007 -15.87667 -15.21319 -14.93163 -14.57779 -13.97605 -13.89576 -13.46357 -13.04613 -12.87638 -12.39052 -12.19739 -12.13218 -12.09758 -11.76322 -11.47542 -11.32771 -11.12888 -11.08600 -10.85714 -10.64430 -10.48632 -9.94653 -9.84257 -9.74585 -9.31600 -9.00773 -7.63091 -7.01398 -6.71139 -4.24291 2.78092 2.96238 3.09508 3.14687 3.21460 3.87336 3.96362 4.41166 4.62862 4.70906 4.82949 4.98332 5.21851 5.29734 5.46768 5.48696 5.61891 5.67406 5.68530 5.76148 5.84886 5.96315 6.07769 6.13152 6.21660 6.25259 6.74591 6.99070 7.12433 7.19950 7.47865 7.56999 7.69283 7.80785 8.01950 8.21788 8.47500 8.67135 8.91157 9.00271 10.23239 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057775 B = 0.003997 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.526042 B = 7003.193020 C = 7314.845068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.153 4.153 4 C 0.114 3.886 5 H 0.104 0.896 6 O -0.552 6.552 7 C 0.035 3.965 8 O -0.319 6.319 9 C -0.008 4.008 10 C -0.169 4.169 11 C -0.199 4.199 12 C 0.087 3.913 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.799 5.799 17 Si 0.907 3.093 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.133 4.133 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.371 0.629 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.279 0.721 36 H 0.126 0.874 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 5.272 -6.483 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.210 4.210 4 C 0.055 3.945 5 H 0.122 0.878 6 O -0.356 6.356 7 C -0.042 4.042 8 O -0.235 6.235 9 C -0.052 4.052 10 C -0.187 4.187 11 C -0.218 4.218 12 C 0.085 3.915 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.425 5.425 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.201 1.201 21 C -0.153 4.153 22 C -0.139 4.139 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.218 0.782 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.169 5.187 -5.653 13.550 hybrid contribution 1.280 -0.065 -0.551 1.395 sum -9.889 5.123 -6.204 12.749 Atomic orbital electron populations 1.21735 0.94169 1.02381 1.01535 1.21752 0.97073 0.97184 0.98328 1.21915 1.01619 0.95302 1.02176 1.22000 0.90932 0.83313 0.98284 0.87809 1.86608 1.76345 1.23071 1.49601 1.23288 0.94617 0.98378 0.87909 1.85888 1.20956 1.79572 1.37090 1.18640 0.80366 1.08567 0.97584 1.20394 0.94730 1.05979 0.97644 1.20557 0.93156 1.09935 0.98187 1.17595 0.93643 0.90343 0.89894 1.19487 0.92030 1.15082 1.22802 0.90542 1.25878 1.00012 0.93744 0.94565 1.69843 1.38246 1.07461 1.26932 0.86293 0.82070 0.79305 0.79216 1.18496 1.19742 1.20094 1.20980 0.90712 1.03545 1.00015 1.19848 0.95361 1.03186 0.95472 0.92596 0.92806 0.91936 0.90823 0.91957 0.92346 0.92221 0.78184 0.93155 0.92095 0.88992 0.88785 0.90980 0.85670 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.05 37.16 0.34 -0.93 16 2 C -0.12 -1.23 2.69 -90.62 -0.24 -1.47 16 3 C -0.15 -1.42 8.85 37.16 0.33 -1.09 16 4 C 0.11 1.48 2.83 -26.73 -0.08 1.41 16 5 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 6 O -0.55 -7.65 12.63 -40.11 -0.51 -8.16 16 7 C 0.03 0.55 4.15 37.16 0.15 0.70 16 8 O -0.32 -6.74 10.09 -23.62 -0.24 -6.98 16 9 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 10 C -0.17 -3.87 8.96 -39.83 -0.36 -4.22 16 11 C -0.20 -4.94 9.74 -39.25 -0.38 -5.32 16 12 C 0.09 2.37 5.57 -106.81 -0.60 1.77 16 13 C -0.46 -12.43 9.04 -37.83 -0.34 -12.77 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 15 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 16 N -0.80 -20.87 10.96 55.54 0.61 -20.27 16 17 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 22 C -0.12 -2.98 9.92 -39.83 -0.40 -3.37 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.37 3.89 9.04 45.56 0.41 4.30 16 31 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 32 H 0.06 0.92 5.69 -51.93 -0.30 0.62 16 33 H 0.09 1.82 6.27 -52.48 -0.33 1.49 16 34 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 37 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -29.52 305.86 -7.41 -36.93 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.59 Total: 7.92 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -2.26 Total: -27.82 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.74 Total: -15.13 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.52 -7.41 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300857029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.808 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds