Wall clock time and date at job start Mon Mar 30 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47317 * 119.99914 * 2 1 3 5 5 H 1.08997 * 109.46902 * 299.99992 * 4 2 1 6 6 O 1.42896 * 109.46942 * 59.99715 * 4 2 1 7 7 C 1.53001 * 109.47317 * 179.97438 * 4 2 1 8 8 O 1.42899 * 109.46898 * 175.00306 * 7 4 2 9 9 C 1.35678 * 116.99923 * 180.02562 * 8 7 4 10 10 C 1.39311 * 119.81534 * 359.72174 * 9 8 7 11 11 C 1.36437 * 120.18393 * 179.76114 * 10 9 8 12 12 C 1.40834 * 119.80852 * 0.51378 * 11 10 9 13 13 C 1.41216 * 120.17587 * 179.71934 * 12 11 10 14 14 H 1.07998 * 120.00349 * 24.56067 * 13 12 11 15 15 C 1.39891 * 119.99889 * 204.56627 * 13 12 11 16 16 N 1.30877 * 120.00098 * 17.93902 * 15 13 12 17 17 Si 1.86804 * 120.00040 * 197.94662 * 15 13 12 18 18 H 1.48497 * 109.47159 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47284 * 120.00036 * 17 15 13 20 20 H 1.48505 * 109.46619 * 239.99863 * 17 15 13 21 21 C 1.40826 * 119.64333 * 359.74055 * 12 11 10 22 22 C 1.36435 * 119.81349 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.47128 * 300.00232 * 1 2 3 24 24 H 1.08999 * 109.47045 * 59.99953 * 1 2 3 25 25 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47224 * 240.00371 * 2 1 3 27 27 H 1.09006 * 109.47266 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47151 * 299.99982 * 3 2 1 29 29 H 1.08997 * 109.47261 * 59.99850 * 3 2 1 30 30 H 0.96701 * 114.00170 * 60.00432 * 6 4 2 31 31 H 1.09001 * 109.46964 * 295.00300 * 7 4 2 32 32 H 1.08995 * 109.46742 * 55.00281 * 7 4 2 33 33 H 1.08003 * 119.90804 * 0.02562 * 10 9 8 34 34 H 1.08003 * 120.09666 * 180.25315 * 11 10 9 35 35 H 0.97002 * 120.00329 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.09466 * 179.97438 * 21 12 11 37 37 H 1.07998 * 119.91007 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 8 1.5637 -2.0685 1.2493 7 6 3.5701 -0.7218 1.2489 8 8 4.0464 -1.2912 2.4699 9 6 5.3915 -1.3663 2.6310 10 6 6.2365 -0.9036 1.6248 11 6 7.5903 -0.9710 1.7810 12 6 8.1326 -1.5203 2.9589 13 6 9.5326 -1.5993 3.1261 14 1 10.1797 -0.9211 2.5898 15 6 10.0814 -2.5563 3.9864 16 7 9.3666 -3.5871 4.3597 17 14 11.8342 -2.3627 4.6025 18 1 12.4232 -1.1220 4.0377 19 1 11.8314 -2.2795 6.0851 20 1 12.6415 -3.5331 4.1739 21 6 7.2713 -1.9907 3.9689 22 6 5.9199 -1.9116 3.7991 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.8490 -2.5866 0.4843 31 1 3.9330 -1.3115 0.4071 32 1 3.9337 0.3018 1.1592 33 1 5.8189 -0.4863 0.7204 34 1 8.2441 -0.6081 1.0017 35 1 9.7472 -4.2509 4.9559 36 1 7.6794 -2.4137 4.8750 37 1 5.2579 -2.2722 4.5724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300857029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:37 Heat of formation + Delta-G solvation = -106.796044 kcal Electronic energy + Delta-G solvation = -17876.471682 eV Core-core repulsion = 15003.411987 eV Total energy + Delta-G solvation = -2873.059695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72406 -39.24644 -37.77765 -35.18951 -35.15076 -31.83812 -31.00361 -29.85912 -27.81129 -26.65648 -24.68229 -22.71912 -22.33226 -21.40826 -19.26455 -18.67465 -17.69338 -17.19270 -16.98163 -16.21329 -15.75346 -15.61427 -15.40569 -14.71265 -14.59866 -14.10747 -14.00501 -13.71122 -13.50808 -13.12362 -12.98805 -12.90474 -12.78244 -12.63588 -12.42973 -12.21653 -11.86502 -11.74456 -11.57991 -11.47143 -11.17334 -10.89882 -10.78140 -9.57581 -8.93225 -8.60047 -6.23415 0.93769 1.01344 1.40061 1.50960 1.55489 2.22907 2.50916 2.72123 3.45270 3.69083 3.78759 3.89654 3.98938 4.16588 4.27397 4.30961 4.39125 4.45380 4.66845 4.79791 4.83694 4.89829 4.97922 5.04785 5.06393 5.19196 5.21730 5.27868 5.41642 5.42109 5.58090 5.63770 5.87700 6.05037 6.25344 6.56054 6.77692 6.82749 6.94457 7.09624 8.36752 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057775 B = 0.003997 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.526042 B = 7003.193020 C = 7314.845068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.154 4.154 4 C 0.120 3.880 5 H 0.093 0.907 6 O -0.570 6.570 7 C 0.026 3.974 8 O -0.334 6.334 9 C -0.002 4.002 10 C -0.165 4.165 11 C -0.208 4.208 12 C 0.055 3.945 13 C -0.499 4.499 14 H 0.077 0.923 15 C 0.033 3.967 16 N -0.831 5.831 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.152 4.152 22 C -0.135 4.135 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.385 0.615 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.287 0.713 36 H 0.110 0.890 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 6.050 -7.746 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.211 4.211 4 C 0.060 3.940 5 H 0.111 0.889 6 O -0.376 6.376 7 C -0.050 4.050 8 O -0.250 6.250 9 C -0.045 4.045 10 C -0.183 4.183 11 C -0.228 4.228 12 C 0.053 3.947 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.181 4.181 16 N -0.458 5.458 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.191 1.191 21 C -0.172 4.172 22 C -0.154 4.154 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.234 0.766 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.601 5.966 -6.939 14.776 hybrid contribution 1.230 -0.298 -0.235 1.287 sum -10.371 5.668 -7.175 13.826 Atomic orbital electron populations 1.21722 0.93332 1.02304 1.02248 1.21688 0.97620 0.97187 0.96876 1.21935 1.01163 0.94987 1.03033 1.22010 0.88840 0.83433 0.99669 0.88877 1.86575 1.76479 1.23724 1.50864 1.23701 0.96477 0.98746 0.86073 1.85883 1.19259 1.79899 1.39933 1.18723 0.81809 1.07039 0.96975 1.20688 0.93920 1.05049 0.98681 1.20813 0.94378 1.09699 0.97881 1.17952 0.94295 0.91530 0.90922 1.19743 0.92302 1.16196 1.24655 0.90517 1.26756 1.04500 0.92812 0.94029 1.69897 1.40371 1.08169 1.27399 0.85147 0.76363 0.79439 0.78657 1.18104 1.19008 1.19148 1.20896 0.91547 1.04893 0.99831 1.20015 0.95035 1.03676 0.96665 0.92927 0.91079 0.92425 0.89586 0.92633 0.90634 0.92332 0.76564 0.92161 0.90976 0.85446 0.87522 0.90203 0.87230 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.05 71.98 0.65 -1.48 16 2 C -0.11 -1.95 2.69 -10.79 -0.03 -1.98 16 3 C -0.15 -2.43 8.85 71.98 0.64 -1.80 16 4 C 0.12 2.90 2.83 30.60 0.09 2.98 16 5 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 6 O -0.57 -14.87 12.63 -144.31 -1.82 -16.69 16 7 C 0.03 0.76 4.15 71.98 0.30 1.05 16 8 O -0.33 -13.70 10.09 -85.29 -0.86 -14.56 16 9 C 0.00 -0.07 6.71 22.79 0.15 0.08 16 10 C -0.16 -7.34 8.96 22.11 0.20 -7.14 16 11 C -0.21 -10.31 9.74 22.48 0.22 -10.09 16 12 C 0.06 3.05 5.57 -21.28 -0.12 2.93 16 13 C -0.50 -27.29 9.04 23.40 0.21 -27.08 16 14 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 15 C 0.03 1.68 5.13 85.24 0.44 2.12 16 16 N -0.83 -44.39 10.96 21.82 0.24 -44.16 16 17 Si 0.98 38.65 29.60 68.60 2.03 40.68 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16 22 C -0.14 -6.83 9.92 22.11 0.22 -6.61 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.95 7.68 -2.39 -0.02 0.93 16 26 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.05 0.95 6.32 -2.38 -0.02 0.94 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.39 7.34 9.04 -74.06 -0.67 6.67 16 31 H 0.06 1.67 7.64 -2.39 -0.02 1.66 16 32 H 0.07 1.99 5.69 -2.39 -0.01 1.98 16 33 H 0.13 4.67 6.27 -2.91 -0.02 4.65 16 34 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 36 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -63.72 305.86 3.14 -60.58 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.39 Total: 29.30 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.16 Total: -55.15 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.24 Total: -44.16 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -2.68 Total: -31.26 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -63.72 3.14 -60.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300857029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.213 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds