Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 C 1.53003 * 109.47334 * 240.00223 * 2 1 3 5 5 O 1.42897 * 109.47567 * 119.99834 * 2 1 3 6 6 C 1.42903 * 113.99791 * 60.00308 * 5 2 1 7 7 O 1.42901 * 109.47479 * 74.99806 * 6 5 2 8 8 C 1.35671 * 116.99781 * 75.00012 * 7 6 5 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.47175 * 299.99404 * 1 2 3 23 23 H 1.08999 * 109.47638 * 60.00160 * 1 2 3 24 24 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47021 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46705 * 299.99850 * 3 2 1 27 27 H 1.09000 * 109.46648 * 60.00272 * 3 2 1 28 28 H 1.08994 * 109.46805 * 300.00022 * 4 2 1 29 29 H 1.09005 * 109.46995 * 59.99740 * 4 2 1 30 30 H 1.08997 * 109.47254 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47034 * 315.00096 * 6 5 2 32 32 H 1.08996 * 109.47178 * 195.00333 * 6 5 2 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2644 7 8 2.3337 -2.8332 0.3452 8 6 3.6189 -3.1131 0.6778 9 6 4.1459 -2.6302 1.8736 10 6 5.4390 -2.9028 2.2129 11 6 6.2380 -3.6840 1.3558 12 6 7.5754 -3.9761 1.7024 13 1 7.8793 -3.9658 2.7387 14 6 8.5067 -4.2789 0.7033 15 7 8.2585 -3.9593 -0.5413 16 14 10.1046 -5.1394 1.1458 17 1 10.1435 -5.3893 2.6091 18 1 10.1882 -6.4321 0.4200 19 1 11.2527 -4.2800 0.7602 20 6 5.6959 -4.1725 0.1513 21 6 4.4026 -3.8864 -0.1757 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7488 -1.2493 29 1 1.6766 -0.2073 -2.1393 30 1 3.1299 -0.7208 -1.2495 31 1 0.5236 -2.1054 1.0253 32 1 1.7530 -2.3960 2.2792 33 1 3.5303 -2.0355 2.5321 34 1 5.8473 -2.5244 3.1384 35 1 8.9044 -4.1689 -1.2340 36 1 6.3019 -4.7726 -0.5113 37 1 3.9852 -4.2606 -1.0989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309188255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = -77.176013 kcal Electronic energy + Delta-G solvation = -18550.337503 eV Core-core repulsion = 15678.562229 eV Total energy + Delta-G solvation = -2871.775274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54938 -37.79762 -36.01042 -33.31796 -32.92292 -29.69709 -28.98838 -27.60252 -27.06159 -25.71398 -24.41355 -20.95032 -20.75653 -19.68928 -17.34785 -17.08320 -16.12024 -15.97156 -15.10999 -15.06264 -14.19434 -13.90350 -13.58784 -12.97290 -12.77248 -12.56841 -12.22389 -12.14969 -12.07678 -11.90790 -11.75609 -11.62373 -11.33234 -11.14584 -10.92522 -10.83120 -10.60288 -10.21856 -10.01352 -9.80217 -9.63567 -9.21404 -8.98737 -7.55484 -6.96947 -6.67361 -4.20190 2.81592 3.04252 3.11507 3.16836 3.24547 3.91759 3.98947 4.24092 4.68704 4.95478 4.97291 5.18934 5.37618 5.52480 5.58091 5.72818 5.73596 5.79464 5.91969 5.94448 6.10365 6.17957 6.26154 6.30045 6.42444 6.68663 6.77592 7.04791 7.18003 7.24852 7.40038 7.54437 7.63071 7.89777 8.07068 8.27230 8.49689 8.71061 8.95937 9.05255 10.27008 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.041832 B = 0.004929 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.182539 B = 5679.862214 C = 5741.166135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.173 4.173 5 O -0.382 6.382 6 C 0.215 3.785 7 O -0.338 6.338 8 C -0.007 4.007 9 C -0.154 4.154 10 C -0.198 4.198 11 C 0.088 3.912 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.800 5.800 16 Si 0.905 3.095 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.276 1.276 20 C -0.138 4.138 21 C -0.120 4.120 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.278 0.722 36 H 0.124 0.876 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.721 5.011 -0.416 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.069 3.931 3 C -0.195 4.195 4 C -0.230 4.230 5 O -0.303 6.303 6 C 0.101 3.899 7 O -0.255 6.255 8 C -0.049 4.049 9 C -0.173 4.173 10 C -0.218 4.218 11 C 0.086 3.914 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.426 5.426 16 Si 0.730 3.270 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.157 4.157 21 C -0.139 4.139 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.587 5.042 -0.676 11.746 hybrid contribution 0.665 -0.301 0.131 0.742 sum -9.921 4.741 -0.544 11.010 Atomic orbital electron populations 1.22449 0.96393 1.02257 1.02430 1.21457 0.92275 0.93025 0.86315 1.21765 1.02382 0.93605 1.01717 1.22544 1.02908 1.01552 0.95978 1.88120 1.75340 1.24380 1.42447 1.23807 0.93462 0.77939 0.94666 1.86015 1.23737 1.67502 1.48261 1.18506 0.83603 1.06122 0.96706 1.20441 0.96903 1.03483 0.96462 1.20587 0.94443 1.04808 1.01927 1.17594 0.92987 0.89387 0.91432 1.19492 0.93580 1.42019 0.94318 0.90599 1.25863 1.00181 0.93578 0.94501 1.69848 1.35847 1.35391 1.01542 0.86314 0.81050 0.79613 0.80026 1.18499 1.19794 1.20123 1.20935 0.92694 1.02622 0.99479 1.19827 0.94318 1.01556 0.98238 0.92074 0.91609 0.92165 0.91615 0.91553 0.92268 0.90362 0.93105 0.91569 0.89411 0.89274 0.88398 0.88885 0.91085 0.85860 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.31 37.15 0.31 -1.67 16 2 C 0.11 1.53 1.14 -90.62 -0.10 1.43 16 3 C -0.14 -1.74 8.84 37.16 0.33 -1.41 16 4 C -0.17 -2.65 7.72 37.16 0.29 -2.36 16 5 O -0.38 -6.49 9.50 -59.04 -0.56 -7.05 16 6 C 0.21 3.47 5.97 101.05 0.60 4.08 16 7 O -0.34 -6.70 7.42 -42.53 -0.32 -7.01 16 8 C -0.01 -0.16 6.65 -38.78 -0.26 -0.41 16 9 C -0.15 -3.60 8.71 -39.83 -0.35 -3.94 16 10 C -0.20 -5.01 9.74 -39.25 -0.38 -5.39 16 11 C 0.09 2.40 5.57 -106.81 -0.60 1.81 16 12 C -0.46 -12.56 9.04 -37.83 -0.34 -12.90 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 14 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 15 N -0.80 -21.08 10.96 55.55 0.61 -20.47 16 16 Si 0.91 18.98 29.60 -169.99 -5.03 13.95 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 C -0.14 -3.66 8.64 -39.25 -0.34 -4.00 16 21 C -0.12 -2.94 9.92 -39.83 -0.40 -3.34 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.65 6.25 -51.93 -0.32 0.33 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.28 5.88 -51.93 -0.31 0.98 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.15 5.79 -51.93 -0.30 0.85 16 32 H 0.09 1.40 6.67 -51.93 -0.35 1.06 16 33 H 0.10 2.07 5.82 -52.49 -0.31 1.77 16 34 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.12 3.35 6.16 -52.49 -0.32 3.02 16 37 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -28.66 300.08 -7.36 -36.02 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.26 Total: 6.31 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -1.32 Total: -26.27 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.61 Total: -20.47 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.88 Total: -14.06 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.66 -7.36 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309188255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.160 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds