Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 H 1.09006 * 109.46846 * 55.00238 * 3 2 1 5 5 C 1.52999 * 109.47337 * 175.00016 * 3 2 1 6 6 O 1.42894 * 109.47162 * 295.00025 * 3 2 1 7 7 C 1.42897 * 114.00205 * 149.99601 * 6 3 2 8 8 O 1.42905 * 109.46938 * 74.99846 * 7 6 3 9 9 C 1.35681 * 116.99556 * 75.00557 * 8 7 6 10 10 C 1.39310 * 119.81715 * 359.72078 * 9 8 7 11 11 C 1.36435 * 120.18248 * 179.71645 * 10 9 8 12 12 C 1.40837 * 119.81135 * 0.56182 * 11 10 9 13 13 C 1.41217 * 120.17878 * 179.69378 * 12 11 10 14 14 H 1.07996 * 119.99831 * 204.56463 * 13 12 11 15 15 C 1.39886 * 119.99987 * 24.56851 * 13 12 11 16 16 N 1.30878 * 120.00347 * 17.91925 * 15 13 12 17 17 Si 1.86804 * 119.99872 * 197.92492 * 15 13 12 18 18 H 1.48498 * 109.47439 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.46947 * 210.00182 * 17 15 13 20 20 H 1.48504 * 109.46747 * 329.99626 * 17 15 13 21 21 C 1.40831 * 119.63794 * 359.71654 * 12 11 10 22 22 C 1.36435 * 119.81815 * 0.02562 * 21 12 11 23 23 H 1.08998 * 109.47208 * 299.99692 * 1 2 3 24 24 H 1.08993 * 109.47183 * 59.99843 * 1 2 3 25 25 H 1.09003 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47307 * 239.99782 * 2 1 3 27 27 H 1.09001 * 109.47191 * 120.00514 * 2 1 3 28 28 H 1.08996 * 109.47196 * 180.02562 * 5 3 2 29 29 H 1.09008 * 109.46922 * 300.00195 * 5 3 2 30 30 H 1.09000 * 109.46977 * 59.99581 * 5 3 2 31 31 H 1.09006 * 109.47190 * 315.00431 * 7 6 3 32 32 H 1.09001 * 109.47756 * 195.00059 * 7 6 3 33 33 H 1.07999 * 119.90863 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.09662 * 180.27778 * 11 10 9 35 35 H 0.96997 * 120.00116 * 179.97438 * 16 15 13 36 36 H 1.08009 * 120.08921 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.91356 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 8 1.6621 2.0813 -1.2210 7 6 1.4560 3.4902 -1.1003 8 8 2.7199 4.1496 -1.0004 9 6 3.4473 4.2628 -2.1401 10 6 2.9516 3.7408 -3.3329 11 6 3.6742 3.8555 -4.4845 12 6 4.9297 4.4933 -4.4627 13 6 5.6870 4.6106 -5.6488 14 1 6.7602 4.7195 -5.5957 15 6 5.0472 4.5859 -6.8925 16 7 3.7595 4.8066 -6.9705 17 14 6.0307 4.2377 -8.4421 18 1 6.0472 2.7754 -8.6998 19 1 5.4044 4.9363 -9.5932 20 1 7.4223 4.7249 -8.2650 21 6 5.4259 5.0130 -3.2515 22 6 4.6884 4.8947 -2.1098 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9282 2.4719 0.1262 29 1 3.8532 0.9569 1.0572 30 1 3.9995 0.9052 -0.7161 31 1 0.8672 3.6960 -0.2063 32 1 0.9236 3.8562 -1.9782 33 1 1.9909 3.2477 -3.3468 34 1 3.2866 3.4543 -5.4093 35 1 3.3159 4.7898 -7.8330 36 1 6.3881 5.5032 -3.2264 37 1 5.0677 5.2923 -1.1800 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309201947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = -85.520086 kcal Electronic energy + Delta-G solvation = -18323.645855 eV Core-core repulsion = 15451.508755 eV Total energy + Delta-G solvation = -2872.137100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.27688 -37.61517 -36.01351 -33.53791 -33.10445 -29.77935 -29.49698 -29.11714 -25.90000 -24.47349 -23.47539 -21.23432 -20.83182 -20.36437 -17.43001 -17.24327 -16.44819 -15.76706 -15.10687 -14.89575 -14.02867 -13.94337 -13.86734 -13.26865 -12.95337 -12.71058 -12.38385 -12.32490 -11.99286 -11.78904 -11.66767 -11.36310 -11.15012 -11.05927 -11.04188 -10.69586 -10.64629 -10.36511 -9.99260 -9.77993 -9.71262 -9.22904 -8.98766 -7.56458 -6.98239 -6.68422 -4.21042 2.81470 3.04317 3.11020 3.14365 3.25288 3.92774 3.98538 4.23896 4.67993 4.88350 5.08318 5.19369 5.38764 5.42154 5.59256 5.65828 5.73249 5.76963 5.90963 5.92131 6.10286 6.19737 6.25461 6.33244 6.34579 6.60449 6.72993 6.96367 7.12169 7.32052 7.37599 7.49431 7.62653 7.99980 8.06098 8.20758 8.47580 8.70399 8.95225 9.04816 10.26266 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.005076 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.250960 B = 5514.570473 C = 5843.511550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.174 4.174 6 O -0.384 6.384 7 C 0.220 3.780 8 O -0.342 6.342 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.135 4.135 12 C 0.089 3.911 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.800 5.800 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.263 1.263 21 C -0.201 4.201 22 C -0.114 4.114 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.279 0.721 36 H 0.098 0.902 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 -5.951 9.439 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.232 4.232 6 O -0.305 6.305 7 C 0.107 3.893 8 O -0.260 6.260 9 C -0.050 4.050 10 C -0.178 4.178 11 C -0.155 4.155 12 C 0.087 3.913 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.141 4.141 16 N -0.427 5.427 17 Si 0.731 3.269 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.220 4.220 22 C -0.133 4.133 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.295 -5.947 9.269 12.219 hybrid contribution 0.235 -0.057 -0.740 0.778 sum -5.059 -6.004 8.529 11.593 Atomic orbital electron populations 1.21733 0.95697 1.01299 1.02025 1.21660 0.96269 0.95538 1.02522 1.22086 0.94813 0.93190 0.86577 0.92747 1.22341 0.95788 1.03794 1.01241 1.88077 1.87931 1.21233 1.33248 1.23855 0.85428 0.78459 1.01602 1.85957 1.32036 1.74162 1.33813 1.18468 0.93962 1.08156 0.84398 1.20634 1.00100 1.04008 0.93103 1.20949 0.96561 1.01423 0.96539 1.17599 0.92219 0.89373 0.92156 1.19476 0.95073 1.44851 0.90051 0.90566 1.25859 0.94949 0.92337 1.00958 1.69841 1.10410 1.35253 1.27159 0.86346 0.80773 0.79412 0.80350 1.19377 1.20430 1.18697 1.20557 1.00784 1.07481 0.93216 1.19603 0.93092 1.02882 0.97688 0.93241 0.91941 0.93001 0.91067 0.91113 0.90859 0.92790 0.92041 0.89779 0.89079 0.88316 0.86234 0.91047 0.88425 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 37.16 0.36 -1.20 16 2 C -0.12 -1.42 5.64 -26.73 -0.15 -1.57 16 3 C 0.09 1.26 2.70 -26.73 -0.07 1.19 16 4 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 5 C -0.17 -2.58 9.37 37.16 0.35 -2.23 16 6 O -0.38 -6.42 8.99 -59.04 -0.53 -6.95 16 7 C 0.22 3.60 6.35 101.05 0.64 4.24 16 8 O -0.34 -6.85 8.74 -42.56 -0.37 -7.22 16 9 C -0.01 -0.17 6.65 -38.78 -0.26 -0.43 16 10 C -0.16 -3.85 8.70 -39.83 -0.35 -4.20 16 11 C -0.14 -3.60 8.64 -39.25 -0.34 -3.94 16 12 C 0.09 2.41 5.57 -106.80 -0.60 1.82 16 13 C -0.46 -12.55 9.04 -37.83 -0.34 -12.89 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 16 N -0.80 -21.07 10.96 55.54 0.61 -20.46 16 17 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 C -0.20 -5.03 9.74 -39.25 -0.38 -5.42 16 22 C -0.11 -2.68 9.92 -39.83 -0.40 -3.07 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.25 6.73 -51.93 -0.35 0.90 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.09 7.70 -51.93 -0.40 0.69 16 32 H 0.09 1.49 6.69 -51.93 -0.35 1.14 16 33 H 0.10 2.21 5.82 -52.49 -0.31 1.90 16 34 H 0.12 3.28 6.16 -52.48 -0.32 2.96 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -28.50 306.54 -7.78 -36.28 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.46 Total: 5.61 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -1.62 Total: -25.86 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.61 Total: -20.46 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.90 Total: -14.18 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.50 -7.78 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.244 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds