Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 H 1.09006 * 109.46846 * 55.00238 * 3 2 1 5 5 C 1.52999 * 109.47337 * 175.00016 * 3 2 1 6 6 O 1.42894 * 109.47162 * 295.00025 * 3 2 1 7 7 C 1.42897 * 114.00205 * 149.99601 * 6 3 2 8 8 O 1.42905 * 109.46938 * 74.99846 * 7 6 3 9 9 C 1.35681 * 116.99556 * 75.00557 * 8 7 6 10 10 C 1.39310 * 119.81715 * 359.72078 * 9 8 7 11 11 C 1.36435 * 120.18248 * 179.71645 * 10 9 8 12 12 C 1.40837 * 119.81135 * 0.56182 * 11 10 9 13 13 C 1.41217 * 120.17878 * 179.69378 * 12 11 10 14 14 H 1.07996 * 119.99831 * 204.56463 * 13 12 11 15 15 C 1.39886 * 119.99987 * 24.56851 * 13 12 11 16 16 N 1.30878 * 120.00347 * 17.91925 * 15 13 12 17 17 Si 1.86804 * 119.99872 * 197.92492 * 15 13 12 18 18 H 1.48498 * 109.47439 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.46947 * 210.00182 * 17 15 13 20 20 H 1.48504 * 109.46747 * 329.99626 * 17 15 13 21 21 C 1.40831 * 119.63794 * 359.71654 * 12 11 10 22 22 C 1.36435 * 119.81815 * 0.02562 * 21 12 11 23 23 H 1.08998 * 109.47208 * 299.99692 * 1 2 3 24 24 H 1.08993 * 109.47183 * 59.99843 * 1 2 3 25 25 H 1.09003 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47307 * 239.99782 * 2 1 3 27 27 H 1.09001 * 109.47191 * 120.00514 * 2 1 3 28 28 H 1.08996 * 109.47196 * 180.02562 * 5 3 2 29 29 H 1.09008 * 109.46922 * 300.00195 * 5 3 2 30 30 H 1.09000 * 109.46977 * 59.99581 * 5 3 2 31 31 H 1.09006 * 109.47190 * 315.00431 * 7 6 3 32 32 H 1.09001 * 109.47756 * 195.00059 * 7 6 3 33 33 H 1.07999 * 119.90863 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.09662 * 180.27778 * 11 10 9 35 35 H 0.96997 * 120.00116 * 179.97438 * 16 15 13 36 36 H 1.08009 * 120.08921 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.91356 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 8 1.6621 2.0813 -1.2210 7 6 1.4560 3.4902 -1.1003 8 8 2.7199 4.1496 -1.0004 9 6 3.4473 4.2628 -2.1401 10 6 2.9516 3.7408 -3.3329 11 6 3.6742 3.8555 -4.4845 12 6 4.9297 4.4933 -4.4627 13 6 5.6870 4.6106 -5.6488 14 1 6.7602 4.7195 -5.5957 15 6 5.0472 4.5859 -6.8925 16 7 3.7595 4.8066 -6.9705 17 14 6.0307 4.2377 -8.4421 18 1 6.0472 2.7754 -8.6998 19 1 5.4044 4.9363 -9.5932 20 1 7.4223 4.7249 -8.2650 21 6 5.4259 5.0130 -3.2515 22 6 4.6884 4.8947 -2.1098 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9282 2.4719 0.1262 29 1 3.8532 0.9569 1.0572 30 1 3.9995 0.9052 -0.7161 31 1 0.8672 3.6960 -0.2063 32 1 0.9236 3.8562 -1.9782 33 1 1.9909 3.2477 -3.3468 34 1 3.2866 3.4543 -5.4093 35 1 3.3159 4.7898 -7.8330 36 1 6.3881 5.5032 -3.2264 37 1 5.0677 5.2923 -1.1800 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309201947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = -100.106240 kcal Electronic energy + Delta-G solvation = -18324.278358 eV Core-core repulsion = 15451.508755 eV Total energy + Delta-G solvation = -2872.769604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82128 -39.15560 -37.65021 -35.22706 -34.41842 -31.50461 -31.06374 -30.71348 -27.48918 -26.18334 -24.50146 -23.04861 -22.34165 -21.84957 -19.25715 -18.90974 -17.85219 -17.36474 -16.64390 -16.34022 -15.75990 -15.26702 -15.08690 -14.70956 -14.43858 -14.19076 -14.10329 -13.82640 -13.58244 -13.39037 -13.01833 -12.78353 -12.74778 -12.43295 -12.39012 -12.10871 -11.99046 -11.72238 -11.62186 -11.38098 -11.23860 -10.92171 -10.79196 -9.52003 -8.91366 -8.58931 -6.21874 0.96685 1.07978 1.39041 1.52188 1.53103 2.23001 2.64694 2.72494 2.86249 3.73836 3.88174 4.11143 4.16327 4.23347 4.27341 4.44259 4.44838 4.47837 4.68851 4.77349 4.81562 4.88977 5.03952 5.09490 5.12184 5.17014 5.23361 5.37451 5.39901 5.45489 5.52176 5.68947 6.01566 6.08345 6.17965 6.27553 6.57475 6.80927 6.96678 7.11671 8.37893 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.005076 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.250960 B = 5514.570473 C = 5843.511550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.084 3.916 4 H 0.076 0.924 5 C -0.172 4.172 6 O -0.403 6.403 7 C 0.212 3.788 8 O -0.342 6.342 9 C 0.009 3.991 10 C -0.163 4.163 11 C -0.158 4.158 12 C 0.056 3.944 13 C -0.502 4.502 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.832 5.832 17 Si 0.981 3.019 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.258 1.258 21 C -0.209 4.209 22 C -0.122 4.122 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.286 0.714 36 H 0.108 0.892 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -6.522 10.689 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.027 3.973 4 H 0.094 0.906 5 C -0.229 4.229 6 O -0.324 6.324 7 C 0.099 3.901 8 O -0.260 6.260 9 C -0.035 4.035 10 C -0.181 4.181 11 C -0.177 4.177 12 C 0.054 3.946 13 C -0.532 4.532 14 H 0.093 0.907 15 C -0.179 4.179 16 N -0.460 5.460 17 Si 0.802 3.198 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.182 1.182 21 C -0.228 4.228 22 C -0.140 4.140 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.812 -6.522 10.544 13.692 hybrid contribution 0.295 0.090 -0.936 0.986 sum -5.516 -6.433 9.608 12.811 Atomic orbital electron populations 1.21709 0.94647 1.02199 1.01908 1.21668 0.97161 0.93978 1.02873 1.22359 0.94188 0.94591 0.86196 0.90589 1.22320 0.96613 1.02130 1.01848 1.88068 1.87877 1.21219 1.35211 1.24262 0.83905 0.78292 1.03657 1.85977 1.33376 1.74562 1.32089 1.18534 0.93911 1.06111 0.84934 1.20762 1.00465 1.04019 0.92890 1.20897 0.97278 1.02768 0.96805 1.17940 0.92941 0.90482 0.93282 1.19725 0.95193 1.47031 0.91221 0.90684 1.26714 0.95965 0.91369 1.03891 1.69896 1.11949 1.35684 1.28422 0.85220 0.79204 0.79294 0.76069 1.18893 1.19274 1.18152 1.20771 1.01462 1.07357 0.93238 1.19897 0.93219 1.02688 0.98210 0.91781 0.93581 0.91680 0.92735 0.88751 0.93282 0.89892 0.94254 0.85544 0.89380 0.86956 0.87981 0.90322 0.87408 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.81 71.98 0.71 -1.97 16 2 C -0.12 -2.49 5.64 30.59 0.17 -2.32 16 3 C 0.08 2.12 2.70 30.59 0.08 2.21 16 4 H 0.08 1.62 7.55 -2.38 -0.02 1.60 16 5 C -0.17 -4.83 9.37 71.98 0.67 -4.15 16 6 O -0.40 -12.88 8.99 -126.21 -1.13 -14.01 16 7 C 0.21 6.47 6.35 113.37 0.72 7.19 16 8 O -0.34 -13.13 8.74 -67.22 -0.59 -13.72 16 9 C 0.01 0.39 6.65 22.79 0.15 0.54 16 10 C -0.16 -7.93 8.70 22.11 0.19 -7.74 16 11 C -0.16 -8.68 8.64 22.48 0.19 -8.49 16 12 C 0.06 3.12 5.57 -21.28 -0.12 3.00 16 13 C -0.50 -27.94 9.04 23.40 0.21 -27.73 16 14 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 15 C 0.03 1.78 5.13 85.23 0.44 2.22 16 16 N -0.83 -44.92 10.96 21.82 0.24 -44.68 16 17 Si 0.98 39.36 29.60 68.60 2.03 41.39 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 21 C -0.21 -10.61 9.74 22.48 0.22 -10.39 16 22 C -0.12 -5.66 9.92 22.11 0.22 -5.44 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.04 0.98 7.82 -2.39 -0.02 0.97 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.61 6.73 -2.39 -0.02 1.59 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.13 2.80 7.70 -2.38 -0.02 2.79 16 32 H 0.09 2.74 6.69 -2.39 -0.02 2.73 16 33 H 0.11 5.05 5.82 -2.91 -0.02 5.03 16 34 H 0.10 5.88 6.16 -2.91 -0.02 5.86 16 35 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 36 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 37 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -62.54 306.54 5.45 -57.08 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 1.04 Total: 27.02 kcal Atomic # 6 Polarization: -56.94 SS G_CDS: 3.86 Total: -53.08 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.24 Total: -44.68 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -1.72 Total: -27.73 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -62.54 5.45 -57.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.021 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds