Wall clock time and date at job start Mon Mar 30 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53011 * 109.47179 * 2 1 4 4 H 1.08994 * 109.47021 * 304.99603 * 3 2 1 5 5 C 1.52998 * 109.47004 * 184.99711 * 3 2 1 6 6 O 1.42901 * 109.46948 * 64.99780 * 3 2 1 7 7 C 1.42894 * 113.99449 * 209.99866 * 6 3 2 8 8 O 1.42905 * 109.47200 * 75.00374 * 7 6 3 9 9 C 1.35683 * 116.99859 * 74.99573 * 8 7 6 10 10 C 1.39311 * 119.81809 * 359.72633 * 9 8 7 11 11 C 1.36440 * 120.18190 * 179.76091 * 10 9 8 12 12 C 1.40832 * 119.81193 * 0.51419 * 11 10 9 13 13 C 1.41216 * 120.18065 * 179.71606 * 12 11 10 14 14 H 1.07991 * 120.00084 * 204.56262 * 13 12 11 15 15 C 1.39891 * 119.99466 * 24.56452 * 13 12 11 16 16 N 1.30876 * 120.00533 * 17.93058 * 15 13 12 17 17 Si 1.86803 * 119.99717 * 197.93099 * 15 13 12 18 18 H 1.48496 * 109.47029 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46829 * 120.00041 * 17 15 13 20 20 H 1.48498 * 109.47306 * 239.99807 * 17 15 13 21 21 C 1.40833 * 119.64078 * 359.74353 * 12 11 10 22 22 C 1.36436 * 119.81165 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.47488 * 300.00389 * 1 2 3 24 24 H 1.09001 * 109.47306 * 60.00068 * 1 2 3 25 25 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47488 * 239.99611 * 2 1 3 27 27 H 1.09005 * 109.47312 * 119.99419 * 2 1 3 28 28 H 1.09002 * 109.47399 * 299.99978 * 5 3 2 29 29 H 1.09006 * 109.47201 * 60.00081 * 5 3 2 30 30 H 1.09005 * 109.47111 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47653 * 315.00013 * 7 6 3 32 32 H 1.09004 * 109.47149 * 194.99899 * 7 6 3 33 33 H 1.08000 * 119.90884 * 0.02562 * 10 9 8 34 34 H 1.07997 * 120.09316 * 180.24948 * 11 10 9 35 35 H 0.96997 * 120.00757 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.09207 * 179.97438 * 21 12 11 37 37 H 1.08001 * 119.90382 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 8 1.6619 2.0815 1.2210 7 6 1.4559 3.4903 1.1002 8 8 0.2118 3.7350 0.4409 9 6 -0.9183 3.5410 1.1662 10 6 -0.8275 3.1161 2.4898 11 6 -1.9590 2.9233 3.2275 12 6 -3.2214 3.1447 2.6440 13 6 -4.3977 2.9418 3.3985 14 1 -5.3285 2.7193 2.8982 15 6 -4.3571 3.0290 4.7941 16 7 -3.3542 3.6286 5.3835 17 14 -5.7347 2.2897 5.8165 18 1 -6.7422 1.6725 4.9171 19 1 -5.1775 1.2519 6.7210 20 1 -6.3788 3.3562 6.6244 21 6 -3.3045 3.5690 1.3036 22 6 -2.1632 3.7626 0.5816 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9994 0.9053 0.7162 29 1 3.8532 0.9570 -1.0571 30 1 3.9281 2.4721 -0.1261 31 1 2.2674 3.9277 0.5187 32 1 1.4360 3.9411 2.0925 33 1 0.1413 2.9428 2.9345 34 1 -1.8868 2.5977 4.2547 35 1 -3.3258 3.6888 6.3512 36 1 -4.2689 3.7405 0.8487 37 1 -2.2251 4.0876 -0.4465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309201949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:45 Heat of formation + Delta-G solvation = -100.616156 kcal Electronic energy + Delta-G solvation = -18482.072983 eV Core-core repulsion = 15609.281268 eV Total energy + Delta-G solvation = -2872.791715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81628 -39.15668 -37.67182 -35.23411 -34.42718 -31.51178 -31.05037 -30.70901 -27.53505 -26.25408 -24.45019 -23.03674 -22.37415 -21.74876 -19.25398 -18.81848 -17.98768 -17.48151 -16.71249 -16.17159 -15.73882 -15.28681 -15.17126 -14.69938 -14.40487 -14.33529 -14.02943 -13.80161 -13.57065 -13.33463 -12.99690 -12.86262 -12.74372 -12.48571 -12.39153 -12.12772 -12.00976 -11.76792 -11.62567 -11.44538 -11.19738 -10.89613 -10.76085 -9.51564 -8.91479 -8.58986 -6.21580 0.96425 1.08181 1.39314 1.51124 1.54726 2.23212 2.65659 2.71224 2.85032 3.74185 3.87620 4.04962 4.20085 4.22505 4.27183 4.43924 4.44851 4.46644 4.70532 4.73920 4.83752 4.90316 5.03293 5.04323 5.11094 5.17242 5.20443 5.30666 5.39820 5.47199 5.52389 5.69095 6.01571 6.08632 6.17401 6.27378 6.57595 6.80797 6.96971 7.11592 8.37995 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.005329 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.255281 B = 5252.662944 C = 5392.007918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.075 3.925 4 H 0.059 0.941 5 C -0.166 4.166 6 O -0.403 6.403 7 C 0.212 3.788 8 O -0.346 6.346 9 C 0.008 3.992 10 C -0.160 4.160 11 C -0.157 4.157 12 C 0.057 3.943 13 C -0.500 4.500 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.833 5.833 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.209 4.209 22 C -0.121 4.121 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.286 0.714 36 H 0.108 0.892 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.270 -4.089 -7.107 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.077 0.923 5 C -0.223 4.223 6 O -0.324 6.324 7 C 0.099 3.901 8 O -0.263 6.263 9 C -0.036 4.036 10 C -0.179 4.179 11 C -0.176 4.176 12 C 0.055 3.945 13 C -0.530 4.530 14 H 0.093 0.907 15 C -0.179 4.179 16 N -0.460 5.460 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.228 4.228 22 C -0.140 4.140 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.357 -4.051 -6.908 13.092 hybrid contribution -0.582 0.029 0.747 0.948 sum 9.774 -4.022 -6.161 12.234 Atomic orbital electron populations 1.21656 0.96704 1.01207 1.00891 1.21629 0.95278 0.94944 1.03231 1.22357 0.95397 0.94061 0.86427 0.92303 1.22247 0.93933 1.02854 1.03257 1.88083 1.88056 1.22247 1.34006 1.24169 0.84124 0.82434 0.99362 1.85964 1.13776 1.84202 1.42393 1.18536 0.85866 1.08382 0.90788 1.20731 0.98280 1.04955 0.93902 1.20879 0.92186 1.04885 0.99667 1.17932 0.93707 0.90578 0.92311 1.19737 0.96035 1.45064 0.92187 0.90703 1.26711 0.99382 0.92533 0.99302 1.69898 1.32090 1.31874 1.12103 0.85191 0.78045 0.78793 0.77855 1.18169 1.19064 1.19051 1.20765 0.96842 1.09169 0.96061 1.19887 0.90045 1.04608 0.99418 0.95248 0.93507 0.91994 0.88358 0.91652 0.91982 0.89708 0.91941 0.85764 0.89337 0.87048 0.87997 0.90328 0.87414 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.81 71.98 0.71 -3.79 16 2 C -0.11 -2.78 5.64 30.59 0.17 -2.61 16 3 C 0.07 1.90 2.60 30.60 0.08 1.98 16 4 H 0.06 1.58 7.62 -2.39 -0.02 1.56 16 5 C -0.17 -3.03 9.50 71.98 0.68 -2.34 16 6 O -0.40 -12.96 8.97 -126.21 -1.13 -14.09 16 7 C 0.21 6.58 6.23 113.37 0.71 7.28 16 8 O -0.35 -13.47 10.06 -67.25 -0.68 -14.15 16 9 C 0.01 0.35 6.65 22.79 0.15 0.50 16 10 C -0.16 -7.78 8.70 22.11 0.19 -7.59 16 11 C -0.16 -8.58 8.64 22.48 0.19 -8.38 16 12 C 0.06 3.17 5.57 -21.28 -0.12 3.05 16 13 C -0.50 -27.77 9.04 23.40 0.21 -27.56 16 14 H 0.07 4.01 7.91 -2.92 -0.02 3.98 16 15 C 0.03 1.78 5.13 85.24 0.44 2.22 16 16 N -0.83 -44.83 10.96 21.82 0.24 -44.59 16 17 Si 0.98 39.26 29.60 68.60 2.03 41.29 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 21 C -0.21 -10.60 9.74 22.48 0.22 -10.38 16 22 C -0.12 -5.64 9.92 22.11 0.22 -5.42 16 23 H 0.03 1.12 7.82 -2.39 -0.02 1.10 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.06 1.04 7.77 -2.38 -0.02 1.03 16 31 H 0.12 2.85 7.64 -2.39 -0.02 2.83 16 32 H 0.09 2.79 6.69 -2.38 -0.02 2.78 16 33 H 0.11 5.02 5.82 -2.91 -0.02 5.00 16 34 H 0.10 5.85 6.16 -2.91 -0.02 5.83 16 35 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 36 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 37 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -62.45 308.80 5.36 -57.09 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 1.04 Total: 27.49 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 3.86 Total: -53.04 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.24 Total: -44.59 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.81 Total: -28.24 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -62.45 5.36 -57.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.524 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds