Wall clock time and date at job start Mon Mar 30 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34516 * 125.78977 * 2 1 4 4 C 1.41382 * 106.83694 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.84277 * 0.22128 * 4 3 2 6 6 C 1.50706 * 125.79119 * 179.77345 * 5 4 3 7 7 C 1.53004 * 110.27393 * 272.10012 * 6 5 4 8 8 C 1.54936 * 110.31270 * 150.00370 * 6 5 4 9 9 C 1.55306 * 100.94574 * 204.64221 * 8 6 5 10 10 C 1.54377 * 102.24868 * 34.13095 * 9 8 6 11 11 C 1.52998 * 109.83085 * 219.12825 * 10 9 8 12 12 C 1.50705 * 109.82979 * 98.25178 * 10 9 8 13 13 H 1.08004 * 119.99919 * 5.25267 * 12 10 9 14 14 C 1.37873 * 120.00007 * 185.25784 * 12 10 9 15 15 N 1.31509 * 120.00350 * 5.14306 * 14 12 10 16 16 Si 1.86803 * 120.00007 * 185.14548 * 14 12 10 17 17 H 1.48497 * 109.47242 * 84.99418 * 16 14 12 18 18 H 1.48502 * 109.47361 * 204.99740 * 16 14 12 19 19 H 1.48497 * 109.46887 * 325.00060 * 16 14 12 20 20 O 1.43235 * 107.59310 * 338.64429 * 10 9 8 21 21 O 1.34299 * 108.42035 * 359.64183 * 5 4 3 22 22 H 1.08999 * 109.47215 * 89.96851 * 1 2 3 23 23 H 1.08996 * 109.47019 * 209.97940 * 1 2 3 24 24 H 1.09007 * 109.46761 * 329.97090 * 1 2 3 25 25 H 1.07996 * 126.58209 * 359.97438 * 3 2 1 26 26 H 1.08001 * 126.57383 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47506 * 59.29737 * 7 6 5 28 28 H 1.08998 * 109.47058 * 179.29722 * 7 6 5 29 29 H 1.08999 * 109.46820 * 299.29504 * 7 6 5 30 30 H 1.09004 * 111.12718 * 322.56175 * 8 6 5 31 31 H 1.09002 * 111.12459 * 86.67690 * 8 6 5 32 32 H 1.08993 * 110.85051 * 152.32557 * 9 8 6 33 33 H 1.09006 * 110.84568 * 275.94456 * 9 8 6 34 34 H 1.09006 * 109.46971 * 54.96106 * 11 10 9 35 35 H 1.09002 * 109.47247 * 174.95882 * 11 10 9 36 36 H 1.08997 * 109.47695 * 294.96026 * 11 10 9 37 37 H 0.97002 * 120.00341 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0059 6 6 4.7705 -1.6380 -0.0133 7 6 5.2168 -1.9163 -1.4501 8 6 4.4241 -2.9643 0.7088 9 6 5.8360 -3.4368 1.1509 10 6 6.5498 -2.1010 1.4497 11 6 7.9999 -2.1680 0.9666 12 6 6.5168 -1.8238 2.9306 13 1 6.1140 -2.5612 3.6092 14 6 7.0008 -0.6288 3.4192 15 7 7.3974 0.3094 2.5874 16 14 7.0932 -0.3424 5.2629 17 1 8.3618 -0.9076 5.7886 18 1 7.0485 1.1158 5.5402 19 1 5.9428 -1.0078 5.9254 20 8 5.8500 -1.0690 0.7446 21 8 2.2924 -1.0894 -0.0006 22 1 -0.3633 0.0006 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 1.9667 2.1204 -0.0004 26 1 4.5212 1.2433 -0.0012 27 1 5.4805 -0.9775 -1.9371 28 1 6.0842 -2.5763 -1.4397 29 1 4.4037 -2.3935 -1.9971 30 1 3.7817 -2.7859 1.5711 31 1 3.9674 -3.6775 0.0226 32 1 5.7755 -4.0534 2.0476 33 1 6.3363 -3.9720 0.3438 34 1 8.0192 -2.4414 -0.0885 35 1 8.4722 -1.1945 1.0983 36 1 8.5417 -2.9159 1.5456 37 1 7.7383 1.1500 2.9312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309432588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:52 Heat of formation + Delta-G solvation = -34.715858 kcal Electronic energy + Delta-G solvation = -19319.550689 eV Core-core repulsion = 16449.616625 eV Total energy + Delta-G solvation = -2869.934064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04654 -38.68084 -33.51404 -32.70048 -31.68953 -31.08799 -30.33690 -27.82234 -26.02567 -25.07560 -23.14725 -21.12585 -20.68077 -19.46919 -19.02232 -16.80428 -16.13130 -15.68497 -14.64769 -14.36430 -14.27857 -13.51852 -13.10613 -12.97679 -12.91075 -12.64170 -12.59323 -12.19929 -11.94519 -11.76639 -11.52504 -11.37283 -11.21990 -10.81657 -10.74504 -10.51570 -10.36719 -10.12895 -9.83285 -9.64066 -9.27966 -9.09356 -8.46276 -7.96324 -7.69807 -5.92238 -4.06173 2.24046 3.22120 3.28723 3.33969 3.39410 3.41905 4.45811 4.88605 5.10576 5.27514 5.40960 5.48807 5.52950 5.55658 5.63653 5.74792 5.82117 5.96691 6.05722 6.10697 6.25087 6.36999 6.46619 6.57312 6.58622 6.65707 6.74414 6.80795 6.87643 6.92260 7.08222 7.15977 7.28048 7.75121 7.80582 8.00074 8.37162 8.59854 9.07158 9.63701 11.11441 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.008369 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.707084 B = 3344.965176 C = 3991.716635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.041 4.041 3 C -0.210 4.210 4 C -0.186 4.186 5 C 0.012 3.988 6 C 0.177 3.823 7 C -0.150 4.150 8 C -0.135 4.135 9 C -0.142 4.142 10 C 0.229 3.771 11 C -0.134 4.134 12 C -0.536 4.536 13 H 0.059 0.941 14 C 0.083 3.917 15 N -0.853 5.853 16 Si 0.884 3.116 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.275 1.275 20 O -0.321 6.321 21 O -0.175 6.175 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.150 0.850 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 -2.238 -6.546 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.230 4.230 4 C -0.205 4.205 5 C -0.038 4.038 6 C 0.136 3.864 7 C -0.207 4.207 8 C -0.173 4.173 9 C -0.180 4.180 10 C 0.192 3.808 11 C -0.192 4.192 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.123 4.123 15 N -0.489 5.489 16 Si 0.711 3.289 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.200 1.200 20 O -0.240 6.240 21 O -0.072 6.072 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.158 0.842 26 H 0.168 0.832 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.502 -2.127 -6.551 10.942 hybrid contribution 0.058 0.357 1.138 1.194 sum -8.444 -1.770 -5.413 10.185 Atomic orbital electron populations 1.20174 0.85780 1.03487 1.02731 1.22240 0.93612 0.84659 1.08531 1.21548 0.93212 0.98837 1.09364 1.21548 0.97587 0.94295 1.07055 1.22354 0.82072 0.94814 1.04541 1.20186 0.84493 0.89029 0.92720 1.22172 1.01126 1.02041 0.95407 1.23111 0.98410 0.95802 0.99945 1.23228 0.94594 0.99964 1.00166 1.19702 0.88142 0.81615 0.91372 1.21944 0.98731 1.02497 0.96018 1.21195 1.42840 1.02767 0.90583 0.92316 1.24975 0.94328 0.95829 0.97148 1.70040 1.40267 1.05043 1.33513 0.86768 0.78457 0.77283 0.86374 1.20531 1.21252 1.20014 1.88878 1.40557 1.32880 1.61693 1.83878 1.16449 1.34845 1.72050 0.90802 0.91015 0.89896 0.84197 0.83230 0.92060 0.91515 0.92782 0.90820 0.91806 0.91129 0.92780 0.96608 0.90555 0.94006 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.42 36.01 0.38 -0.36 16 2 C -0.04 -0.68 7.32 -35.62 -0.26 -0.94 16 3 C -0.21 -3.70 10.81 -39.70 -0.43 -4.13 16 4 C -0.19 -3.87 10.46 -39.70 -0.42 -4.29 16 5 C 0.01 0.26 5.90 -35.62 -0.21 0.04 16 6 C 0.18 3.75 1.13 -90.75 -0.10 3.65 16 7 C -0.15 -2.68 8.83 37.16 0.33 -2.35 16 8 C -0.13 -2.69 5.82 -24.49 -0.14 -2.83 16 9 C -0.14 -2.94 5.70 -24.79 -0.14 -3.08 16 10 C 0.23 5.66 0.82 -91.05 -0.07 5.59 16 11 C -0.13 -3.17 8.54 37.16 0.32 -2.85 16 12 C -0.54 -14.76 8.21 -34.44 -0.28 -15.05 16 13 H 0.06 1.60 7.46 -52.48 -0.39 1.21 16 14 C 0.08 2.32 5.24 -17.82 -0.09 2.23 16 15 N -0.85 -24.57 11.24 55.43 0.62 -23.95 16 16 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 O -0.32 -8.17 8.83 -35.23 -0.31 -8.48 16 21 O -0.17 -3.39 10.36 5.73 0.06 -3.33 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 26 H 0.15 3.26 8.06 -52.49 -0.42 2.84 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.15 7.36 -51.93 -0.38 0.77 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.57 8.05 -51.93 -0.42 1.15 16 31 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 32 H 0.07 1.44 7.59 -51.93 -0.39 1.05 16 33 H 0.05 1.00 7.46 -51.93 -0.39 0.61 16 34 H 0.01 0.32 7.94 -51.93 -0.41 -0.09 16 35 H 0.08 2.00 6.77 -51.93 -0.35 1.65 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -30.49 304.43 -6.87 -37.36 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.67 Total: 1.76 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -1.13 Total: -24.38 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.62 Total: -23.95 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.25 Total: -11.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.49 -6.87 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.643 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds