Wall clock time and date at job start Mon Mar 30 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34516 * 125.78977 * 2 1 4 4 C 1.41382 * 106.83694 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.84277 * 0.22128 * 4 3 2 6 6 C 1.50706 * 125.79119 * 179.77345 * 5 4 3 7 7 C 1.53004 * 110.27393 * 272.10012 * 6 5 4 8 8 C 1.54936 * 110.31270 * 150.00370 * 6 5 4 9 9 C 1.55306 * 100.94574 * 204.64221 * 8 6 5 10 10 C 1.54377 * 102.24868 * 34.13095 * 9 8 6 11 11 C 1.52998 * 109.83085 * 219.12825 * 10 9 8 12 12 C 1.50705 * 109.82979 * 98.25178 * 10 9 8 13 13 H 1.08004 * 119.99919 * 5.25267 * 12 10 9 14 14 C 1.37873 * 120.00007 * 185.25784 * 12 10 9 15 15 N 1.31509 * 120.00350 * 5.14306 * 14 12 10 16 16 Si 1.86803 * 120.00007 * 185.14548 * 14 12 10 17 17 H 1.48497 * 109.47242 * 84.99418 * 16 14 12 18 18 H 1.48502 * 109.47361 * 204.99740 * 16 14 12 19 19 H 1.48497 * 109.46887 * 325.00060 * 16 14 12 20 20 O 1.43235 * 107.59310 * 338.64429 * 10 9 8 21 21 O 1.34299 * 108.42035 * 359.64183 * 5 4 3 22 22 H 1.08999 * 109.47215 * 89.96851 * 1 2 3 23 23 H 1.08996 * 109.47019 * 209.97940 * 1 2 3 24 24 H 1.09007 * 109.46761 * 329.97090 * 1 2 3 25 25 H 1.07996 * 126.58209 * 359.97438 * 3 2 1 26 26 H 1.08001 * 126.57383 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47506 * 59.29737 * 7 6 5 28 28 H 1.08998 * 109.47058 * 179.29722 * 7 6 5 29 29 H 1.08999 * 109.46820 * 299.29504 * 7 6 5 30 30 H 1.09004 * 111.12718 * 322.56175 * 8 6 5 31 31 H 1.09002 * 111.12459 * 86.67690 * 8 6 5 32 32 H 1.08993 * 110.85051 * 152.32557 * 9 8 6 33 33 H 1.09006 * 110.84568 * 275.94456 * 9 8 6 34 34 H 1.09006 * 109.46971 * 54.96106 * 11 10 9 35 35 H 1.09002 * 109.47247 * 174.95882 * 11 10 9 36 36 H 1.08997 * 109.47695 * 294.96026 * 11 10 9 37 37 H 0.97002 * 120.00341 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0059 6 6 4.7705 -1.6380 -0.0133 7 6 5.2168 -1.9163 -1.4501 8 6 4.4241 -2.9643 0.7088 9 6 5.8360 -3.4368 1.1509 10 6 6.5498 -2.1010 1.4497 11 6 7.9999 -2.1680 0.9666 12 6 6.5168 -1.8238 2.9306 13 1 6.1140 -2.5612 3.6092 14 6 7.0008 -0.6288 3.4192 15 7 7.3974 0.3094 2.5874 16 14 7.0932 -0.3424 5.2629 17 1 8.3618 -0.9076 5.7886 18 1 7.0485 1.1158 5.5402 19 1 5.9428 -1.0078 5.9254 20 8 5.8500 -1.0690 0.7446 21 8 2.2924 -1.0894 -0.0006 22 1 -0.3633 0.0006 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 1.9667 2.1204 -0.0004 26 1 4.5212 1.2433 -0.0012 27 1 5.4805 -0.9775 -1.9371 28 1 6.0842 -2.5763 -1.4397 29 1 4.4037 -2.3935 -1.9971 30 1 3.7817 -2.7859 1.5711 31 1 3.9674 -3.6775 0.0226 32 1 5.7755 -4.0534 2.0476 33 1 6.3363 -3.9720 0.3438 34 1 8.0192 -2.4414 -0.0885 35 1 8.4722 -1.1945 1.0983 36 1 8.5417 -2.9159 1.5456 37 1 7.7383 1.1500 2.9312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309432588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:52 Heat of formation + Delta-G solvation = -52.034781 kcal Electronic energy + Delta-G solvation = -19320.301694 eV Core-core repulsion = 16449.616625 eV Total energy + Delta-G solvation = -2870.685069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49739 -40.39915 -35.36663 -34.09227 -33.40781 -32.79910 -31.81795 -29.46141 -27.37931 -27.08620 -24.75072 -22.64301 -22.19043 -21.22588 -20.60162 -18.69759 -17.73384 -17.14580 -16.54300 -16.07674 -15.80034 -15.21504 -14.76654 -14.44318 -14.29336 -13.94141 -13.76123 -13.70513 -13.49816 -13.34873 -13.20765 -12.93209 -12.73643 -12.70022 -12.57599 -12.26322 -12.14228 -12.01013 -11.48227 -11.38716 -10.91261 -10.76008 -10.56910 -9.83757 -9.13355 -8.01804 -6.21768 0.82155 1.38318 1.39505 1.47657 1.73156 1.88672 2.43004 3.14891 3.51520 3.68274 3.92367 4.06825 4.09353 4.21679 4.41818 4.47423 4.60270 4.63492 4.75582 4.76944 4.84229 4.87744 4.91895 5.01391 5.06825 5.07979 5.08990 5.21298 5.30256 5.36912 5.40271 5.43660 5.68972 5.71676 6.03641 6.27356 6.35745 6.65198 7.14773 7.52414 9.00270 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.008369 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.707084 B = 3344.965176 C = 3991.716635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.029 4.029 3 C -0.227 4.227 4 C -0.210 4.210 5 C -0.012 4.012 6 C 0.165 3.835 7 C -0.142 4.142 8 C -0.126 4.126 9 C -0.135 4.135 10 C 0.214 3.786 11 C -0.126 4.126 12 C -0.554 4.554 13 H 0.052 0.948 14 C 0.036 3.964 15 N -0.881 5.881 16 Si 0.940 3.060 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.274 1.274 20 O -0.354 6.354 21 O -0.181 6.181 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.166 0.834 26 H 0.125 0.875 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -3.291 -7.086 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.246 4.246 4 C -0.229 4.229 5 C -0.062 4.062 6 C 0.124 3.876 7 C -0.199 4.199 8 C -0.164 4.164 9 C -0.172 4.172 10 C 0.176 3.824 11 C -0.184 4.184 12 C -0.591 4.591 13 H 0.070 0.930 14 C -0.167 4.167 15 N -0.518 5.518 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.214 1.214 19 H -0.199 1.199 20 O -0.274 6.274 21 O -0.079 6.079 22 H 0.118 0.882 23 H 0.100 0.900 24 H 0.124 0.876 25 H 0.184 0.816 26 H 0.143 0.857 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.365 -3.192 -7.091 12.958 hybrid contribution 0.552 0.711 1.279 1.564 sum -9.813 -2.481 -5.812 11.671 Atomic orbital electron populations 1.20465 0.81516 1.05146 1.04893 1.23306 0.95753 0.83515 1.05283 1.21828 0.91762 1.00685 1.10289 1.21603 0.98497 0.94673 1.08172 1.22366 0.82912 0.94865 1.06069 1.20504 0.83732 0.89340 0.94003 1.22100 1.02279 1.02067 0.93449 1.23058 0.97691 0.95935 0.99704 1.23148 0.94818 0.98094 1.01151 1.19802 0.89033 0.83482 0.90046 1.21826 0.98156 1.00786 0.97637 1.21601 1.42329 1.02581 0.92627 0.92960 1.25665 0.94350 0.95831 1.00902 1.70182 1.41369 1.05242 1.34991 0.85879 0.78714 0.76901 0.81924 1.19415 1.21408 1.19877 1.88803 1.42033 1.34100 1.62506 1.83878 1.15898 1.35921 1.72202 0.88219 0.89954 0.87610 0.81598 0.85655 0.92837 0.90798 0.90139 0.93031 0.88322 0.91207 0.90035 0.94228 0.93896 0.93364 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.20 10.42 71.24 0.74 -0.45 16 2 C -0.03 -0.91 7.32 24.83 0.18 -0.72 16 3 C -0.23 -7.79 10.81 22.19 0.24 -7.55 16 4 C -0.21 -8.98 10.46 22.19 0.23 -8.75 16 5 C -0.01 -0.52 5.90 24.83 0.15 -0.37 16 6 C 0.16 6.92 1.13 -10.88 -0.01 6.91 16 7 C -0.14 -4.86 8.83 71.98 0.64 -4.22 16 8 C -0.13 -4.85 5.82 32.05 0.19 -4.66 16 9 C -0.13 -5.39 5.70 31.85 0.18 -5.21 16 10 C 0.21 10.62 0.82 -11.07 -0.01 10.61 16 11 C -0.13 -5.98 8.54 71.98 0.61 -5.36 16 12 C -0.55 -30.95 8.21 25.60 0.21 -30.74 16 13 H 0.05 2.89 7.46 -2.91 -0.02 2.87 16 14 C 0.04 2.02 5.24 84.65 0.44 2.46 16 15 N -0.88 -52.41 11.24 21.45 0.24 -52.17 16 16 Si 0.94 44.79 29.54 68.60 2.03 46.82 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 20 O -0.35 -18.42 8.83 -148.98 -1.32 -19.74 16 21 O -0.18 -6.81 10.36 -2.41 -0.02 -6.83 16 22 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.17 4.61 8.06 -2.91 -0.02 4.58 16 26 H 0.13 5.84 8.06 -2.91 -0.02 5.82 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 2.39 7.36 -2.39 -0.02 2.37 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.17 8.05 -2.39 -0.02 2.15 16 31 H 0.10 3.05 8.03 -2.39 -0.02 3.03 16 32 H 0.07 2.77 7.59 -2.39 -0.02 2.75 16 33 H 0.08 2.79 7.46 -2.38 -0.02 2.77 16 34 H 0.04 1.62 7.94 -2.38 -0.02 1.60 16 35 H 0.04 2.29 6.77 -2.39 -0.02 2.28 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -67.78 304.43 5.76 -62.03 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.04 Total: 17.97 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 3.79 Total: -48.07 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.24 Total: -52.17 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.34 Total: -26.57 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.78 5.76 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.991 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds