Wall clock time and date at job start Mon Mar 30 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.34515 * 125.79060 * 90.00255 * 3 2 1 5 5 C 1.41380 * 106.83832 * 179.97438 * 4 3 2 6 6 C 1.34506 * 106.84493 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.79301 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47866 * 25.02745 * 7 6 5 9 9 C 1.53086 * 109.48545 * 265.00412 * 7 6 5 10 10 C 1.53179 * 109.16712 * 182.40783 * 9 7 6 11 11 C 1.53176 * 109.03595 * 56.97829 * 10 9 7 12 12 C 1.53090 * 109.16145 * 303.02135 * 11 10 9 13 13 H 1.09003 * 109.48514 * 297.62375 * 12 11 10 14 14 C 1.50702 * 109.47843 * 177.59237 * 12 11 10 15 15 H 1.07998 * 120.00220 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99864 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00398 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99885 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47583 * 60.00094 * 18 16 14 20 20 H 1.48502 * 109.47304 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47104 * 299.99486 * 18 16 14 22 22 O 1.42900 * 109.41935 * 57.61028 * 12 11 10 23 23 O 1.34306 * 125.78568 * 269.69593 * 3 2 1 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.07995 * 126.57966 * 359.96450 * 4 3 2 30 30 H 1.08004 * 126.57406 * 180.02562 * 5 4 3 31 31 H 1.09009 * 109.51983 * 302.31321 * 9 7 6 32 32 H 1.08998 * 109.52564 * 62.43623 * 9 7 6 33 33 H 1.08996 * 109.54401 * 176.84639 * 10 9 7 34 34 H 1.09000 * 109.54134 * 297.11204 * 10 9 7 35 35 H 1.08995 * 109.52290 * 62.92612 * 11 10 9 36 36 H 1.09002 * 109.52357 * 183.05383 * 11 10 9 37 37 H 0.96995 * 120.00269 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7408 3.4230 0.6320 6 6 2.7251 3.3761 -0.7122 7 6 3.1217 4.4972 -1.6379 8 1 3.8174 5.1622 -1.1262 9 6 1.8748 5.2831 -2.0517 10 6 2.2780 6.3825 -3.0391 11 6 2.9861 5.7428 -4.2373 12 6 4.1901 4.9392 -3.7391 13 1 4.8999 5.6101 -3.2550 14 6 4.8576 4.2583 -4.9062 15 1 4.4633 4.3860 -5.9035 16 6 5.9723 3.4733 -4.7008 17 7 6.4534 3.3189 -3.4866 18 14 6.8000 2.6299 -6.1476 19 1 7.2565 3.6531 -7.1221 20 1 7.9678 1.8503 -5.6641 21 1 5.8334 1.7151 -6.8065 22 8 3.7493 3.9549 -2.8016 23 8 2.2995 2.1594 -1.0895 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.1851 1.8543 2.1204 30 1 3.0381 4.2623 1.2433 31 1 1.1613 4.6101 -2.5273 32 1 1.4188 5.7334 -1.1700 33 1 1.3876 6.9101 -3.3809 34 1 2.9531 7.0837 -2.5484 35 1 2.2951 5.0792 -4.7570 36 1 3.3246 6.5228 -4.9194 37 1 7.2373 2.7664 -3.3421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309464507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:28 Heat of formation + Delta-G solvation = -52.077942 kcal Electronic energy + Delta-G solvation = -18695.951189 eV Core-core repulsion = 15825.264249 eV Total energy + Delta-G solvation = -2870.686940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.08831 -38.11429 -34.04122 -33.08419 -32.48429 -32.30645 -30.61351 -27.84766 -25.60598 -24.07240 -22.45651 -21.83906 -21.05394 -19.65656 -19.22858 -16.78679 -16.25825 -15.48694 -14.95162 -14.73308 -14.38390 -14.29890 -13.93348 -13.67215 -12.89367 -12.84540 -12.65140 -12.29466 -12.24306 -12.03901 -11.57950 -11.47477 -10.95711 -10.93518 -10.90588 -10.71172 -10.39775 -10.32078 -9.89759 -9.83203 -9.40107 -8.91109 -8.52600 -8.05760 -7.70276 -6.00855 -4.13496 2.21075 3.03060 3.33436 3.38007 3.40371 3.41530 4.42415 4.75271 4.95413 5.12922 5.28856 5.34009 5.42860 5.50030 5.52558 5.59502 5.66027 5.80684 5.87613 5.92241 6.00379 6.05018 6.16001 6.23653 6.27710 6.34323 6.52652 6.58901 6.63893 6.81769 6.82945 6.86475 6.97184 7.48159 7.75124 7.89785 8.25904 8.74769 9.08050 9.56871 11.06784 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.007066 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.115198 B = 3961.539775 C = 4788.035447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.027 4.027 4 C -0.211 4.211 5 C -0.226 4.226 6 C 0.035 3.965 7 C 0.159 3.841 8 H 0.071 0.929 9 C -0.141 4.141 10 C -0.119 4.119 11 C -0.145 4.145 12 C 0.218 3.782 13 H 0.016 0.984 14 C -0.527 4.527 15 H 0.065 0.935 16 C 0.078 3.922 17 N -0.859 5.859 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 O -0.345 6.345 23 O -0.152 6.152 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -1.101 7.759 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.078 4.078 4 C -0.230 4.230 5 C -0.245 4.245 6 C -0.016 4.016 7 C 0.099 3.901 8 H 0.089 0.911 9 C -0.179 4.179 10 C -0.157 4.157 11 C -0.183 4.183 12 C 0.163 3.837 13 H 0.034 0.966 14 C -0.564 4.564 15 H 0.083 0.917 16 C -0.128 4.128 17 N -0.494 5.494 18 Si 0.720 3.280 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 O -0.265 6.265 23 O -0.047 6.047 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.453 -1.480 7.532 12.177 hybrid contribution 0.509 -0.146 -0.342 0.630 sum -8.944 -1.626 7.190 11.590 Atomic orbital electron populations 1.21777 0.94381 1.01826 1.02535 1.20001 0.95979 0.88083 1.03794 1.22355 1.05402 0.95283 0.84716 1.21374 1.08204 0.94641 0.98786 1.21370 1.10103 0.99516 0.93557 1.22521 1.00273 0.84984 0.93832 1.20301 0.93173 0.88040 0.88558 0.91125 1.22178 0.98302 0.98222 0.99218 1.21614 0.99816 0.97107 0.97165 1.22277 0.99815 0.99637 0.96593 1.19776 0.88819 0.87480 0.87644 0.96612 1.20946 1.10582 1.32838 0.92061 0.91727 1.25084 0.96537 0.95606 0.95591 1.70021 1.22225 1.36987 1.20187 0.86665 0.78910 0.79765 0.82672 1.20043 1.21165 1.20043 1.88489 1.75824 1.34244 1.27917 1.84089 1.64158 1.22236 1.34224 0.92008 0.92423 0.92245 0.89369 0.90119 0.84157 0.83936 0.91499 0.92139 0.92697 0.92396 0.92368 0.92192 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.04 -0.53 6.47 -27.88 -0.18 -0.71 16 3 C -0.03 -0.46 6.57 -35.62 -0.23 -0.70 16 4 C -0.21 -3.43 10.81 -39.70 -0.43 -3.85 16 5 C -0.23 -4.04 10.81 -39.71 -0.43 -4.47 16 6 C 0.04 0.73 6.22 -35.63 -0.22 0.51 16 7 C 0.16 3.42 3.10 -27.84 -0.09 3.33 16 8 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 9 C -0.14 -2.56 5.40 -26.59 -0.14 -2.70 16 10 C -0.12 -2.10 6.03 -26.55 -0.16 -2.26 16 11 C -0.15 -3.08 5.36 -26.59 -0.14 -3.23 16 12 C 0.22 5.68 2.50 -27.84 -0.07 5.61 16 13 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 14 C -0.53 -14.99 8.79 -34.44 -0.30 -15.29 16 15 H 0.06 1.77 7.74 -52.49 -0.41 1.37 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 17 N -0.86 -25.82 12.84 55.43 0.71 -25.11 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 O -0.35 -9.24 9.40 -40.13 -0.38 -9.62 16 23 O -0.15 -3.26 10.63 0.78 0.01 -3.25 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 31 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -31.92 309.10 -8.03 -39.95 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.88 Total: -0.43 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.13 Total: -22.84 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.71 Total: -25.11 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.37 Total: -12.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.92 -8.03 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.126 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds