Wall clock time and date at job start Mon Mar 30 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.34515 * 125.79060 * 90.00255 * 3 2 1 5 5 C 1.41380 * 106.83832 * 179.97438 * 4 3 2 6 6 C 1.34506 * 106.84493 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.79301 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47866 * 25.02745 * 7 6 5 9 9 C 1.53086 * 109.48545 * 265.00412 * 7 6 5 10 10 C 1.53179 * 109.16712 * 182.40783 * 9 7 6 11 11 C 1.53176 * 109.03595 * 56.97829 * 10 9 7 12 12 C 1.53090 * 109.16145 * 303.02135 * 11 10 9 13 13 H 1.09003 * 109.48514 * 297.62375 * 12 11 10 14 14 C 1.50702 * 109.47843 * 177.59237 * 12 11 10 15 15 H 1.07998 * 120.00220 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99864 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00398 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99885 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47583 * 60.00094 * 18 16 14 20 20 H 1.48502 * 109.47304 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47104 * 299.99486 * 18 16 14 22 22 O 1.42900 * 109.41935 * 57.61028 * 12 11 10 23 23 O 1.34306 * 125.78568 * 269.69593 * 3 2 1 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.07995 * 126.57966 * 359.96450 * 4 3 2 30 30 H 1.08004 * 126.57406 * 180.02562 * 5 4 3 31 31 H 1.09009 * 109.51983 * 302.31321 * 9 7 6 32 32 H 1.08998 * 109.52564 * 62.43623 * 9 7 6 33 33 H 1.08996 * 109.54401 * 176.84639 * 10 9 7 34 34 H 1.09000 * 109.54134 * 297.11204 * 10 9 7 35 35 H 1.08995 * 109.52290 * 62.92612 * 11 10 9 36 36 H 1.09002 * 109.52357 * 183.05383 * 11 10 9 37 37 H 0.96995 * 120.00269 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7408 3.4230 0.6320 6 6 2.7251 3.3761 -0.7122 7 6 3.1217 4.4972 -1.6379 8 1 3.8174 5.1622 -1.1262 9 6 1.8748 5.2831 -2.0517 10 6 2.2780 6.3825 -3.0391 11 6 2.9861 5.7428 -4.2373 12 6 4.1901 4.9392 -3.7391 13 1 4.8999 5.6101 -3.2550 14 6 4.8576 4.2583 -4.9062 15 1 4.4633 4.3860 -5.9035 16 6 5.9723 3.4733 -4.7008 17 7 6.4534 3.3189 -3.4866 18 14 6.8000 2.6299 -6.1476 19 1 7.2565 3.6531 -7.1221 20 1 7.9678 1.8503 -5.6641 21 1 5.8334 1.7151 -6.8065 22 8 3.7493 3.9549 -2.8016 23 8 2.2995 2.1594 -1.0895 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.1851 1.8543 2.1204 30 1 3.0381 4.2623 1.2433 31 1 1.1613 4.6101 -2.5273 32 1 1.4188 5.7334 -1.1700 33 1 1.3876 6.9101 -3.3809 34 1 2.9531 7.0837 -2.5484 35 1 2.2951 5.0792 -4.7570 36 1 3.3246 6.5228 -4.9194 37 1 7.2373 2.7664 -3.3421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309464507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:28 Heat of formation + Delta-G solvation = -70.682762 kcal Electronic energy + Delta-G solvation = -18696.757954 eV Core-core repulsion = 15825.264249 eV Total energy + Delta-G solvation = -2871.493706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.50946 -39.87961 -35.27950 -34.89184 -34.18893 -33.88386 -32.28101 -29.36545 -27.41841 -25.50020 -23.96913 -23.41679 -22.49246 -21.12519 -20.81842 -18.77839 -17.84526 -17.00014 -16.67539 -16.55073 -16.07709 -15.62914 -15.26941 -15.13260 -14.65239 -14.31052 -13.94535 -13.78370 -13.63360 -13.31879 -13.09184 -12.86097 -12.75230 -12.54546 -12.41332 -12.17760 -11.90986 -11.88951 -11.84507 -11.51776 -10.91976 -10.78649 -10.61122 -9.88988 -9.14846 -8.17845 -6.38548 0.79630 1.38046 1.41890 1.49160 1.68793 2.08433 2.38454 2.95275 3.42956 3.76799 3.95052 4.03984 4.07040 4.17883 4.20365 4.37331 4.38815 4.39937 4.42914 4.59705 4.77875 4.87862 4.89354 4.93476 4.99526 5.02814 5.10058 5.13757 5.21274 5.21723 5.25883 5.34243 5.52621 5.70328 5.74801 6.16618 6.34035 6.63169 7.12396 7.37534 8.89913 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.007066 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.115198 B = 3961.539775 C = 4788.035447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.036 4.036 4 C -0.211 4.211 5 C -0.214 4.214 6 C -0.012 4.012 7 C 0.151 3.849 8 H 0.066 0.934 9 C -0.131 4.131 10 C -0.113 4.113 11 C -0.138 4.138 12 C 0.213 3.787 13 H -0.013 1.013 14 C -0.553 4.553 15 H 0.067 0.933 16 C 0.023 3.977 17 N -0.898 5.898 18 Si 0.962 3.038 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.272 1.272 22 O -0.383 6.383 23 O -0.191 6.191 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.178 0.822 30 H 0.166 0.834 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.857 -1.354 8.677 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.086 4.086 4 C -0.230 4.230 5 C -0.233 4.233 6 C -0.063 4.063 7 C 0.092 3.908 8 H 0.083 0.917 9 C -0.169 4.169 10 C -0.150 4.150 11 C -0.176 4.176 12 C 0.158 3.842 13 H 0.004 0.996 14 C -0.590 4.590 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.535 5.535 18 Si 0.786 3.214 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.198 1.198 22 O -0.303 6.303 23 O -0.088 6.088 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.196 0.804 30 H 0.184 0.816 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.734 -1.714 8.449 13.767 hybrid contribution 0.870 -0.100 -0.531 1.024 sum -9.863 -1.813 7.918 12.778 Atomic orbital electron populations 1.21749 0.92683 1.03438 1.02061 1.20271 0.97381 0.85589 1.04813 1.23342 1.04422 0.96699 0.84111 1.21804 1.07308 0.93587 1.00267 1.21775 1.08106 1.00857 0.92581 1.22571 1.03536 0.85319 0.94837 1.20512 0.94211 0.89065 0.87000 0.91656 1.22105 0.96450 0.97781 1.00530 1.21606 1.01024 0.96942 0.95435 1.22132 0.97978 0.99245 0.98267 1.19679 0.90269 0.87226 0.87054 0.99584 1.21431 1.11332 1.33041 0.93167 0.91524 1.25987 0.97261 0.96307 0.98412 1.70171 1.22802 1.38037 1.22459 0.85574 0.77731 0.78812 0.79279 1.18388 1.20733 1.19761 1.88356 1.76736 1.35405 1.29801 1.84043 1.65182 1.23014 1.36552 0.89352 0.91474 0.94122 0.86354 0.91025 0.80438 0.81634 0.92574 0.88850 0.89110 0.91464 0.93236 0.91201 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.89 71.98 0.71 -2.05 16 2 C -0.04 -1.04 6.47 29.85 0.19 -0.85 16 3 C -0.04 -1.21 6.57 24.83 0.16 -1.04 16 4 C -0.21 -6.41 10.81 22.19 0.24 -6.17 16 5 C -0.21 -7.41 10.81 22.19 0.24 -7.17 16 6 C -0.01 -0.53 6.22 24.83 0.15 -0.37 16 7 C 0.15 6.66 3.10 29.88 0.09 6.75 16 8 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 9 C -0.13 -4.65 5.40 30.68 0.17 -4.48 16 10 C -0.11 -3.80 6.03 30.71 0.19 -3.61 16 11 C -0.14 -5.90 5.36 30.68 0.16 -5.74 16 12 C 0.21 11.54 2.50 29.88 0.07 11.61 16 13 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 14 C -0.55 -32.44 8.79 25.60 0.23 -32.21 16 15 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 16 C 0.02 1.35 5.40 84.65 0.46 1.80 16 17 N -0.90 -56.03 12.84 21.45 0.28 -55.76 16 18 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 O -0.38 -21.41 9.40 -144.30 -1.36 -22.77 16 23 O -0.19 -8.41 10.63 2.10 0.02 -8.39 16 24 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 30 H 0.17 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -72.65 309.10 5.06 -67.59 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.03 Total: 15.48 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.07 Total: -43.52 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.76 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.33 Total: -31.16 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.65 5.06 -67.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.093 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds