Wall clock time and date at job start Mon Mar 30 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46957 * 2 1 4 4 C 1.34521 * 125.79233 * 89.99768 * 3 2 1 5 5 C 1.41377 * 106.84305 * 180.02562 * 4 3 2 6 6 C 1.34512 * 106.84131 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.78835 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.48361 * 339.97929 * 7 6 5 9 9 C 1.53090 * 109.48343 * 100.00494 * 7 6 5 10 10 C 1.53171 * 109.16805 * 177.60023 * 9 7 6 11 11 C 1.53173 * 109.03669 * 303.01726 * 10 9 7 12 12 C 1.53098 * 109.16229 * 56.98045 * 11 10 9 13 13 H 1.09002 * 109.48138 * 62.37251 * 12 11 10 14 14 C 1.50695 * 109.48068 * 182.39622 * 12 11 10 15 15 H 1.08008 * 120.00347 * 359.97438 * 14 12 11 16 16 C 1.37880 * 120.00204 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99843 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00157 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46857 * 60.00316 * 18 16 14 20 20 H 1.48499 * 109.46858 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47223 * 300.00301 * 18 16 14 22 22 O 1.42901 * 109.41540 * 302.38969 * 12 11 10 23 23 O 1.34301 * 108.41962 * 0.26546 * 6 5 4 24 24 H 1.08997 * 109.47463 * 300.00361 * 1 2 3 25 25 H 1.08999 * 109.46969 * 60.00581 * 1 2 3 26 26 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.48033 * 240.00096 * 2 1 3 28 28 H 1.08999 * 109.46969 * 119.99419 * 2 1 3 29 29 H 1.08004 * 126.57557 * 0.05857 * 4 3 2 30 30 H 1.07996 * 126.57982 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.52545 * 57.69290 * 9 7 6 32 32 H 1.09002 * 109.51695 * 297.50761 * 9 7 6 33 33 H 1.08994 * 109.54754 * 183.14629 * 10 9 7 34 34 H 1.09005 * 109.61371 * 62.92604 * 10 9 7 35 35 H 1.08999 * 109.52785 * 297.07556 * 11 10 9 36 36 H 1.09009 * 109.57492 * 176.91040 * 11 10 9 37 37 H 0.97003 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1626 1.0912 5 6 2.7396 3.4235 0.6321 6 6 2.7234 3.3768 -0.7121 7 6 3.1199 4.4979 -1.6378 8 1 3.0813 5.4448 -1.0993 9 6 4.5430 4.2589 -2.1490 10 6 4.9164 5.3700 -3.1350 11 6 3.8881 5.3971 -4.2699 12 6 2.4901 5.5922 -3.6769 13 1 2.4433 6.5534 -3.1650 14 6 1.4665 5.5611 -4.7823 15 1 1.7807 5.4171 -5.8056 16 6 0.1285 5.7165 -4.4876 17 7 -0.2542 5.8923 -3.2417 18 14 -1.1404 5.6787 -5.8580 19 1 -1.0765 4.3694 -6.5556 20 1 -2.4962 5.8678 -5.2824 21 1 -0.8571 6.7693 -6.8251 22 8 2.2184 4.5428 -2.7458 23 8 2.2889 2.1633 -1.0893 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.1862 1.8539 2.1205 30 1 3.0358 4.2631 1.2433 31 1 4.5919 3.2935 -2.6526 32 1 5.2379 4.2684 -1.3093 33 1 5.9072 5.1755 -3.5454 34 1 4.9170 6.3309 -2.6205 35 1 3.9236 4.4546 -4.8164 36 1 4.1141 6.2201 -4.9480 37 1 -1.1954 6.0020 -3.0343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309464510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:30 Heat of formation + Delta-G solvation = -70.725493 kcal Electronic energy + Delta-G solvation = -18723.506972 eV Core-core repulsion = 15852.011413 eV Total energy + Delta-G solvation = -2871.495559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.51112 -39.87800 -35.28261 -34.88707 -34.19081 -33.88118 -32.28768 -29.37371 -27.42996 -25.50569 -23.96573 -23.40911 -22.53103 -21.13253 -20.79873 -18.78401 -17.78702 -17.09192 -16.69473 -16.48002 -16.10935 -15.59001 -15.30048 -15.10942 -14.63036 -14.36851 -13.97087 -13.79178 -13.64842 -13.22992 -13.15136 -12.86392 -12.75318 -12.54928 -12.42826 -12.18066 -11.91928 -11.88531 -11.84403 -11.51587 -10.92176 -10.78942 -10.61218 -9.88527 -9.15844 -8.17940 -6.38571 0.78683 1.37745 1.41544 1.48808 1.68384 2.08196 2.38193 2.95988 3.43400 3.77473 3.94631 4.04072 4.07494 4.17959 4.19904 4.35748 4.38643 4.40087 4.42757 4.58821 4.77894 4.86937 4.88539 4.92588 4.97084 5.02463 5.10219 5.13324 5.21574 5.21770 5.25889 5.33259 5.52574 5.70041 5.74663 6.16570 6.33634 6.62915 7.12191 7.37360 8.89632 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.007695 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.556458 B = 3637.640303 C = 4746.194005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.035 4.035 4 C -0.211 4.211 5 C -0.215 4.215 6 C -0.012 4.012 7 C 0.151 3.849 8 H 0.066 0.934 9 C -0.132 4.132 10 C -0.113 4.113 11 C -0.138 4.138 12 C 0.213 3.787 13 H -0.014 1.014 14 C -0.553 4.553 15 H 0.067 0.933 16 C 0.023 3.977 17 N -0.897 5.897 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.260 1.260 22 O -0.383 6.383 23 O -0.191 6.191 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.178 0.822 30 H 0.164 0.836 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -8.241 8.046 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C -0.085 4.085 4 C -0.230 4.230 5 C -0.234 4.234 6 C -0.062 4.062 7 C 0.092 3.908 8 H 0.084 0.916 9 C -0.169 4.169 10 C -0.150 4.150 11 C -0.176 4.176 12 C 0.158 3.842 13 H 0.004 0.996 14 C -0.590 4.590 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.534 5.534 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.184 1.184 22 O -0.303 6.303 23 O -0.088 6.088 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.196 0.804 30 H 0.182 0.818 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.533 -8.427 7.834 13.231 hybrid contribution -0.757 0.552 -0.476 1.051 sum 5.776 -7.875 7.358 12.227 Atomic orbital electron populations 1.21786 0.93931 1.03346 1.01497 1.20257 0.96357 0.85565 1.05378 1.23368 1.04267 0.96830 0.84058 1.21813 1.07343 0.93528 1.00322 1.21789 1.08128 1.00749 0.92696 1.22547 1.03587 0.85290 0.94817 1.20502 0.91008 0.91499 0.87742 0.91624 1.22104 0.95055 0.99586 1.00181 1.21601 0.99148 0.98335 0.95922 1.22135 0.95827 1.01262 0.98405 1.19676 0.92260 0.85306 0.86953 0.99595 1.21432 0.92540 1.51902 0.93110 0.91531 1.25988 1.00960 0.93191 0.97854 1.70174 1.16416 1.47014 1.19751 0.85578 0.77564 0.79112 0.79181 1.19735 1.20753 1.18397 1.88357 1.52971 1.54777 1.34236 1.84022 1.65109 1.23070 1.36576 0.92063 0.95202 0.88927 0.90153 0.85648 0.80444 0.81794 0.92511 0.88900 0.89131 0.91482 0.93226 0.91207 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.89 71.98 0.71 -2.69 16 2 C -0.04 -0.90 6.47 29.85 0.19 -0.71 16 3 C -0.04 -1.18 6.58 24.83 0.16 -1.02 16 4 C -0.21 -6.43 10.81 22.19 0.24 -6.19 16 5 C -0.21 -7.50 10.80 22.19 0.24 -7.26 16 6 C -0.01 -0.52 6.21 24.83 0.15 -0.36 16 7 C 0.15 6.68 3.11 29.88 0.09 6.77 16 8 H 0.07 2.87 8.13 -2.39 -0.02 2.85 16 9 C -0.13 -4.68 5.40 30.68 0.17 -4.51 16 10 C -0.11 -3.80 6.03 30.71 0.19 -3.62 16 11 C -0.14 -5.91 5.36 30.68 0.16 -5.75 16 12 C 0.21 11.56 2.50 29.88 0.07 11.63 16 13 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 14 C -0.55 -32.45 8.79 25.60 0.23 -32.23 16 15 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 16 C 0.02 1.34 5.40 84.66 0.46 1.79 16 17 N -0.90 -55.91 12.84 21.45 0.28 -55.63 16 18 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 O -0.38 -21.44 9.42 -146.82 -1.38 -22.82 16 23 O -0.19 -8.32 10.65 -0.29 0.00 -8.32 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 29 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 30 H 0.16 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.73 309.12 5.01 -67.72 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.03 Total: 15.82 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 3.07 Total: -44.14 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.39 Total: -31.15 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.73 5.01 -67.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.006 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds